Lag0029771 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0029771
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	U11/U12 small nuclear ribonucleoprotein 31 kDa protein
Location	chr8: 41935460 .. 41936221 (-)
RNA-Seq Expression	Lag0029771
Synteny	Lag0029771

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCGAAAGGGGAAGAGAACCAACAACCCTAATAGCGACAGCGACGACGACGAAACCTTCTATTACCGATATCCCTCCGCCGCCTCTTCTGCCCCGCCGCCATTGTCGTCTTCACAGTCGCACTCACACTCTTCCACCAAGTTTGGCGGTGGCTCTGGAGGTTTGGTTCCTTCGAAGTCTACTGTTTACGCTTCCAATTTCGACTACTCCCTCACCAATTCCGACCTGCACACTCTCTTCTCCACATTTGGTAAGATCGCTCGCGTTACGGTGTTGAAAGATCGCCAGACTCGCAAGTCTCGCGGTGTTGCTTTCATTCAGTTTATTTCTCAGGACGACGCGGTCAAGGCCGCGAAACAGATGCACGGGAAGATTTTGAATGGGCGTGTTCTGAAGGCTGCTATAGCGACTGATAATGGTCGCGCCGCTGAATTTATTAGGAAGAGGGTTTATAAGGATAAGAGTAGGTGCTACGAGTGCGGTGCAGTTGATGGGCATTTGTCTTATGAGTGCCCTAAAAATCAATTGGGGCCAAGAGAACGACCAGAACCGAAGCGGGTGAGAAGGGGTGGAGCCGGTGCTAGGCACGAGGAGGACTGGGGATCGGATGTTGGAGAAGGGTTCGAGGATGACAATTGGGCCTCGGTGGTGGATGGAGATGCGGACCAGAGACTGCTGACTGCCGGTGAAAACGTTGTAGAGAAGAAAAAGGCGAAGAAAGCGAGTTATTTTAGTGACGAGAGTGGTGAAGATGAGTAA

mRNA sequence

ATGGCGCGAAAGGGGAAGAGAACCAACAACCCTAATAGCGACAGCGACGACGACGAAACCTTCTATTACCGATATCCCTCCGCCGCCTCTTCTGCCCCGCCGCCATTGTCGTCTTCACAGTCGCACTCACACTCTTCCACCAAGTTTGGCGGTGGCTCTGGAGGTTTGGTTCCTTCGAAGTCTACTGTTTACGCTTCCAATTTCGACTACTCCCTCACCAATTCCGACCTGCACACTCTCTTCTCCACATTTGGTAAGATCGCTCGCGTTACGGTGTTGAAAGATCGCCAGACTCGCAAGTCTCGCGGTGTTGCTTTCATTCAGTTTATTTCTCAGGACGACGCGGTCAAGGCCGCGAAACAGATGCACGGGAAGATTTTGAATGGGCGTGTTCTGAAGGCTGCTATAGCGACTGATAATGGTCGCGCCGCTGAATTTATTAGGAAGAGGGTTTATAAGGATAAGAGTAGGTGCTACGAGTGCGGTGCAGTTGATGGGCATTTGTCTTATGAGTGCCCTAAAAATCAATTGGGGCCAAGAGAACGACCAGAACCGAAGCGGGTGAGAAGGGGTGGAGCCGGTGCTAGGCACGAGGAGGACTGGGGATCGGATGTTGGAGAAGGGTTCGAGGATGACAATTGGGCCTCGGTGGTGGATGGAGATGCGGACCAGAGACTGCTGACTGCCGGTGAAAACGTTGTAGAGAAGAAAAAGGCGAAGAAAGCGAGTTATTTTAGTGACGAGAGTGGTGAAGATGAGTAA

Coding sequence (CDS)

ATGGCGCGAAAGGGGAAGAGAACCAACAACCCTAATAGCGACAGCGACGACGACGAAACCTTCTATTACCGATATCCCTCCGCCGCCTCTTCTGCCCCGCCGCCATTGTCGTCTTCACAGTCGCACTCACACTCTTCCACCAAGTTTGGCGGTGGCTCTGGAGGTTTGGTTCCTTCGAAGTCTACTGTTTACGCTTCCAATTTCGACTACTCCCTCACCAATTCCGACCTGCACACTCTCTTCTCCACATTTGGTAAGATCGCTCGCGTTACGGTGTTGAAAGATCGCCAGACTCGCAAGTCTCGCGGTGTTGCTTTCATTCAGTTTATTTCTCAGGACGACGCGGTCAAGGCCGCGAAACAGATGCACGGGAAGATTTTGAATGGGCGTGTTCTGAAGGCTGCTATAGCGACTGATAATGGTCGCGCCGCTGAATTTATTAGGAAGAGGGTTTATAAGGATAAGAGTAGGTGCTACGAGTGCGGTGCAGTTGATGGGCATTTGTCTTATGAGTGCCCTAAAAATCAATTGGGGCCAAGAGAACGACCAGAACCGAAGCGGGTGAGAAGGGGTGGAGCCGGTGCTAGGCACGAGGAGGACTGGGGATCGGATGTTGGAGAAGGGTTCGAGGATGACAATTGGGCCTCGGTGGTGGATGGAGATGCGGACCAGAGACTGCTGACTGCCGGTGAAAACGTTGTAGAGAAGAAAAAGGCGAAGAAAGCGAGTTATTTTAGTGACGAGAGTGGTGAAGATGAGTAA

Protein sequence

MARKGKRTNNPNSDSDDDETFYYRYPSAASSAPPPLSSSQSHSHSSTKFGGGSGGLVPSKSTVYASNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRVRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTAGENVVEKKKAKKASYFSDESGEDE

Homology

[Close]

BLAST of Lag0029771 vs. NCBI nr
Match: XP_038883985.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Benincasa hispida])

HSP 1 Score: 470.7 bits (1210), Expect = 7.9e-129
Identity = 242/259 (93.44%), Postives = 246/259 (94.98%), Query Frame = 0


Query: 1   MARKGKRTNNPNSDSDDDETFYYRYPSAASSAPPPLS------SSQSHSHSSTKFGGGSG 60
           MARKGKRTNNPNSDS+DDETFYYRYPSAASSAPPP S      SSQSHSHSSTKF GGSG
Sbjct: 1   MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSASQSHFSSQSHSHSSTKFSGGSG 60

Query: 61  GLVPSKSTVYASNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDD 120
           GLVPSKSTVY SNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVKAAKQM+GKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKAAKQMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRVRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTAGENVV 240
           NQLGPRERPEPKR RRGG GARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLT GENVV
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVV 240

Query: 241 EKKKAKKASYFSDESGEDE 254
           EKKKAKKASYFSDES ED+
Sbjct: 241 EKKKAKKASYFSDESDEDD 259

[Close]

BLAST of Lag0029771 vs. NCBI nr
Match: XP_008456528.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo] >KAA0036504.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo var. makuwa] >TYJ99977.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 465.3 bits (1196), Expect = 3.3e-127
Identity = 240/259 (92.66%), Postives = 245/259 (94.59%), Query Frame = 0


Query: 1   MARKGKRTNNPNSDSDDDETFYYRYPSAASSAPP-PLS-----SSQSHSHSSTKFGGGSG 60
           MARKGK+TNNP SDSD+DETFYYRYPSAASSAPP P S     SSQSHSHSSTK GGGSG
Sbjct: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYASNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDD 120
           GLVPSKSTVY SNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRVRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTAGENVV 240
           NQLGPRERPEPKR RRGG GARHEEDWGSDVGE FEDDNWASVVDGDADQRLLT GEN+V
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV 240

Query: 241 EKKKAKKASYFSDESGEDE 254
           EKKKAKKASYFSDESGED+
Sbjct: 241 EKKKAKKASYFSDESGEDD 259

[Close]

BLAST of Lag0029771 vs. NCBI nr
Match: XP_022993724.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita maxima] >XP_022993726.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita maxima])

HSP 1 Score: 456.1 bits (1172), Expect = 2.0e-124
Identity = 233/259 (89.96%), Postives = 237/259 (91.51%), Query Frame = 0


Query: 1   MARKGKRTNNPNSDSDDDETFYYRYPSAASSAPPPLS------SSQSHSHSSTKFGGGSG 60
           M+RKGKR  NPNSDSDDDETFYYRYPSA SSAPPP S      SSQSHSHSSTK GGGSG
Sbjct: 1   MSRKGKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYASNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDD 120
           GLVPSKSTVY SNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRVRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTAGENVV 240
           NQLGPRERPEPKRVR+GG GARHEEDWGSD GEGFEDD WASVVDGDADQRLLT+ ENVV
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDKWASVVDGDADQRLLTSSENVV 240

Query: 241 EKKKAKKASYFSDESGEDE 254
           EKKKAKKASYFSDESGEDE
Sbjct: 241 EKKKAKKASYFSDESGEDE 259

[Close]

BLAST of Lag0029771 vs. NCBI nr
Match: KAG7016330.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 455.3 bits (1170), Expect = 3.5e-124
Identity = 233/259 (89.96%), Postives = 237/259 (91.51%), Query Frame = 0


Query: 1   MARKGKRTNNPNSDSDDDETFYYRYPSAASSAPPPLS------SSQSHSHSSTKFGGGSG 60
           M+RK KR  NPNSDSDDDETFYYRYPSA SSAPPP S      SSQSHSHSSTK GGGSG
Sbjct: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYASNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDD 120
           GLVPSKSTVY SNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRVRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTAGENVV 240
           NQLGPRERPEPKRVR+GG GARHEEDWGSD GEGFEDDNWASVVDGDADQRLLT+ ENVV
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENVV 240

Query: 241 EKKKAKKASYFSDESGEDE 254
           EKKKAKKASYFSDESGEDE
Sbjct: 241 EKKKAKKASYFSDESGEDE 259

[Close]

BLAST of Lag0029771 vs. NCBI nr
Match: XP_022939952.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita moschata] >XP_022939953.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita moschata])

HSP 1 Score: 455.3 bits (1170), Expect = 3.5e-124
Identity = 233/259 (89.96%), Postives = 237/259 (91.51%), Query Frame = 0


Query: 1   MARKGKRTNNPNSDSDDDETFYYRYPSAASSAPPPLS------SSQSHSHSSTKFGGGSG 60
           M+RK KR  NPNSDSDDDETFYYRYPSA SSAPPP S      SSQSHSHSSTK GGGSG
Sbjct: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYASNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDD 120
           GLVPSKSTVY SNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRVRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTAGENVV 240
           NQLGPRERPEPKRVR+GG GARHEEDWGSD GEGFEDDNWASVVDGDADQRLLT+ ENVV
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENVV 240

Query: 241 EKKKAKKASYFSDESGEDE 254
           EKKKAKKASYFSDESGEDE
Sbjct: 241 EKKKAKKASYFSDESGEDE 259

[Close]

BLAST of Lag0029771 vs. ExPASy Swiss-Prot
Match: Q9CAE4 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP31 PE=2 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 4.6e-71
Identity = 150/261 (57.47%), Postives = 183/261 (70.11%), Query Frame = 0


Query: 6   KRTNNPNSDSDDDETFYYRYPSAASSAPPPLSSSQSHSHSSTKFGGGSGGLVPSKSTVYA 65
           K+    +SD ++D+TFYYRY S A+  P       S S  S+  GGGSGGL PSKST+Y 
Sbjct: 2   KKRKIHHSDDEEDDTFYYRYSSVAAPPPSNPKHQPSSSAKSSAPGGGSGGLAPSKSTLYV 61

Query: 66  SNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDDAVKAAKQMHGK 125
           SN D+SLTNSD+HTLFSTFGK+ARVTVLKDR TR+SRGVAF+ ++S++DA KAA+ M  K
Sbjct: 62  SNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMDAK 121

Query: 126 ILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEP 185
           ILNGR L  +IA DNGRA+EFI+KRVYKDKSRCYECG  +GHLSYECPKNQLGPRERP P
Sbjct: 122 ILNGRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGD-EGHLSYECPKNQLGPRERPPP 181

Query: 186 KRV---RRGGAGARHEEDWGSD------VGEGFEDDNWASVVDGDADQRLLTAGENVVE- 245
            +    R+   G   E  W +         E FE++NWASVVD +A +RL        E 
Sbjct: 182 PKKRGRRKEEEGEAEEISWSAAAPSLAVAEEEFEEENWASVVDNEAGERLRKREAEEEEE 241

Query: 246 ---KKKAKKASYFSDESGEDE 254
              K+K KK SYFSDES +++
Sbjct: 242 RRMKRKEKKVSYFSDESDDED 261

[Close]

BLAST of Lag0029771 vs. ExPASy Swiss-Prot
Match: Q5SP50 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Danio rerio OX=7955 GN=zcrb1 PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.7e-41
Identity = 99/213 (46.48%), Postives = 132/213 (61.97%), Query Frame = 0


Query: 53  SGGLVPSKSTVYASNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQ 112
           SGGL PSKSTVY SN  +SLTNSD+H L S +GK+ +VT++KD+ TR S+GVAF+ F+ +
Sbjct: 2   SGGLAPSKSTVYVSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDR 61

Query: 113 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 172
           + A   ++ ++ K L GR++KA+IA DNGRAAEFIRKR Y DKS+CYECG  +GHLSY C
Sbjct: 62  ESAYNCSRSLNNKQLFGRMVKASIAIDNGRAAEFIRKRNYTDKSKCYECGE-EGHLSYAC 121

Query: 173 PKNQLGPRERPEPKRVRRGGAGARHEEDWGSDVGEGFEDDNWASVVDG---------DAD 232
           PKN LG RE P  K  ++     + EE    D  E  ED    S+            + +
Sbjct: 122 PKNLLGEREPPPKKEKKKKKKVQQPEEVEPEDSEEEGEDPALDSLSQAIAFQQARIEEEE 181

Query: 233 QRLLTAGENV--------VEKKKAKKASYFSDE 249
           +R   A E+           K + KK++YFSDE
Sbjct: 182 KRRKQAAEDASQASTSEDTHKPRIKKSAYFSDE 213

[Close]

BLAST of Lag0029771 vs. ExPASy Swiss-Prot
Match: Q499V6 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Zcrb1 PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.7e-41
Identity = 99/212 (46.70%), Postives = 134/212 (63.21%), Query Frame = 0


Query: 53  SGGLVPSKSTVYASNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQ 112
           SGGL PSKSTVY SN  +SLTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 113 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 172
           D A+   + ++ K L GRV+KA+IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 173 PKNQLGPRERPEPKRVRRGGAGARHEEDWGS-DVGEGFEDD------------NWASVVD 232
           PKN LG RE P+ K  ++       EE+    +V E   +D              A + +
Sbjct: 122 PKNMLGEREPPKKKEKKKKKKVPEPEEEIEEVEVSEEEGEDPALDSLSQAIAFQQAKIEE 181

Query: 233 GDADQRLLTAGENVVE---KKKAKKASYFSDE 249
                R  T G +  +   + + KK++YFSDE
Sbjct: 182 EQNKWRPSTGGPSTSDDSRRPRIKKSAYFSDE 212

[Close]

BLAST of Lag0029771 vs. ExPASy Swiss-Prot
Match: Q8TBF4 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Homo sapiens OX=9606 GN=ZCRB1 PE=1 SV=2)

HSP 1 Score: 170.2 bits (430), Expect = 2.9e-41
Identity = 99/214 (46.26%), Postives = 131/214 (61.21%), Query Frame = 0


Query: 53  SGGLVPSKSTVYASNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQ 112
           SGGL PSKSTVY SN  +SLTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 113 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 172
           D A    + ++ K L GRV+KA+IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 173 PKNQLGPRERPEPKRVRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTAGEN 232
           PKN LG RE P+ K  ++       EE+   +  E  ED+     +D  +        + 
Sbjct: 122 PKNMLGEREPPKKKEKKKKKKAPEPEEE--IEEVEESEDEGEDPALDSLSQAIAFQQAKI 181

Query: 233 VVEKKK------------------AKKASYFSDE 249
             E+KK                   KK++YFSDE
Sbjct: 182 EEEQKKWKPSSGVPSTSDDSRRPRIKKSTYFSDE 212

[Close]

BLAST of Lag0029771 vs. ExPASy Swiss-Prot
Match: Q9CZ96 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Mus musculus OX=10090 GN=Zcrb1 PE=1 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 6.5e-41
Identity = 98/212 (46.23%), Postives = 134/212 (63.21%), Query Frame = 0


Query: 53  SGGLVPSKSTVYASNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQ 112
           SGGL PSKSTVY SN  +SLTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 113 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 172
           D A+   + ++ K L GRV+KA+IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 173 PKNQLGPRERPEPKRVRRGGAGARHEEDWGS-DVGEGFEDD------------NWASVVD 232
           PKN LG RE P+ K  ++       EE+    +V E   +D              A + +
Sbjct: 122 PKNMLGEREPPKKKEKKKKRKLPEPEEEIEEVEVSEEEGEDPALDSLSQAIAFQQAKIEE 181

Query: 233 GDADQRLLTAGENVVE---KKKAKKASYFSDE 249
             +  R    G +  +   + + KK++YFSDE
Sbjct: 182 EQSKWRPNPGGPSTSDDSRRPRIKKSAYFSDE 212

[Close]

BLAST of Lag0029771 vs. ExPASy TrEMBL
Match: A0A5A7SYZ1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00210 PE=4 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 1.6e-127
Identity = 240/259 (92.66%), Postives = 245/259 (94.59%), Query Frame = 0


Query: 1   MARKGKRTNNPNSDSDDDETFYYRYPSAASSAPP-PLS-----SSQSHSHSSTKFGGGSG 60
           MARKGK+TNNP SDSD+DETFYYRYPSAASSAPP P S     SSQSHSHSSTK GGGSG
Sbjct: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYASNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDD 120
           GLVPSKSTVY SNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRVRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTAGENVV 240
           NQLGPRERPEPKR RRGG GARHEEDWGSDVGE FEDDNWASVVDGDADQRLLT GEN+V
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV 240

Query: 241 EKKKAKKASYFSDESGEDE 254
           EKKKAKKASYFSDESGED+
Sbjct: 241 EKKKAKKASYFSDESGEDD 259

[Close]

BLAST of Lag0029771 vs. ExPASy TrEMBL
Match: A0A1S3C324 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496454 PE=4 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 1.6e-127
Identity = 240/259 (92.66%), Postives = 245/259 (94.59%), Query Frame = 0


Query: 1   MARKGKRTNNPNSDSDDDETFYYRYPSAASSAPP-PLS-----SSQSHSHSSTKFGGGSG 60
           MARKGK+TNNP SDSD+DETFYYRYPSAASSAPP P S     SSQSHSHSSTK GGGSG
Sbjct: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYASNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDD 120
           GLVPSKSTVY SNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRVRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTAGENVV 240
           NQLGPRERPEPKR RRGG GARHEEDWGSDVGE FEDDNWASVVDGDADQRLLT GEN+V
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV 240

Query: 241 EKKKAKKASYFSDESGEDE 254
           EKKKAKKASYFSDESGED+
Sbjct: 241 EKKKAKKASYFSDESGEDD 259

[Close]

BLAST of Lag0029771 vs. ExPASy TrEMBL
Match: A0A6J1JX53 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111489639 PE=4 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 9.8e-125
Identity = 233/259 (89.96%), Postives = 237/259 (91.51%), Query Frame = 0


Query: 1   MARKGKRTNNPNSDSDDDETFYYRYPSAASSAPPPLS------SSQSHSHSSTKFGGGSG 60
           M+RKGKR  NPNSDSDDDETFYYRYPSA SSAPPP S      SSQSHSHSSTK GGGSG
Sbjct: 1   MSRKGKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYASNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDD 120
           GLVPSKSTVY SNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRVRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTAGENVV 240
           NQLGPRERPEPKRVR+GG GARHEEDWGSD GEGFEDD WASVVDGDADQRLLT+ ENVV
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDKWASVVDGDADQRLLTSSENVV 240

Query: 241 EKKKAKKASYFSDESGEDE 254
           EKKKAKKASYFSDESGEDE
Sbjct: 241 EKKKAKKASYFSDESGEDE 259

[Close]

BLAST of Lag0029771 vs. ExPASy TrEMBL
Match: A0A6J1FIA0 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111445663 PE=4 SV=1)

HSP 1 Score: 455.3 bits (1170), Expect = 1.7e-124
Identity = 233/259 (89.96%), Postives = 237/259 (91.51%), Query Frame = 0


Query: 1   MARKGKRTNNPNSDSDDDETFYYRYPSAASSAPPPLS------SSQSHSHSSTKFGGGSG 60
           M+RK KR  NPNSDSDDDETFYYRYPSA SSAPPP S      SSQSHSHSSTK GGGSG
Sbjct: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYASNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDD 120
           GLVPSKSTVY SNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRVRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTAGENVV 240
           NQLGPRERPEPKRVR+GG GARHEEDWGSD GEGFEDDNWASVVDGDADQRLLT+ ENVV
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENVV 240

Query: 241 EKKKAKKASYFSDESGEDE 254
           EKKKAKKASYFSDESGEDE
Sbjct: 241 EKKKAKKASYFSDESGEDE 259

[Close]

BLAST of Lag0029771 vs. ExPASy TrEMBL
Match: A0A6J1BY38 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Momordica charantia OX=3673 GN=LOC111006640 PE=4 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 7.0e-123
Identity = 233/255 (91.37%), Postives = 239/255 (93.73%), Query Frame = 0


Query: 1   MARKGKRTNNPNSDSDDDETFYYRYPSAASSAPPPLS--SSQSHSHSSTKFGGGSGGLVP 60
           MARKGKRT NPNSDSDDDETFYYRYPSAASSAPPP S  SSQ+HSHSS K GGGSGGLVP
Sbjct: 1   MARKGKRT-NPNSDSDDDETFYYRYPSAASSAPPPSSSQSSQAHSHSSIKSGGGSGGLVP 60

Query: 61  SKSTVYASNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDDAVKA 120
           SKSTVY SN DYSLTNSDLHTLFSTFGKIARVTVLKDRQTR+SRGVAFIQFISQDDAVKA
Sbjct: 61  SKSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQDDAVKA 120

Query: 121 AKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLG 180
            K+M+GKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECP+NQLG
Sbjct: 121 CKEMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPRNQLG 180

Query: 181 PRERPEPKRVRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTAGENVVEKKK 240
           PRERPEPKR RRGG GARHEEDWGSD GEGFEDDNWASVVDGDADQRLLT GENV E+KK
Sbjct: 181 PRERPEPKRGRRGGVGARHEEDWGSDGGEGFEDDNWASVVDGDADQRLLTGGENVAERKK 240

Query: 241 AKKASYFSDESGEDE 254
            KKASYFSDES EDE
Sbjct: 241 GKKASYFSDESDEDE 254

[Close]

BLAST of Lag0029771 vs. TAIR 10
Match: AT3G10400.1 (RNA recognition motif and CCHC-type zinc finger domains containing protein )

HSP 1 Score: 269.2 bits (687), Expect = 3.3e-72
Identity = 150/261 (57.47%), Postives = 183/261 (70.11%), Query Frame = 0


Query: 6   KRTNNPNSDSDDDETFYYRYPSAASSAPPPLSSSQSHSHSSTKFGGGSGGLVPSKSTVYA 65
           K+    +SD ++D+TFYYRY S A+  P       S S  S+  GGGSGGL PSKST+Y 
Sbjct: 2   KKRKIHHSDDEEDDTFYYRYSSVAAPPPSNPKHQPSSSAKSSAPGGGSGGLAPSKSTLYV 61

Query: 66  SNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDDAVKAAKQMHGK 125
           SN D+SLTNSD+HTLFSTFGK+ARVTVLKDR TR+SRGVAF+ ++S++DA KAA+ M  K
Sbjct: 62  SNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMDAK 121

Query: 126 ILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEP 185
           ILNGR L  +IA DNGRA+EFI+KRVYKDKSRCYECG  +GHLSYECPKNQLGPRERP P
Sbjct: 122 ILNGRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGD-EGHLSYECPKNQLGPRERPPP 181

Query: 186 KRV---RRGGAGARHEEDWGSD------VGEGFEDDNWASVVDGDADQRLLTAGENVVE- 245
            +    R+   G   E  W +         E FE++NWASVVD +A +RL        E 
Sbjct: 182 PKKRGRRKEEEGEAEEISWSAAAPSLAVAEEEFEEENWASVVDNEAGERLRKREAEEEEE 241

Query: 246 ---KKKAKKASYFSDESGEDE 254
              K+K KK SYFSDES +++
Sbjct: 242 RRMKRKEKKVSYFSDESDDED 261

[Close]

BLAST of Lag0029771 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 65.1 bits (157), Expect = 9.4e-11
Identity = 32/90 (35.56%), Postives = 50/90 (55.56%), Query Frame = 0


Query: 54  GGLVPSKSTVYASNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQD 113
           G L    S ++     +   +S L   F++FG++   TV+ DR+T +SRG  F+ F  +D
Sbjct: 28  GSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87

Query: 114 DAVKAAKQMHGKILNGRVLKAAIATDNGRA 144
            A  A K+M GK LNGR ++  +AT+   A
Sbjct: 88  SANNAIKEMDGKELNGRQIRVNLATERSSA 117

[Close]

BLAST of Lag0029771 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 65.1 bits (157), Expect = 9.4e-11
Identity = 32/90 (35.56%), Postives = 50/90 (55.56%), Query Frame = 0


Query: 54  GGLVPSKSTVYASNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQD 113
           G L    S ++     +   +S L   F++FG++   TV+ DR+T +SRG  F+ F  +D
Sbjct: 28  GSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87

Query: 114 DAVKAAKQMHGKILNGRVLKAAIATDNGRA 144
            A  A K+M GK LNGR ++  +AT+   A
Sbjct: 88  SANNAIKEMDGKELNGRQIRVNLATERSSA 117

[Close]

BLAST of Lag0029771 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-09
Identity = 32/94 (34.04%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 63  VYASNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDDAVKAAKQM 122
           ++ S      T+  L  LFS FG+I    +++D +T++ +G  FI F S+DDA KA K +
Sbjct: 9   LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68

Query: 123 HGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKS 157
            GKI++GR++   +A    + AE +R  +  +K+
Sbjct: 69  DGKIVDGRLIFVEVA----KNAEEVRAGINSNKA 98

[Close]

BLAST of Lag0029771 vs. TAIR 10
Match: AT4G20030.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 57.4 bits (137), Expect = 2.0e-08
Identity = 43/119 (36.13%), Postives = 63/119 (52.94%), Query Frame = 0


Query: 27  SAASSAPPPLSSSQS-HSHSSTKFGGGSGGL--VPSKSTVYASNFDYSLTNSDLHTLFST 86
           SA  S P  ++SS S  ++ + +F      L   P  S +   N  +S +   L   FS 
Sbjct: 3   SATLSFPSFVASSSSLPNYRNLRFPKIKASLFNYPLASKIMVRNLPFSTSEDFLKREFSA 62

Query: 87  FGKIARVTVLKDRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGR 143
           FG+IA V ++KD   ++S+G AFIQF SQDDA  A + M  ++ NGR++   IA    R
Sbjct: 63  FGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIAKPGKR 121

The following BLAST results are available for this feature:

BLAST of Lag0029771 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883985.1	7.9e-129	93.44	U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Benincasa hispida]	[more]
XP_008456528.1	3.3e-127	92.66	PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo]...	[more]
XP_022993724.1	2.0e-124	89.96	U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita maxima] >XP_02...	[more]
KAG7016330.1	3.5e-124	89.96	U11/U12 small nuclear ribonucleoprotein 31 kDa protein, partial [Cucurbita argyr...	[more]
XP_022939952.1	3.5e-124	89.96	U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita moschata] >XP_...	[more]

BLAST of Lag0029771 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAE4	4.6e-71	57.47	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Arabidopsis thaliana O...	[more]
Q5SP50	1.7e-41	46.48	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Danio rerio ...	[more]
Q499V6	1.7e-41	46.70	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Rattus norve...	[more]
Q8TBF4	2.9e-41	46.26	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Homo sapiens...	[more]
Q9CZ96	6.5e-41	46.23	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Mus musculus...	[more]

BLAST of Lag0029771 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SYZ1	1.6e-127	92.66	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo var. maku...	[more]
A0A1S3C324	1.6e-127	92.66	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo OX=3656 G...	[more]
A0A6J1JX53	9.8e-125	89.96	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita maxima OX=36...	[more]
A0A6J1FIA0	1.7e-124	89.96	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita moschata OX=...	[more]
A0A6J1BY38	7.0e-123	91.37	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Momordica charantia OX...	[more]

BLAST of Lag0029771 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10400.1	3.3e-72	57.47	RNA recognition motif and CCHC-type zinc finger domains containing protein	[more]
AT3G23830.1	9.4e-11	35.56	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	9.4e-11	35.56	glycine-rich RNA-binding protein 4	[more]
AT3G46020.1	2.3e-09	34.04	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G20030.1	2.0e-08	36.13	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 62..135 e-value: 4.7E-4 score: 29.5
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 62..135 e-value: 9.2E-23 score: 91.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 63..133 e-value: 2.2E-19 score: 69.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 61..139 score: 18.154507
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 5..136 e-value: 4.2E-25 score: 90.4
None	No IPR available	GENE3D	4.10.60.10		coord: 148..186 e-value: 4.3E-5 score: 25.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 177..203
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..208
None	No IPR available	PANTHER	PTHR46259:SF1	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	coord: 12..252
IPR044598	Zinc finger CCHC-type and RNA-binding motif-containing protein 1	PANTHER	PTHR46259	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	coord: 12..252
IPR034219	ZCRB1, RNA recognition motif	CDD	cd12393	RRM_ZCRB1	coord: 60..137 e-value: 3.90159E-40 score: 131.669
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 51..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0029771.1	Lag0029771.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032502	developmental process
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0051302	regulation of cell division
cellular_component	GO:0005689	U12-type spliceosomal complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding