Lag0031140 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0031140
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Myb_DNA-bind_3 domain-containing protein
Location	chr11: 5231876 .. 5232216 (+)
RNA-Seq Expression	Lag0031140
Synteny	Lag0031140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GACTCATGAAGACGAGTTGTATTGAGGACGTTATTCAAATTGATGGAATGAAATACGATGGACCATGGTCTTTAAAAAACGAGACAATTTTTATTGATTTGATGGATGAAGAAGTTGCAAAAGGAAATCGTCCTACTACAACCTTTACTAGAACTAGTTGGACTTTTATGAAGGAGCAATTATTTGCTAAAACAGGATACAATTATACTCATGATCAATTGAAGAATAAGTATAACAATCTTAGACAAGTTTATAAAGATTTCAAAAGATTGTTGAGTGATATTACTGGAAAATGTTGGGATCCAGTGTTGGGGACTATTACTTTGGAAGAGGAGCAGTGA

mRNA sequence

CTCATGAAGACGAGTTGTATTGAGGACGTTATTCAAATTGATGGAATGAAATACGATGGACCATGGTCTTTAAAAAACGAGACAATTTTTATTGATTTGATGGATGAAGAAGTTGCAAAAGGAAATCGTCCTACTACAACCTTTACTAGAACTAGTTGGACTTTTATGAAGGAGCAATTATTTGCTAAAACAGGATACAATTATACTCATGATCAATTGAAGAATAAGTATAACAATCTTAGACAAGTTTATAAAGATTTCAAAAGATTGTTGAGTGATATTACTGGAAAATGTTGGGATCCAGTGTTGGGGACTATTACTTTGGAAGAGGAGCAGTGA

Coding sequence (CDS)

GACTCATGAAGACGAGTTGTATTGAGGACGTTATTCAAATTGATGGAATGAAATACGATGGACCATGGTCTTTAAAAAACGAGACAATTTTTATTGATTTGATGGATGAAGAAGTTGCAAAAGGAAATCGTCCTACTACAACCTTTACTAGAACTAGTTGGACTTTTATGAAGGAGCAATTATTTGCTAAAACAGGATACAATTATACTCATGATCAATTGAAGAATAAGTATAACAATCTTAGACAAGTTTATAAAGATTTCAAAAGATTGTTGAGTGATATTACTGGAAAATGTTGGGATCCAGTGTTGGGGACTATTACTTTGGAAGAGGAGCAGTGA

Protein sequence

LMKTSCIEDVIQIDGMKYDGPWSLKNETIFIDLMDEEVAKGNRPTTTFTRTSWTFMKEQLFAKTGYNYTHDQLKNKYNNLRQVYKDFKRLLSDITGKCWDPVLGTITLEEEQ

Homology

[Close]

BLAST of Lag0031140 vs. NCBI nr
Match: XP_038904553.1 (L10-interacting MYB domain-containing protein-like isoform X2 [Benincasa hispida])

HSP 1 Score: 195.3 bits (495), Expect = 2.9e-46
Identity = 88/111 (79.28%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 2   MKTSCIEDVIQIDGMKYDGPWSLKNETIFIDLMDEEVAKGNRPTTTFTRTSWTFMKEQLF 61
           MKT+CIEDV QID  K+DGPWS KNE+IFIDLM+EEVAKGNRPTTTFT+TSWT++KEQL+
Sbjct: 6   MKTNCIEDVTQIDASKFDGPWSFKNESIFIDLMEEEVAKGNRPTTTFTKTSWTYIKEQLY 65

Query: 62  AKTGYNYTHDQLKNKYNNLRQVYKDFKRLLSDITGKCWDPVLGTITLEEEQ 113
            +TGY YTH+QLKNKYN+LR  YK+FKRLL DI GK WDPVLGTITLEEEQ
Sbjct: 66  VRTGYAYTHEQLKNKYNSLRHRYKEFKRLLGDINGKGWDPVLGTITLEEEQ 116

[Close]

BLAST of Lag0031140 vs. NCBI nr
Match: XP_038904554.1 (L10-interacting MYB domain-containing protein-like isoform X3 [Benincasa hispida])

HSP 1 Score: 195.3 bits (495), Expect = 2.9e-46
Identity = 88/111 (79.28%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 2   MKTSCIEDVIQIDGMKYDGPWSLKNETIFIDLMDEEVAKGNRPTTTFTRTSWTFMKEQLF 61
           MKT+CIEDV QID  K+DGPWS KNE+IFIDLM+EEVAKGNRPTTTFT+TSWT++KEQL+
Sbjct: 1   MKTNCIEDVTQIDASKFDGPWSFKNESIFIDLMEEEVAKGNRPTTTFTKTSWTYIKEQLY 60

Query: 62  AKTGYNYTHDQLKNKYNNLRQVYKDFKRLLSDITGKCWDPVLGTITLEEEQ 113
            +TGY YTH+QLKNKYN+LR  YK+FKRLL DI GK WDPVLGTITLEEEQ
Sbjct: 61  VRTGYAYTHEQLKNKYNSLRHRYKEFKRLLGDINGKGWDPVLGTITLEEEQ 111

[Close]

BLAST of Lag0031140 vs. NCBI nr
Match: XP_038904552.1 (L10-interacting MYB domain-containing protein-like isoform X1 [Benincasa hispida])

HSP 1 Score: 195.3 bits (495), Expect = 2.9e-46
Identity = 88/111 (79.28%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 2   MKTSCIEDVIQIDGMKYDGPWSLKNETIFIDLMDEEVAKGNRPTTTFTRTSWTFMKEQLF 61
           MKT+CIEDV QID  K+DGPWS KNE+IFIDLM+EEVAKGNRPTTTFT+TSWT++KEQL+
Sbjct: 27  MKTNCIEDVTQIDASKFDGPWSFKNESIFIDLMEEEVAKGNRPTTTFTKTSWTYIKEQLY 86

Query: 62  AKTGYNYTHDQLKNKYNNLRQVYKDFKRLLSDITGKCWDPVLGTITLEEEQ 113
            +TGY YTH+QLKNKYN+LR  YK+FKRLL DI GK WDPVLGTITLEEEQ
Sbjct: 87  VRTGYAYTHEQLKNKYNSLRHRYKEFKRLLGDINGKGWDPVLGTITLEEEQ 137

[Close]

BLAST of Lag0031140 vs. NCBI nr
Match: XP_008443406.1 (PREDICTED: uncharacterized protein LOC103487000 isoform X1 [Cucumis melo])

HSP 1 Score: 178.7 bits (452), Expect = 2.8e-41
Identity = 82/111 (73.87%), Postives = 97/111 (87.39%), Query Frame = 0


Query: 2   MKTSCIEDVIQIDGMKYDGPWSLKNETIFIDLMDEEVAKGNRPTTTFTRTSWTFMKEQLF 61
           MK + IEDV QID  ++DGPWS KNETIFI+LM++EVAKGNRPTTTFT+TSWT++KEQL+
Sbjct: 27  MKINRIEDVHQIDVSRFDGPWSFKNETIFINLMEDEVAKGNRPTTTFTKTSWTYIKEQLY 86

Query: 62  AKTGYNYTHDQLKNKYNNLRQVYKDFKRLLSDITGKCWDPVLGTITLEEEQ 113
            KTGY Y+H+QLKNKYN+LR  YK+FK+LLSDI GK WDPVLGTITL E Q
Sbjct: 87  VKTGYAYSHEQLKNKYNSLRHRYKEFKKLLSDINGKGWDPVLGTITLGEAQ 137

[Close]

BLAST of Lag0031140 vs. NCBI nr
Match: KAE8651219.1 (hypothetical protein Csa_000986 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 2.8e-41
Identity = 82/111 (73.87%), Postives = 97/111 (87.39%), Query Frame = 0


Query: 2   MKTSCIEDVIQIDGMKYDGPWSLKNETIFIDLMDEEVAKGNRPTTTFTRTSWTFMKEQLF 61
           MK + IEDV QID  ++DGPWS KNETIFI+LM++EVAKGNRPTTTFT+TSWT++KEQL+
Sbjct: 27  MKINHIEDVNQIDVSRFDGPWSFKNETIFINLMEDEVAKGNRPTTTFTKTSWTYIKEQLY 86

Query: 62  AKTGYNYTHDQLKNKYNNLRQVYKDFKRLLSDITGKCWDPVLGTITLEEEQ 113
            KTGY Y+H+QLKNKYN+LR  YK+FK+LLSDI GK WDPVLGTITL E Q
Sbjct: 87  VKTGYAYSHEQLKNKYNSLRHRYKEFKKLLSDINGKGWDPVLGTITLGEAQ 137

[Close]

BLAST of Lag0031140 vs. ExPASy Swiss-Prot
Match: Q9FFJ8 (L10-interacting MYB domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=LIMYB PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.5e-09
Identity = 32/93 (34.41%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 20  GPWSLKNETIFIDLMDEEVAKGNRPTTTFTRTSWTFMKEQLFAKTGYNYTHDQLKNKYNN 79
           G WS     +F+DL+ +E  KGNRP T F +  W  +   +   TG  YT  QLKN ++ 
Sbjct: 168 GYWSPSTHKLFLDLLVQETLKGNRPDTHFNKEGWKTILGTINENTGLGYTRPQLKNHWDC 227

Query: 80  LRQVYKDFKRLLSDITGKCWDPVLGTITLEEEQ 113
            R+ +K + +L+   + K WDP   +    EE+
Sbjct: 228 TRKAWKIWCQLVGASSMK-WDPESRSFGATEEE 259

The following BLAST results are available for this feature:

BLAST of Lag0031140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904553.1	2.9e-46	79.28	L10-interacting MYB domain-containing protein-like isoform X2 [Benincasa hispida...	[more]
XP_038904554.1	2.9e-46	79.28	L10-interacting MYB domain-containing protein-like isoform X3 [Benincasa hispida...	[more]
XP_038904552.1	2.9e-46	79.28	L10-interacting MYB domain-containing protein-like isoform X1 [Benincasa hispida...	[more]
XP_008443406.1	2.8e-41	73.87	PREDICTED: uncharacterized protein LOC103487000 isoform X1 [Cucumis melo]	[more]
KAE8651219.1	2.8e-41	73.87	hypothetical protein Csa_000986 [Cucumis sativus]	[more]

BLAST of Lag0031140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFJ8	6.5e-09	34.41	L10-interacting MYB domain-containing protein OS=Arabidopsis thaliana OX=3702 GN...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 70..90
None	No IPR available	PANTHER	PTHR47584:SF14	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 19..111
None	No IPR available	PANTHER	PTHR47584	FAMILY NOT NAMED	coord: 19..111
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 22..111 e-value: 1.2E-18 score: 67.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0031140.1	Lag0031140.1	mRNA