Lag0029526 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0029526
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr8: 39824737 .. 39825096 (-)
RNA-Seq ExpressionLag0029526
SyntenyLag0029526
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTATCAAACCAAAACTTTGCAGAGACCAAACTCTCAACTTTCACTCTTCCAACAATAATCTTAAAATCAATTCTGTTTCTGTCTTTGAACACTCTCACAATCCTTGTGTTGTTTGCAGGCACAGGCAGTGCAGTGGGGACTGTGATCATTCATGGCCTTCCCTCCTCTGCCATTGATGCCTTTGTCATCTCCATTGCCTTTGCCTTTTCAGGTGCTTTGAGTGCTCTTTTGGTCCCTCAAAGGCACAACTTAGCTACCTTCTGCGCCTTGTATTCTGTGGCTTCCATGGCTTCTGCTCTGCTTCTGCTGCTTTGGGGATTGTATCACACAATCAGTCTTGCCAAAGCCCACTAG

mRNA sequence

ATGAAATTATCAAACCAAAACTTTGCAGAGACCAAACTCTCAACTTTCACTCTTCCAACAATAATCTTAAAATCAATTCTGTTTCTGTCTTTGAACACTCTCACAATCCTTGTGTTGTTTGCAGGCACAGGCAGTGCAGTGGGGACTGTGATCATTCATGGCCTTCCCTCCTCTGCCATTGATGCCTTTGTCATCTCCATTGCCTTTGCCTTTTCAGGTGCTTTGAGTGCTCTTTTGGTCCCTCAAAGGCACAACTTAGCTACCTTCTGCGCCTTGTATTCTGTGGCTTCCATGGCTTCTGCTCTGCTTCTGCTGCTTTGGGGATTGTATCACACAATCAGTCTTGCCAAAGCCCACTAG

Coding sequence (CDS)

ATGAAATTATCAAACCAAAACTTTGCAGAGACCAAACTCTCAACTTTCACTCTTCCAACAATAATCTTAAAATCAATTCTGTTTCTGTCTTTGAACACTCTCACAATCCTTGTGTTGTTTGCAGGCACAGGCAGTGCAGTGGGGACTGTGATCATTCATGGCCTTCCCTCCTCTGCCATTGATGCCTTTGTCATCTCCATTGCCTTTGCCTTTTCAGGTGCTTTGAGTGCTCTTTTGGTCCCTCAAAGGCACAACTTAGCTACCTTCTGCGCCTTGTATTCTGTGGCTTCCATGGCTTCTGCTCTGCTTCTGCTGCTTTGGGGATTGTATCACACAATCAGTCTTGCCAAAGCCCACTAG

Protein sequence

MKLSNQNFAETKLSTFTLPTIILKSILFLSLNTLTILVLFAGTGSAVGTVIIHGLPSSAIDAFVISIAFAFSGALSALLVPQRHNLATFCALYSVASMASALLLLLWGLYHTISLAKAH
Homology
BLAST of Lag0029526 vs. NCBI nr
Match: KGN49809.1 (hypothetical protein Csa_004648 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 1.8e-35
Identity = 97/119 (81.51%), Postives = 104/119 (87.39%), Query Frame = 0

Query: 1   MKLSNQNFAETKLST-FTLPTIILKSILFLSLNTLTILVLFAGTGSAVGTVIIHGLPSSA 60
           MKLSNQ  A  KL T FTLPTIILKSILFLSLN+LTIL+LFA  GSAVGTVI HG PSSA
Sbjct: 12  MKLSNQ-IAMAKLPTSFTLPTIILKSILFLSLNSLTILLLFA--GSAVGTVIFHGFPSSA 71

Query: 61  IDAFVISIAFAFSGALSALLVPQRHNLATFCALYSVASMASALLLLLWGLYHTISLAKA 119
           IDAF+ISI FAFSGALSALLVPQRH LA FCALYS+AS+ASALLLL+WGLYHT+ L KA
Sbjct: 72  IDAFIISIVFAFSGALSALLVPQRHKLARFCALYSLASLASALLLLIWGLYHTLILGKA 127

BLAST of Lag0029526 vs. NCBI nr
Match: KAG6579131.1 (hypothetical protein SDJN03_23579, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 158.3 bits (399), Expect = 4.1e-35
Identity = 95/118 (80.51%), Postives = 103/118 (87.29%), Query Frame = 0

Query: 1   MKLSNQNFAETKLSTFTLPTIILKSILFLSLNTLTILVLFAGTGSAVGTVIIHGLPSSAI 60
           M+LS+Q FA TKLSTFT PT+IL+SILFLS N+LTILVLFA  GSA G VI H LPSS I
Sbjct: 1   MRLSDQ-FAVTKLSTFTPPTVILQSILFLSWNSLTILVLFA--GSAAGNVIFHDLPSSTI 60

Query: 61  DAFVISIAFAFSGALSALLVPQRHNLATFCALYSVASMASALLLLLWGLYHTISLAKA 119
           DAFVISI FAFSGALSALLVPQRHNLATFCALYS+ASMASALLLL+WGLYH+  L KA
Sbjct: 61  DAFVISIFFAFSGALSALLVPQRHNLATFCALYSLASMASALLLLIWGLYHSFVLGKA 115

BLAST of Lag0029526 vs. NCBI nr
Match: KAA0050243.1 (hypothetical protein E6C27_scaffold355G00870 [Cucumis melo var. makuwa] >TYJ98163.1 hypothetical protein E5676_scaffold180G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 5.6e-24
Identity = 64/76 (84.21%), Postives = 69/76 (90.79%), Query Frame = 0

Query: 44  GSAVGTVIIHGLPSSAIDAFVISIAFAFSGALSALLVPQRHNLATFCALYSVASMASALL 103
           GSAVGTV+ HGL SSAIDAFVISI FAFSGALSALLVPQRHNLA FCA+YS+ SMASALL
Sbjct: 4   GSAVGTVMFHGLSSSAIDAFVISIVFAFSGALSALLVPQRHNLAKFCAVYSLVSMASALL 63

Query: 104 LLLWGLYHTISLAKAH 120
           LL+WGLYHT+ L KAH
Sbjct: 64  LLIWGLYHTLILGKAH 79

BLAST of Lag0029526 vs. NCBI nr
Match: KAG6601931.1 (hypothetical protein SDJN03_07164, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-17
Identity = 64/97 (65.98%), Postives = 77/97 (79.38%), Query Frame = 0

Query: 20  TIILKSILFLSLNTLTILVLFAG--TGSAVGTVIIHGL--PSSAIDAFVISIAFAFSGAL 79
           TI+LK IL+LSLNTL+IL++ +G   G  VG +I  GL  PSSA DAFV+SI FAF GAL
Sbjct: 17  TILLKPILYLSLNTLSILLILSGRSEGGGVG-LIFDGLSNPSSAFDAFVLSITFAFLGAL 76

Query: 80  SALLVPQRHNLATFCALYSVASMASALLLLLWGLYHT 113
            ALL+P + NLATF  LYSVASMASALLLL+WGLY++
Sbjct: 77  GALLIPHKPNLATFYTLYSVASMASALLLLIWGLYYS 112

BLAST of Lag0029526 vs. NCBI nr
Match: KGN49807.1 (hypothetical protein Csa_004664 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 3.0e-09
Identity = 49/97 (50.52%), Postives = 64/97 (65.98%), Query Frame = 0

Query: 20  TIILKSILFLSLNTLTILVLFAGTGSAVGTVIIH---GLPSSAIDAFVISIAFAFSGALS 79
           T +L SILF+S NTLTIL+  +     + +++I      PS A DAFV+SI F+FS AL 
Sbjct: 16  TTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFDAFVLSITFSFSTALG 75

Query: 80  ALLVPQRHNLATFCALYSVASMASALLLLLWGLYHTI 114
           ALL+P +  LA + A YSVA MA AL LL+ GLY+ I
Sbjct: 76  ALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYYFI 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN49809.11.8e-3581.51hypothetical protein Csa_004648 [Cucumis sativus][more]
KAG6579131.14.1e-3580.51hypothetical protein SDJN03_23579, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0050243.15.6e-2484.21hypothetical protein E6C27_scaffold355G00870 [Cucumis melo var. makuwa] >TYJ9816... [more]
KAG6601931.11.0e-1765.98hypothetical protein SDJN03_07164, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN49807.13.0e-0950.52hypothetical protein Csa_004664 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0029526.1Lag0029526.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane