Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTACCATCAGTTCGGACGAGGTGCGAGTGGAGATTTAGTGGTTTCTATGGGAATCCTATAGCTGACAAAAGGGTTGACTCGTGGGTGCTTTTAAAAATACTTTGTGAGATGGACCAGAATAAGCTCCCGTGGATTTTATGGGGAGACTTTAATGAGATCATGTTCAACCATGAGAAAAAGGGAGGGGCCGAGAGAAATCCAAAGCTTATGGATAACTTTGTGGAGGCTTTGGATCATTGTAATCTTAAGGACGTTGGATTTTTTGGTAATAAATTTACGTGGGCCAGGGGCAAGAAAAACGAGGCAAGAATTAGAGAAAGATTAGATAGATTTTTTGTGAACCAACCTATGGCCGACTTGTTCAAAAGCATAAAGGTAACACATCTTAAGTTCCATGGATCAGACAATAGACCAATTATGGCCATGATGACCATGGAAGAGCTTGCGGTGAGAAATTCTAAAGTGAGAAATCTGTTGAGATTTGGGGAGTCGTGGACGAGTTTGGAAGAGACCAAAGACTGTTGGGTTTTATGTCCTAAAACTCGTAGATAG mRNA sequence
ATGCTACCATCAGTTCGGACGAGGTGCGAGTGGAGATTTAGTGGTTTCTATGGGAATCCTATAGCTGACAAAAGGGTTGACTCGTGGGTGCTTTTAAAAATACTTTGTGAGATGGACCAGAATAAGCTCCCGTGGATTTTATGGGGAGACTTTAATGAGATCATGTTCAACCATGAGAAAAAGGGAGGGGCCGAGAGAAATCCAAAGCTTATGGATAACTTTGTGGAGGCTTTGGATCATTGTAATCTTAAGGACGTTGGATTTTTTGGTAATAAATTTACGTGGGCCAGGGGCAAGAAAAACGAGGCAAGAATTAGAGAAAGATTAGATAGATTTTTTGTGAACCAACCTATGGCCGACTTGTTCAAAAGCATAAAGGTAACACATCTTAAGTTCCATGGATCAGACAATAGACCAATTATGGCCATGATGACCATGGAAGAGCTTGCGGTGAGAAATTCTAAAGTGAGAAATCTGTTGAGATTTGGGGAGTCGTGGACGAGTTTGGAAGAGACCAAAGACTGTTGGGTTTTATGTCCTAAAACTCGTAGATAG Coding sequence (CDS)
ATGCTACCATCAGTTCGGACGAGGTGCGAGTGGAGATTTAGTGGTTTCTATGGGAATCCTATAGCTGACAAAAGGGTTGACTCGTGGGTGCTTTTAAAAATACTTTGTGAGATGGACCAGAATAAGCTCCCGTGGATTTTATGGGGAGACTTTAATGAGATCATGTTCAACCATGAGAAAAAGGGAGGGGCCGAGAGAAATCCAAAGCTTATGGATAACTTTGTGGAGGCTTTGGATCATTGTAATCTTAAGGACGTTGGATTTTTTGGTAATAAATTTACGTGGGCCAGGGGCAAGAAAAACGAGGCAAGAATTAGAGAAAGATTAGATAGATTTTTTGTGAACCAACCTATGGCCGACTTGTTCAAAAGCATAAAGGTAACACATCTTAAGTTCCATGGATCAGACAATAGACCAATTATGGCCATGATGACCATGGAAGAGCTTGCGGTGAGAAATTCTAAAGTGAGAAATCTGTTGAGATTTGGGGAGTCGTGGACGAGTTTGGAAGAGACCAAAGACTGTTGGGTTTTATGTCCTAAAACTCGTAGATAG Protein sequence
MLPSVRTRCEWRFSGFYGNPIADKRVDSWVLLKILCEMDQNKLPWILWGDFNEIMFNHEKKGGAERNPKLMDNFVEALDHCNLKDVGFFGNKFTWARGKKNEARIRERLDRFFVNQPMADLFKSIKVTHLKFHGSDNRPIMAMMTMEELAVRNSKVRNLLRFGESWTSLEETKDCWVLCPKTRR
Homology
BLAST of Lag0032298 vs. NCBI nr
Match:
XP_022155286.1 (uncharacterized protein LOC111022423 [Momordica charantia])
HSP 1 Score: 144.8 bits (364), Expect = 7.3e-31
Identity = 74/168 (44.05%), Postives = 99/168 (58.93%), Query Frame = 0
Query: 8 RCEWRFSGFYGNPIADKRVDSWVLLKILCEMDQNKLPWILWGDFNEIMFNHEKKGGAERN 67 R WRF+G YG+ + D R ++W L+ L + LPWIL GDFNEI+FN EK G R Sbjct: 6 RYNWRFTGIYGHLVQDNRWETWELIGRLHSIFD--LPWILGGDFNEILFNSEKLEGVPRR 65 Query: 68 PKLMDNFVEALDHCNLKDVGFFGNKFTWARGKKNEARIRERLDRFFVNQPMADLFKSIKV 127 LM NF + LD C L D GF G+ FTW G K I ERLDRF +N + + +++++ Sbjct: 66 QSLMQNFKDTLDLCGLLDPGFVGDIFTWCDGHKYRQPIWERLDRFLINTAIFQIQETLEI 125 Query: 128 THLKFHGSDNRPIMA-MMTMEELAVRNSKVRNLLRFGESWTSLEETKD 175 HL+F SD+RPI+A + + E V K R RF E W S +E K+ Sbjct: 126 RHLEFLASDHRPILAEWLGVGEATVGRRKGRRPHRFEEQWFSFQECKE 171
BLAST of Lag0032298 vs. NCBI nr
Match:
KAF4351405.1 (hypothetical protein F8388_001025, partial [Cannabis sativa])
HSP 1 Score: 142.5 bits (358), Expect = 3.6e-30
Identity = 72/165 (43.64%), Postives = 100/165 (60.61%), Query Frame = 0
Query: 11 WRFSGFYGNPIADKRVDSWVLLKILCEM-DQNKLPWILWGDFNEIMFNHEKKGGAERNPK 70 WRF+GFYGNP A R+DSW ++LC + LPWI GDFNEI+ +EKKGG +R+ Sbjct: 661 WRFTGFYGNPKASSRIDSW---QLLCRLKGLFDLPWICGGDFNEILSINEKKGGVDRSLS 720 Query: 71 LMDNFVEALDHCNLKDVGFFGNKFTWARGKKNEARIRERLDRFFVNQPMADLFKSIKVTH 130 + +F +ALD C+L D+GF G FTW ++ A ++ERLDR+F NQ +LF S+KV + Sbjct: 721 AISDFQQALDKCDLVDMGFEGQCFTWLNKRQGVAHVQERLDRYFCNQEWHNLFPSVKVVN 780 Query: 131 LKFHGSDNRPIMAMMTMEELAVRNSKVRNLLRFGESWTSLEETKD 175 F SD+RPI A++ + R + RF W E +D Sbjct: 781 GDFIHSDHRPIAAILE-NVVCNRQYDKKKSFRFETHWLKDAECRD 821
BLAST of Lag0032298 vs. NCBI nr
Match:
KAF4381998.1 (hypothetical protein G4B88_006630 [Cannabis sativa])
HSP 1 Score: 141.7 bits (356), Expect = 6.1e-30
Identity = 74/165 (44.85%), Postives = 98/165 (59.39%), Query Frame = 0
Query: 11 WRFSGFYGNPIADKRVDSWVLLKILCEM-DQNKLPWILWGDFNEIMFNHEKKGGAERNPK 70 WRF+GFYGNP A R +SW ++LC + D LPWI GDFNEI+ +EKKGG++R+ Sbjct: 542 WRFTGFYGNPKASCRSESW---RLLCRLKDLFDLPWICGGDFNEILSINEKKGGSDRSMS 601 Query: 71 LMDNFVEALDHCNLKDVGFFGNKFTWARGKKNEARIRERLDRFFVNQPMADLFKSIKVTH 130 M F ALD C+L D+GF G FTW ++ A ++ERLDR+F NQ DLF +KV + Sbjct: 602 AMTEFQNALDRCSLADLGFEGQCFTWLNKRQGGAHVQERLDRYFCNQRWHDLFPFVKVLN 661 Query: 131 LKFHGSDNRPIMAMMTMEELAVRNSKVRNLLRFGESWTSLEETKD 175 F SD+RPI+A + R K R RF W E ++ Sbjct: 662 GDFLNSDHRPIVATLENVSRRQRYDKKR-CFRFETHWLKDPECQE 702
BLAST of Lag0032298 vs. NCBI nr
Match:
KAF4383622.1 (hypothetical protein F8388_014122 [Cannabis sativa])
HSP 1 Score: 141.7 bits (356), Expect = 6.1e-30
Identity = 74/165 (44.85%), Postives = 98/165 (59.39%), Query Frame = 0
Query: 11 WRFSGFYGNPIADKRVDSWVLLKILCEM-DQNKLPWILWGDFNEIMFNHEKKGGAERNPK 70 WRF+GFYGNP A R +SW ++LC + D LPWI GDFNEI+ +EKKGG++R+ Sbjct: 566 WRFTGFYGNPKASCRSESW---RLLCRLKDLFDLPWICGGDFNEILSINEKKGGSDRSMS 625 Query: 71 LMDNFVEALDHCNLKDVGFFGNKFTWARGKKNEARIRERLDRFFVNQPMADLFKSIKVTH 130 M F ALD C+L D+GF G FTW ++ A ++ERLDR+F NQ DLF +KV + Sbjct: 626 AMTEFQNALDRCSLADLGFEGQCFTWLNKRQGGAHVQERLDRYFCNQRWHDLFPFVKVLN 685 Query: 131 LKFHGSDNRPIMAMMTMEELAVRNSKVRNLLRFGESWTSLEETKD 175 F SD+RPI+A + R K R RF W E ++ Sbjct: 686 GDFLNSDHRPIVATLENVSRRQRYDKKR-CFRFETHWLKDPECQE 726
BLAST of Lag0032298 vs. NCBI nr
Match:
KAF4347816.1 (hypothetical protein G4B88_012929 [Cannabis sativa])
HSP 1 Score: 141.4 bits (355), Expect = 8.0e-30
Identity = 73/161 (45.34%), Postives = 97/161 (60.25%), Query Frame = 0
Query: 11 WRFSGFYGNPIADKRVDSWVLLKILCEM-DQNKLPWILWGDFNEIMFNHEKKGGAERNPK 70 WRF+GFYGNP A R +SW ++LC + D LPWI GDFNEI+ +EKKGG++R+ Sbjct: 566 WRFTGFYGNPKASCRSESW---RLLCRLKDLFDLPWICGGDFNEILSINEKKGGSDRSMS 625 Query: 71 LMDNFVEALDHCNLKDVGFFGNKFTWARGKKNEARIRERLDRFFVNQPMADLFKSIKVTH 130 M F ALD C+L D+GF G FTW ++ A ++ERLDR+F NQ DLF +KV + Sbjct: 626 AMTEFQNALDRCSLADLGFEGQCFTWLNKRQGGAHVQERLDRYFCNQRWHDLFPFVKVLN 685 Query: 131 LKFHGSDNRPIMAMMTMEELAVRNSKVRNLLRFGESWTSLE 171 F SD+RPI+A + N+ R SW SL+ Sbjct: 686 GDFLNSDHRPIVATL------------ENVSRRQRSWLSLD 711
The following BLAST results are available for this feature:
Match Name E-value Identity Description
XP_022155286.1 7.3e-31 44.05 uncharacterized protein LOC111022423 [Momordica charantia] [more]
KAF4351405.1 3.6e-30 43.64 hypothetical protein F8388_001025, partial [Cannabis sativa] [more]
KAF4381998.1 6.1e-30 44.85 hypothetical protein G4B88_006630 [Cannabis sativa] [more]
KAF4383622.1 6.1e-30 44.85 hypothetical protein F8388_014122 [Cannabis sativa] [more]
KAF4347816.1 8.0e-30 45.34 hypothetical protein G4B88_012929 [Cannabis sativa] [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
A T G C T A C C A T C A G T T C G G A C G A G G T G C G A G T G G A G A T T T A G T G G T T T C T A T G G G A A T C C T A T A G C T G A C A A A A G G G T T G A C T C G T G G G T G C T T T T A A A A A T A C T T T G T G A G A T G G A C C A G A A T A A G C T C C C G T G G A T T T T A T G G G G A G A C T T T A A T G A G A T C A T G T T C A A C C A T G A G A A A A A G G G A G G G G C C G A G A G A A A T C C A A A G C T T A T G G A T A A C T T T G T G G A G G C T T T G G A T C A T T G T A A T C T T A A G G A C G T T G G A T T T T T T G G T A A T A A A T T T A C G T G G G C C A G G G G C A A G A A A A A C G A G G C A A G A A T T A G A G A A A G A T T A G A T A G A T T T T T T G T G A A C C A A C C T A T G G C C G A C T T G T T C A A A A G C A T A A A G G T A A C A C A T C T T A A G T T C C A T G G A T C A G A C A A T A G A C C A A T T A T G G C C A T G A T G A C C A T G G A A G A G C T T G C G G T G A G A A A T T C T A A A G T G A G A A A T C T G T T G A G A T T T G G G G A G T C G T G G A C G A G T T T G G A A G A G A C C A A A G A C T G T T G G G T T T T A T G T C C T A A A A C T C G T A G A T A G 50 100 150 200 250 300 350 400 450 500 550 Expect = 1.4E-15 / Score = 59.7 Score = Score = Score = Sequence G3DSA:3.60.10.10 SSF56219 PTHR33710 PTHR33710:SF35
IPR Term IPR Description Source Source Term Source Description Alignment
IPR036691 Endonuclease/exonuclease/phosphatase superfamily GENE3D 3.60.10.10 Endonuclease/exonuclease/phosphatase coord: 4..144 e-value: 1.4E-15 score: 59.7
IPR036691 Endonuclease/exonuclease/phosphatase superfamily SUPERFAMILY 56219 DNase I-like coord: 11..144
None No IPR available PANTHER PTHR33710 BNAC02G09200D PROTEIN coord: 24..144
None No IPR available PANTHER PTHR33710:SF35 SUBFAMILY NOT NAMED coord: 24..144
Relationships
The following mRNA feature(s) are a part of this gene: