Lag0031002 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0031002
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like
Location	chr11: 3739450 .. 3744537 (-)
RNA-Seq Expression	Lag0031002
Synteny	Lag0031002

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCAGGGTGGGGAATCACCGGTAACAAGGGCCGATGCTACGATTTCTGGATTGATTTCAGCGATTGTATGTCCCGCTGCCGAGAACCAAAGGACTGTGCTCTACTCCGTGAAGATTACCTCGAGTGCCTCCACCATTCCAAGGAGGTGAGACCTTTCATTTCACCTACTTTCTCGCTTCTGTTTTGTTTTTCCTTCAATTTTTCATGTATATGTTAGCTTAATTGCCTGAATAGGGATTAGATGTGTAGTTCCTTGATCCTTTGAGCTTTTGATGCCTAATTCGACCTTGCCTCATGTTTTCAACATCGTATCCGAAGGTGGCTGCCTGAGATTTGATCTAGATCTGTTTTTTGTATGTAACTTGTTCATTGAACAAATTTCTGGAGAAACTTGAATTTGCGACTACTTGGATTCTTGTGGTTTTAGATGTTAGTGATCGATTAGGGAAAGGTTGAGTCCTATCAATGAAAAGAAGAAGGTTTTGTGTCTTCAAGTTCCAGTTTCGCATGGTTTTTCAATATTGTGATGAATGTTTTAGAGTTGTCGTCATTAAGGATGAATGTTTTACAAAAGCACGGTGGAGCTCTCAGTTCAAGCCTCTTACTTAATTAGGTCGGGTTATCTATTTTTGCTTTAAGTGAACGGTTTGCCACACATTGCGTGTTATTGATTATCACGGCTGCCTCTTTGGTACTAGATATGGATTAGTGAAAGTTCTAGTCTGTTTGGGCATTTCTGTTAAGTCACATTAGCATGATTTTATGTTTCTGAAGATACATCCTTTTGGAACTGTGCATTCTGGCTCTAGAGAAATTATTCTATGAGGCTTAAACAATGTAACATACAGTTTTATAACCTTGGATGTGAGAAAGAGAAACAAAAAATTATGATTTAACCATGCATCTTAGGGTTTAGAGGGGACAGTTACAATGTAGTGGTAGTGGCCACATTGAATATTCTTTACCACTCTAACAAATGATCATTAAAATAAAACATCATACATTTACGTTCGTGTGGATACTACTTATCTAAGAAGATTTTTTTTTTTTTTGGAAAGATTATCTATGAAGATTTGAATTTGTGAAAATCCACTTAAACAACATCAAGCAAGAAAACTATGATAAGTTGATTTTTGGATGATGTGGCTGCTTTATGCATGCTTATTGAAACATGAAAGGAATAATAGAAAAATGTCTCTATGTGGGAGAAAAACAACTTTAATTACAAACAATGAGGAAATACAAAAGTAAGCTCTTATGTTGTTGGGGACATTCTATCTTGATGAGCATTTCACTATGGGTTGACCTAGTGGTCAATAAGGGCCCATGTAAATAATAAAGGCTTGAGAGGAAATGAGTTCAAGCCACGGTAGGTACCTACATAGGATTTAATATCCTATGAATTTCATTGGCAACCAAATATAGTAGAGTTAGGTGGTTGTTTCATGGGATTAGTCAAGATGTACGCAAGCTGATTTTGACACTCTGGATTTAAAAAAGAACTATCTCTATGAGCACTTTAATATTTACTTAACAGCATCAAGCTTTGCAACTATAGTCTTTCAATATTATTCCTCTTGGTGCTGAAATCCTCCACCTTCATCTCATTTTCAAATTTCATTTTCTGATATTCTGCCTATTTTCCACTGTTATTTCTTAGCTTTTGGGGGCACTTGGATCTCTTACTACTTCCTAATTTTCAACTTTTTTGTTGCATAATTGATAGATTCGTTCCTTTAATGTTGTCACTGGCACCATTAGCTTCGCATATTTGAGAATTTAAATAAACCTCTAGCCTACTTTTGTTAGTTTTTATGGCTTGGAAAAGTTACTCCCCTGTGCACATGAGTGGCCTTTTCCCCCCACTTTTGGTTTTGGTGTTGGTACCTGCTACTTGTCTAAAATTGTCTTCACTGTTAGTTCTTCTGAATGATTCTGCCTTGTGTATGATTTCAGGAAAGTACATGATAATATGAACAATTTTGTTCCGTGACTGTGAGAATAGCATTCACTTATCTTCCTTCATTCATGACATTTTCTATAAACTTGGTACTGATGATTTGTATTTGTAAACTGCTATTGCTCTATATTTCCATGCTTGGTATCAACCTCTTAACTTGTTTACTATTTCTTTTTTCTTTTTCTTCTTTTCCCCTTCTCAAGTGGTTTTTCTCTCTCAATTTTACTTTCATTTATCTTGGAGGTCGGTGGATTCCGATAAAAATTGTCTTTATTTTTTCGCTTAAGTCTAGCACCAAGTAACAAAAGCCACTGTGCTAGCTTTTTGTAGGAATAGGGTTATTTTTTTGAGCACGATCATATATTCACTATGCATTCAGATTAAAGAAAAAAACACCAGGCACAGGAGGAATAAAACATCCCAATATAAGGTGGCTCCAAAAATAGTAATTGGATTGAGGTTTATTTCTATCTCAAGAAAGCTATTTATCCCACTAAAATCAGAAAAGCTCATCTGAATGCATGGTGAATCTATGATCATGCTAAAAAAGTAGCACTAAAATCATTTCAATGTCAAGAAAACTATGTTCCTGTGCCTGTTGTGAGTTGTGTGATCTCTGCAACTGCTATCACGTACTATGTATAAGTTTATTATTTCACCTGTATGCACAGTTTTAGTGTTCATGCCGGAAAAGGTAGATAGGTGGATTTTTATTTTTATTTATTTATTTTTAAATTTTGCATCTATAAAATATAACCATCGGGTTGGTTCGTTAATCAAAAGTGCAAGCAGGTTACCCTAGATGCCTTTGAGGTCTCAGTTGTGGTTCAAAAATTAAATTATAGCCACCATCTACCTAAGATATTAAAAATATTTAACTAGTATTCAGACACACGATATATTGTAGGATCATGCGATTGTTCCATACAATTAGTTGGAAACTTGGGATGCATGTAAGGGAAAAAATCATTGAATCTGTAGAGAACCAAAATTTAAAAAGACTCCTATCGGGAGTGAGTTTAGCTGGTACTTGATTCTATCAATTACTAATTTGACCTTGATAACATAGCCACACATAAATTGCTTAGATTATGTTTGTTGTATTATTCTTGCAGTTGTTTATTTAACATAAAAATTAGTTGAATGAATTCATGGAACAGGAGAAAAACTGAACCCCTAAATTTTCACTTGTAAAAATTAAACCCTCAAACTTTAAAAATTGTAAAAATTGAACCCTTAAACTTTCAATCATAAAAATTAAACCCTCAAACTTTGATAAATATAGAAATTGGATCCATTTAATTATTTCATTTCTCCCTCATTTTTCATCTTTCTCTCTCCTCCTTCCACCCGTTCTCTTTCTGAAGAAGAAAGATTCACAAGAAAGTTATCCAAATAGACTTGTGAAAAAGGAAGAGAAAAAGCCCGTTCAAACCGCTGCCATTGAAGCCCTCGAAGAAGAAGAAGAAAGTGGACGTTTGTGGAACATCTATGGCGCCAGTGTTTTAAAAGGCGCGCCCGGGCGCGCGCCTAGGCGCAAGGCGCAACATTAGCGCCTCGCTTCGAAGATAGGCGCAAGGCGCAACATGACCGGGCAGCGAGACCCCCGTACTTGTCGTTCGGAGTGTCAAATATCATATTCAAGGCATATATTTTTTGTGGAGTATTGACATCATCATACTTGGTCGTTTGGAGTGTCAGAAGGCATATTAACAATACTAAACTCACTATTTTTTGTGGAGTATTGACATTTGACTCTATGTTGGAAGACTAATATTTGAACCTTATTTATCTTTTATCTATTTTTCTTAGTTAAAAATTCATTACTTGCCATGAAAGTGTTTTATATACATGTATATATTTTTGTAAATTTTTTTTCTATATGGTGCGTCTTACATAATAAAGCCCGCGCCTTTTCGTGCGCCTTGCGCCTAGGCTCCAGGAGGCCATTGCGCCTTAGTGCGCCTTGAGCCTTTTAAAACACTGTATGGCGCTTGTGTCTGTTATACGCAGAGGGAAAATGGGGATTGAAGAGAGTGAGAAAACACAAAACAGTAAACTAATAATGCAAGGGAAAGGGCAAAAACCACAGTGGAGTGATGATTCTGAAGCATTTTTGGATGGGTTAAATTAAATTAAATGGACACGAAGAAAGTTTCACGAAATGTAAATAATATTAAATTCTCCTCCTTCCACCCATTCTCTTTCTCTCCTCTTTTCATTTTGTGCCCGACTTTTGATCCACACAGAGTCCCAATTTCCATCCACTTCTTCTACCGTCGACTACACCCTTCAAGTTCCAACTTAGTTCTCGTCCTCAATCATTGGAACTGCAACTTTTTTCTTCAGAAAGAGAATGGGTGCAAAGAGGAGAGGAAGAGAGAATATGGAAGGAAGGAGGAGGGTTGAAAGAGGAGCGGAAGAGAGAATAGGGAAGGACGAGAGAGAAAAAGAGATGAAATATGAGGGAGAATTGAAGTAATTATATGGATCCAATTTTTATATATATGATAGTTTAAGGGTTTAATTTTTACAATTGAAAGTTTAGGGGTTCACTTTTTACAATTCTTAAAGTTTGAGGGTTTCATTTTTACACTTGAAAGTTTAGGGGTGTACTTGTTACAACCACTGTACTTCAAGGGTGGTTTTTGCAATTTGCCCTTTTATTTTTGTATAATGAGGTAAATATCTGGAATGAAACCCAGATTTCTAAGTTGTACCTATCATATTTGTTATGTACCTCTCTACTTGTATGATTATATTAGTGAGGAGTTTTATGGTGGCTCTGAAGAATTACTCTTTTTTTGGAGAGGTTAACAAAAAAGAAATTTAGTTGAAGTGTTTAATTACAGATATTCATTATATAAGGATTAAGTATGTCGTTGTTTAAGAATAGGAACACTTGGATAACCTTTCACAATGGAAGCCGAAGGAGTATGATCTACTTTTATTACAAATGGTTCTGCGTGATTTGTACCAATCTGTTCTAATTTAATTTTGCTTGTTTGAAATACCTTACAGTTCCAAAGAAGAAACCGTATTTATAAGGAGGAGCAGCGTAAACTAAGAGCAGCAGAACGGGAGGCCAAAGAGGGTAAACATGTTGATGCTGCTCATGCATAG

mRNA sequence

ATGGCATCAGGGTGGGGAATCACCGGTAACAAGGGCCGATGCTACGATTTCTGGATTGATTTCAGCGATTGTATGTCCCGCTGCCGAGAACCAAAGGACTGTGCTCTACTCCGTGAAGATTACCTCGAGTGCCTCCACCATTCCAAGGAGTTCCAAAGAAGAAACCGTATTTATAAGGAGGAGCAGCGTAAACTAAGAGCAGCAGAACGGGAGGCCAAAGAGGGTAAACATGTTGATGCTGCTCATGCATAG

Coding sequence (CDS)

ATGGCATCAGGGTGGGGAATCACCGGTAACAAGGGCCGATGCTACGATTTCTGGATTGATTTCAGCGATTGTATGTCCCGCTGCCGAGAACCAAAGGACTGTGCTCTACTCCGTGAAGATTACCTCGAGTGCCTCCACCATTCCAAGGAGTTCCAAAGAAGAAACCGTATTTATAAGGAGGAGCAGCGTAAACTAAGAGCAGCAGAACGGGAGGCCAAAGAGGGTAAACATGTTGATGCTGCTCATGCATAG

Protein sequence

MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKEEQRKLRAAEREAKEGKHVDAAHA

Homology

[Close]

BLAST of Lag0031002 vs. NCBI nr
Match: XP_022155272.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like [Momordica charantia])

HSP 1 Score: 176.0 bits (445), Expect = 1.3e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60
          MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE
Sbjct: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60

Query: 61 EQRKLRAAEREAKEGKHVDAAHA 84
          EQRKLRAAEREAKEGKHVDAAHA
Sbjct: 61 EQRKLRAAEREAKEGKHVDAAHA 83

[Close]

BLAST of Lag0031002 vs. NCBI nr
Match: XP_038905985.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Benincasa hispida])

HSP 1 Score: 174.9 bits (442), Expect = 3.0e-40
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60
          MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE
Sbjct: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60

Query: 61 EQRKLRAAEREAKEGKHVDAAHA 84
          EQRKLRAAER+AKEGKHVDAAHA
Sbjct: 61 EQRKLRAAERDAKEGKHVDAAHA 83

[Close]

BLAST of Lag0031002 vs. NCBI nr
Match: XP_011652934.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Cucumis sativus] >KGN52808.1 hypothetical protein Csa_015424 [Cucumis sativus])

HSP 1 Score: 172.2 bits (435), Expect = 1.9e-39
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60
          MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDC+LLREDYLECLHH KEFQRRNR+YKE
Sbjct: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCSLLREDYLECLHHFKEFQRRNRVYKE 60

Query: 61 EQRKLRAAEREAKEGKHVDAAHA 84
          EQRKLRAAEREAKEGKHVDAAHA
Sbjct: 61 EQRKLRAAEREAKEGKHVDAAHA 83

[Close]

BLAST of Lag0031002 vs. NCBI nr
Match: XP_022948762.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like [Cucurbita moschata] >XP_022998534.1 NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like [Cucurbita maxima] >KAG7036666.1 NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171.4 bits (433), Expect = 3.3e-39
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60
          MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRVYKE 60

Query: 61 EQRKLRAAEREAKEGKHVDAAHA 84
          EQRKLRAA+ EAKEGKHVDAAHA
Sbjct: 61 EQRKLRAAKGEAKEGKHVDAAHA 83

[Close]

BLAST of Lag0031002 vs. NCBI nr
Match: XP_023521877.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.9 bits (429), Expect = 9.5e-39
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60
          MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRVYKE 60

Query: 61 EQRKLRAAEREAKEGKHVDAAHA 84
          EQRKLR A+ EAKEGKHVDAAHA
Sbjct: 61 EQRKLRVAKGEAKEGKHVDAAHA 83

[Close]

BLAST of Lag0031002 vs. ExPASy Swiss-Prot
Match: Q9LZI6 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B OS=Arabidopsis thaliana OX=3702 GN=At3g62790 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.5e-34
Identity = 66/74 (89.19%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60
          MASGWGITGNKGRCYDFW+DFS+CMS CREPKDC LLREDYLECLHHSKEFQRRNRIYKE
Sbjct: 1  MASGWGITGNKGRCYDFWMDFSECMSHCREPKDCTLLREDYLECLHHSKEFQRRNRIYKE 60

Query: 61 EQRKLRAAEREAKE 75
          EQRKLRAA R+ +E
Sbjct: 61 EQRKLRAASRKGEE 74

[Close]

BLAST of Lag0031002 vs. ExPASy Swiss-Prot
Match: O82238 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-A OS=Arabidopsis thaliana OX=3702 GN=At2g47690 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.3e-34
Identity = 69/80 (86.25%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1   MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60
           MASGWGITGNKGRCYDFW+DFS+CMS CREPKDC LLREDYLECLHHSKEFQRRNRIYKE
Sbjct: 36  MASGWGITGNKGRCYDFWMDFSECMSHCREPKDCTLLREDYLECLHHSKEFQRRNRIYKE 95

Query: 61  EQRKLRAAER---EAKEGKH 78
           EQRKLRAA R   EA +G H
Sbjct: 96  EQRKLRAASRKGEEAGDGTH 115

The following BLAST results are available for this feature:

BLAST of Lag0031002 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155272.1	1.3e-40	100.00	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like [Momordica charanti...	[more]
XP_038905985.1	3.0e-40	98.80	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Benincasa hispida]	[more]
XP_011652934.1	1.9e-39	96.39	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Cucumis sativus] >KGN52...	[more]
XP_022948762.1	3.3e-39	96.39	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like [Cucurbita moschata...	[more]
XP_023521877.1	9.5e-39	95.18	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like [Cucurbita pepo sub...	[more]

BLAST of Lag0031002 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZI6	2.5e-34	89.19	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B OS=Arabidopsis thaliana ...	[more]
O82238	3.3e-34	86.25	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-A OS=Arabidopsis thaliana ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 51..78
None	No IPR available	PANTHER	PTHR15224:SF5	BNAC04G00180D PROTEIN	coord: 1..82
None	No IPR available	PROSITE	PS51808	CHCH	coord: 11..52 score: 11.175484
IPR019342	NADH:ubiquinone oxidoreductase, iron-sulphur subunit 5	PFAM	PF10200	Ndufs5	coord: 12..65 e-value: 1.8E-6 score: 28.1
IPR019342	NADH:ubiquinone oxidoreductase, iron-sulphur subunit 5	PANTHER	PTHR15224	NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 5	coord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0031002.1	Lag0031002.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032981	mitochondrial respiratory chain complex I assembly
cellular_component	GO:0005747	mitochondrial respiratory chain complex I