Lag0031370 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0031370
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionPMEI domain-containing protein
Locationchr11: 7697388 .. 7697741 (+)
RNA-Seq ExpressionLag0031370
SyntenyLag0031370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTGAGTTCCTTCAGGTGCTCCGGCGGGCATGGGTACGTGAAAAGAGGGTACTATCCGGCGGTGGCGGTGGCGGTGGTTCTTGGGTGCAGGTCGGCGGAGAAGACGACGGCGAGATGGAGAGTTCTGTGGCGGAGGCTGAAGAAGGAGAAGAGGAGAATGTTCAGCTGCGGCGGTTCTTCGAGTGGGGCACGCGAGGTGCACGTGGCGTATGATCCAGAGAGTTATTTGCAGAACTTCGATCAAGGATCTGTGATGATGGTGAGCGACGATCCTGACGCCATTTCTCGATCTTTCTCTGCTCGTTTCGCCATTTTAAGAAGGCGCGAATTTCTGGTACAGAAAGTTTAG

mRNA sequence

ATGGATTTGAGTTCCTTCAGGTGCTCCGGCGGGCATGGGTACGTGAAAAGAGGGTACTATCCGGCGGTGGCGGTGGCGGTGGTTCTTGGGTGCAGGTCGGCGGAGAAGACGACGGCGAGATGGAGAGTTCTGTGGCGGAGGCTGAAGAAGGAGAAGAGGAGAATGTTCAGCTGCGGCGGTTCTTCGAGTGGGGCACGCGAGGTGCACGTGGCGTATGATCCAGAGAGTTATTTGCAGAACTTCGATCAAGGATCTGTGATGATGGTGAGCGACGATCCTGACGCCATTTCTCGATCTTTCTCTGCTCGTTTCGCCATTTTAAGAAGGCGCGAATTTCTGGTACAGAAAGTTTAG

Coding sequence (CDS)

ATGGATTTGAGTTCCTTCAGGTGCTCCGGCGGGCATGGGTACGTGAAAAGAGGGTACTATCCGGCGGTGGCGGTGGCGGTGGTTCTTGGGTGCAGGTCGGCGGAGAAGACGACGGCGAGATGGAGAGTTCTGTGGCGGAGGCTGAAGAAGGAGAAGAGGAGAATGTTCAGCTGCGGCGGTTCTTCGAGTGGGGCACGCGAGGTGCACGTGGCGTATGATCCAGAGAGTTATTTGCAGAACTTCGATCAAGGATCTGTGATGATGGTGAGCGACGATCCTGACGCCATTTCTCGATCTTTCTCTGCTCGTTTCGCCATTTTAAGAAGGCGCGAATTTCTGGTACAGAAAGTTTAG

Protein sequence

MDLSSFRCSGGHGYVKRGYYPAVAVAVVLGCRSAEKTTARWRVLWRRLKKEKRRMFSCGGSSSGAREVHVAYDPESYLQNFDQGSVMMVSDDPDAISRSFSARFAILRRREFLVQKV
Homology
BLAST of Lag0031370 vs. NCBI nr
Match: KAG7036482.1 (hypothetical protein SDJN02_00099, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143.3 bits (360), Expect = 1.3e-30
Identity = 85/125 (68.00%), Postives = 95/125 (76.00%), Query Frame = 0

Query: 1   MDLSSFR-CSGGHGYVKRGYYPAVAVAVVLGCRSAEKTTARWRVLWRRLKKEKRRMFSCG 60
           M+LS  R   GG GYV+RGYY AV VAV+      EKTTARWRV+WRRLKKEK+RMF CG
Sbjct: 1   MNLSCLRGAGGGIGYVERGYYSAVTVAVL------EKTTARWRVVWRRLKKEKKRMFRCG 60

Query: 61  GSSSGAREVHVAYDPESYLQNFDQGSVMMV-SDDPDAISRSFSARF----AILRR--REF 118
              SGAREVHV Y+P++YLQNFD GSVMMV  DDPDAISRSFSARF    AILRR   EF
Sbjct: 61  --MSGAREVHVPYNPKTYLQNFDDGSVMMVGDDDPDAISRSFSARFAISSAILRRPPPEF 117

BLAST of Lag0031370 vs. NCBI nr
Match: KAG6606769.1 (hypothetical protein SDJN03_00111, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.1 bits (357), Expect = 3.0e-30
Identity = 84/125 (67.20%), Postives = 95/125 (76.00%), Query Frame = 0

Query: 1   MDLSSFR-CSGGHGYVKRGYYPAVAVAVVLGCRSAEKTTARWRVLWRRLKKEKRRMFSCG 60
           M+LS  R   GG GYV+RGYY AV VAV+      EKTT+RWRV+WRRLKKEK+RMF CG
Sbjct: 1   MNLSCLRGAGGGIGYVERGYYSAVTVAVL------EKTTSRWRVVWRRLKKEKKRMFRCG 60

Query: 61  GSSSGAREVHVAYDPESYLQNFDQGSVMMV-SDDPDAISRSFSARF----AILRR--REF 118
              SGAREVHV Y+P++YLQNFD GSVMMV  DDPDAISRSFSARF    AILRR   EF
Sbjct: 61  --MSGAREVHVPYNPKTYLQNFDDGSVMMVGDDDPDAISRSFSARFAISSAILRRPPPEF 117

BLAST of Lag0031370 vs. NCBI nr
Match: OMO66774.1 (hypothetical protein COLO4_30383 [Corchorus olitorius])

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-15
Identity = 58/117 (49.57%), Postives = 73/117 (62.39%), Query Frame = 0

Query: 1   MDLSSFRCSGG--------HGYVKRGYYPAVAVAVVLGCRSAEKTTARWRVLWRRLKKEK 60
           M+LS   CS G         GYVKR Y   V++  VL  RS  K   RWR+LWR+L +EK
Sbjct: 1   MELSKC-CSSGTQELRWSQQGYVKRRYDRMVSINNVLVNRS--KLQPRWRMLWRKLMREK 60

Query: 61  RRMFSCGGSSSGAREVHVAYDPESYLQNFDQGSVMMVSDDPDAISRSFSARFAILRR 110
           R++F C  S+     VHV+YDP +Y QNFDQG   ++S DPD +SRSFSARFA+  R
Sbjct: 61  RKIFDCSSST----RVHVSYDPYTYAQNFDQG---LMSADPDDLSRSFSARFAVPSR 107

BLAST of Lag0031370 vs. NCBI nr
Match: OMO54117.1 (hypothetical protein CCACVL1_28042 [Corchorus capsularis])

HSP 1 Score: 91.7 bits (226), Expect = 4.6e-15
Identity = 57/117 (48.72%), Postives = 72/117 (61.54%), Query Frame = 0

Query: 1   MDLSSFRCSGG--------HGYVKRGYYPAVAVAVVLGCRSAEKTTARWRVLWRRLKKEK 60
           M+LS   CS G         GYVK  Y   V++  VL  RS  K   RWR+LWR+L +EK
Sbjct: 1   MELSKC-CSSGTQELRWSQQGYVKSRYDRMVSINNVLVNRS--KLQPRWRMLWRKLMREK 60

Query: 61  RRMFSCGGSSSGAREVHVAYDPESYLQNFDQGSVMMVSDDPDAISRSFSARFAILRR 110
           R++F C  S+     VHV+YDP +Y QNFDQG   ++S DPD +SRSFSARFA+  R
Sbjct: 61  RKIFDCSSST----RVHVSYDPYTYAQNFDQG---LMSADPDDLSRSFSARFAVSSR 107

BLAST of Lag0031370 vs. NCBI nr
Match: KDO51221.1 (hypothetical protein CISIN_1g044132mg [Citrus sinensis])

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-14
Identity = 55/116 (47.41%), Postives = 71/116 (61.21%), Query Frame = 0

Query: 1   MDLSSFRCSGG------HGYVKRGYYPAVAV-AVVLGCRSAEKTTARWRVLWRRLKKEKR 60
           MDL+ +  SG         YVKRGY   ++   ++ G +     T RWR+LWR++K+EK+
Sbjct: 42  MDLNGWCNSGNQNMCCCQSYVKRGYDRVLSFNGLITGSK-----TPRWRLLWRKIKREKK 101

Query: 61  RMFSCGGSSSGAREVHVAYDPESYLQNFDQGSVMMVSDDPDAISRSFSARFAILRR 110
           R+F C   SSG+  VHV YDP +Y QNFDQG V     DPD  SRSFSARFA+  R
Sbjct: 102 RIFDC---SSGSTNVHVPYDPCTYSQNFDQGYVWA---DPDNASRSFSARFAVPSR 146

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7036482.11.3e-3068.00hypothetical protein SDJN02_00099, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6606769.13.0e-3067.20hypothetical protein SDJN03_00111, partial [Cucurbita argyrosperma subsp. sorori... [more]
OMO66774.11.2e-1549.57hypothetical protein COLO4_30383 [Corchorus olitorius][more]
OMO54117.14.6e-1548.72hypothetical protein CCACVL1_28042 [Corchorus capsularis][more]
KDO51221.11.3e-1447.41hypothetical protein CISIN_1g044132mg [Citrus sinensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33168:SF70OS01G0182300 PROTEINcoord: 35..105
NoneNo IPR availablePANTHERPTHR33168STRESS INDUCED PROTEIN-RELATEDcoord: 35..105
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..31
score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0031370.1Lag0031370.1mRNA