Lag0029511 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0029511
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr8: 39641183 .. 39642602 (-)
RNA-Seq Expression	Lag0029511
Synteny	Lag0029511

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATTCACTCTCACAGAAGCAATGCACGAAGAATAGAGAAGAAGAAGAACAGAATGCACCAGATGTAAGTGGTTCGGCAACGAGGCCTACGTCCACTGGAAGGGAGGTATTTGTATTTGCACAGTATTACAGAGATTACAAACTCTCACCGATTTCTCTTATATTTTCAGAATACAAGATGATGATCTATTTATAGGTTTCGAAGTAATGGACTCTAAAGCAGAGGCTGAGGATCAGGTTGGTTTCAACCGTTTTATCAGGTAATTCTCCTTACACAAACCACGAAAGAAACTCTATTCTCTACTCTCTCCCCTCTGGCTCTATTGCTCTCCCTTCTACGGTGATTTACCGTTGGTGGCATCAGGTGAGTTCCTCCTATCCAGATTTTACTCATCAACAGAGGGAGTAGTTAGGTGGTGGGTGTTTGGTTGCTGCATTTAGTGTTGTTTCAAGCAATCCGCTCTAGAAGCAATTCATCCAAGCTAAATACAAGGTCACTCATGTTGGTGGTATTCCTTTGGTCTCAAAGTTCTCTAGCTCTTGGGCGCCATGGGTTGCCATCTGCCAACTCAAGGATTTTTTCAGCCGTTTCTCTTAGTGGGAACTTCACAGTGGCAACCAAATAATTTTTTTTCTGGTATGAAAAATGGCTGGATACAGGTCCTTTATTCCAGACAATGCCTAGATATTTTGCTCTGACTGACCGACCCCAAATTTCTGTCAAGGAAGCTTGGTCTGAAGTTTCTCGTAGCTGGAATTTCTTCCCTAAACGTGCTCTTTTTGATTGAGATATTCAAGCCTGGGAGGAGGTGGCTGCCACCTTCCCATGCCCGTCTTCTCATGAGAGGTCGGACTATTATAGATGGATTGGCTCCACAGATGGGGTCTTTAATACCGCTTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGTGCTTTATGGCGGCCTTCGGACAGCACGCATGGGGCACAGGCTTTCCCGGAGTCGGTGCTGAAAAATCTATGGAAAGCATCCTTCCCTAGAAAATGCAAATTTTTCCTCTGGACTCTTCTTCACAGGAGACTTAATACGGCTGACCTCCTTCAAAGAAAGCTCAAACCTTCGGCTTTAAATCCCAGCAGATGTGTTCTTTGCAAAGCCCAATCAGAGTCGTTAGATCATATTTTCCTTCATTGTCACTTCTCAGCTGTTATTTGGAACAAGCTTTTCAGTGTTAAGGGTCTCCTCTTCTCTCGTCCTCAACAGATTCGGTCCTTGTGCTTGGAATTTCTTGCCATTAAACCGACATCTCATATTTTCCTTCATTGCCATTTTGACTGCAAGCTGGATATGGGAGGATGA

mRNA sequence

ATGGCGATTCACTCTCACAGAAGCAATGCACGAAGAATAGAGAAGAAGAAGAACAGAATGCACCAGATAATACAAGATGATGATCTATTTATAGGTTTCGAAGTAATGGACTCTAAAGCAGAGGCTGAGGATCAGGTTGGTTTCAACCGTTTTATCAGGAAGCTTGGTCTGAAGTTTCTCGTAGCTGGAATTTCTTCCCTAAACGTGCTCTTTTTGATTGAGATATTCAAGCCTGGGAGGAGGTGGCTGCCACCTTCCCATGCCCGTCTTCTCATGAGAGGTCGGACTATTATAGATGGATTGGCTCCACAGATGGGGTCTTTAATACCGCTTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGTGCTTTATGGCGGCCTTCGGACAGCACGCATGGGGCACAGGCTTTCCCGGAGTCGGTGCTGAAAAATCTATGGAAAGCATCCTTCCCTAGAAAATGCAAATTTTTCCTCTGGACTCTTCTTCACAGGAGACTTAATACGGCTGACCTCCTTCAAAGAAAGCTCAAACCTTCGGCTTTAAATCCCAGCAGATGTGTTCTTTGCAAAGCCCAATCAGAGTCGTTAGATCATATTTTCCTTCATTGTCACTTCTCAGCTGTTATTTGGAACAAGCTTTTCAGTGTTAAGGGTCTCCTCTTCTCTCGTCCTCAACAGATTCGGTCCTTGTGCTTGGAATTTCTTGCCATTAAACCGACATCTCATATTTTCCTTCATTGCCATTTTGACTGCAAGCTGGATATGGGAGGATGA

Coding sequence (CDS)

ATGGCGATTCACTCTCACAGAAGCAATGCACGAAGAATAGAGAAGAAGAAGAACAGAATGCACCAGATAATACAAGATGATGATCTATTTATAGGTTTCGAAGTAATGGACTCTAAAGCAGAGGCTGAGGATCAGGTTGGTTTCAACCGTTTTATCAGGAAGCTTGGTCTGAAGTTTCTCGTAGCTGGAATTTCTTCCCTAAACGTGCTCTTTTTGATTGAGATATTCAAGCCTGGGAGGAGGTGGCTGCCACCTTCCCATGCCCGTCTTCTCATGAGAGGTCGGACTATTATAGATGGATTGGCTCCACAGATGGGGTCTTTAATACCGCTTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGTGCTTTATGGCGGCCTTCGGACAGCACGCATGGGGCACAGGCTTTCCCGGAGTCGGTGCTGAAAAATCTATGGAAAGCATCCTTCCCTAGAAAATGCAAATTTTTCCTCTGGACTCTTCTTCACAGGAGACTTAATACGGCTGACCTCCTTCAAAGAAAGCTCAAACCTTCGGCTTTAAATCCCAGCAGATGTGTTCTTTGCAAAGCCCAATCAGAGTCGTTAGATCATATTTTCCTTCATTGTCACTTCTCAGCTGTTATTTGGAACAAGCTTTTCAGTGTTAAGGGTCTCCTCTTCTCTCGTCCTCAACAGATTCGGTCCTTGTGCTTGGAATTTCTTGCCATTAAACCGACATCTCATATTTTCCTTCATTGCCATTTTGACTGCAAGCTGGATATGGGAGGATGA

Protein sequence

MAIHSHRSNARRIEKKKNRMHQIIQDDDLFIGFEVMDSKAEAEDQVGFNRFIRKLGLKFLVAGISSLNVLFLIEIFKPGRRWLPPSHARLLMRGRTIIDGLAPQMGSLIPLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRALWRPSDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLLFSRPQQIRSLCLEFLAIKPTSHIFLHCHFDCKLDMGG

Homology

[Close]

BLAST of Lag0029511 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 1.0e-15
Identity = 43/105 (40.95%), Postives = 66/105 (62.86%), Query Frame = 0


Query: 153 SDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCV 212
           S+++     F  S+ K LWK  FP+KCKFF+WTL+H  +NTAD LQ++L    L+P+ C 
Sbjct: 760 SEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCY 819

Query: 213 LCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQQIRSL 256
           +C    E ++H+F+HC +S  +W+K    + LL   S P  ++SL
Sbjct: 820 MCNKSQEDINHLFIHCPYSQQLWSK---AQALLKWNSTPNDVKSL 861

[Close]

BLAST of Lag0029511 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 1.0e-15
Identity = 43/105 (40.95%), Postives = 66/105 (62.86%), Query Frame = 0


Query: 153 SDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCV 212
           S+++     F  S+ K LWK  FP+KCKFF+WTL+H  +NTAD LQ++L    L+P+ C 
Sbjct: 854 SEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCY 913

Query: 213 LCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQQIRSL 256
           +C    E ++H+F+HC +S  +W+K    + LL   S P  ++SL
Sbjct: 914 MCNKSQEDINHLFIHCPYSQQLWSK---AQALLKWNSTPNDVKSL 955

[Close]

BLAST of Lag0029511 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 2.9e-15
Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 162  FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESL 221
            F  ++ K LWK  FP+KCKFF+WTL+H  +NTAD LQ++L    L+P+ C +C    E +
Sbjct: 971  FHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDI 1030

Query: 222  DHIFLHCHFSAVIWNKLFSVKGLL--FSRPQQIRSL 256
            +H+F+HC +S  +W+K    K LL   S P  ++SL
Sbjct: 1031 NHLFIHCPYSQQLWSK---AKALLNWNSTPTDVQSL 1063

[Close]

BLAST of Lag0029511 vs. NCBI nr
Match: KAA0044451.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 3.8e-15
Identity = 36/76 (47.37%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 162 FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESL 221
           F  ++ K LWK  FP+KCKFF+WTL+H  +NTAD LQ++L   AL+P+ C +C    E +
Sbjct: 314 FHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDI 373

Query: 222 DHIFLHCHFSAVIWNK 238
           +H+F+HC +S  +W+K
Sbjct: 374 NHLFIHCPYSQQLWSK 389

[Close]

BLAST of Lag0029511 vs. NCBI nr
Match: TYK29578.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 3.8e-15
Identity = 36/76 (47.37%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 162 FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESL 221
           F  ++ K LWK  FP+KCKFF+WTL+H  +NTAD LQ++L   AL+P+ C +C    E +
Sbjct: 271 FHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDI 330

Query: 222 DHIFLHCHFSAVIWNK 238
           +H+F+HC +S  +W+K
Sbjct: 331 NHLFIHCPYSQQLWSK 346

[Close]

BLAST of Lag0029511 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.9e-16
Identity = 43/105 (40.95%), Postives = 66/105 (62.86%), Query Frame = 0


Query: 153 SDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCV 212
           S+++     F  S+ K LWK  FP+KCKFF+WTL+H  +NTAD LQ++L    L+P+ C 
Sbjct: 854 SEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCY 913

Query: 213 LCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQQIRSL 256
           +C    E ++H+F+HC +S  +W+K    + LL   S P  ++SL
Sbjct: 914 MCNKSQEDINHLFIHCPYSQQLWSK---AQALLKWNSTPNDVKSL 955

[Close]

BLAST of Lag0029511 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.9e-16
Identity = 43/105 (40.95%), Postives = 66/105 (62.86%), Query Frame = 0


Query: 153 SDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCV 212
           S+++     F  S+ K LWK  FP+KCKFF+WTL+H  +NTAD LQ++L    L+P+ C 
Sbjct: 760 SEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCY 819

Query: 213 LCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQQIRSL 256
           +C    E ++H+F+HC +S  +W+K    + LL   S P  ++SL
Sbjct: 820 MCNKSQEDINHLFIHCPYSQQLWSK---AQALLKWNSTPNDVKSL 861

[Close]

BLAST of Lag0029511 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-15
Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 162  FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESL 221
            F  ++ K LWK  FP+KCKFF+WTL+H  +NTAD LQ++L    L+P+ C +C    E +
Sbjct: 971  FHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDI 1030

Query: 222  DHIFLHCHFSAVIWNKLFSVKGLL--FSRPQQIRSL 256
            +H+F+HC +S  +W+K    K LL   S P  ++SL
Sbjct: 1031 NHLFIHCPYSQQLWSK---AKALLNWNSTPTDVQSL 1063

[Close]

BLAST of Lag0029511 vs. ExPASy TrEMBL
Match: A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.9e-15
Identity = 36/76 (47.37%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 162 FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESL 221
           F  ++ K LWK  FP+KCKFF+WTL+H  +NTAD LQ++L   AL+P+ C +C    E +
Sbjct: 314 FHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDI 373

Query: 222 DHIFLHCHFSAVIWNK 238
           +H+F+HC +S  +W+K
Sbjct: 374 NHLFIHCPYSQQLWSK 389

[Close]

BLAST of Lag0029511 vs. ExPASy TrEMBL
Match: A0A5D3E1E3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001840 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.9e-15
Identity = 36/76 (47.37%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 162 FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESL 221
           F  ++ K LWK  FP+KCKFF+WTL+H  +NTAD LQ++L   AL+P+ C +C    E +
Sbjct: 271 FHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDI 330

Query: 222 DHIFLHCHFSAVIWNK 238
           +H+F+HC +S  +W+K
Sbjct: 331 NHLFIHCPYSQQLWSK 346

The following BLAST results are available for this feature:

BLAST of Lag0029511 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044556.1	1.0e-15	40.95	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0041397.1	1.0e-15	40.95	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0039950.1	2.9e-15	43.75	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245...	[more]
KAA0044451.1	3.8e-15	47.37	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK29578.1	3.8e-15	47.37	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0029511 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0029511 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TIB8	4.9e-16	40.95	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TR15	4.9e-16	40.95	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7T9I7	1.4e-15	43.75	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TSA7	1.9e-15	47.37	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3E1E3	1.9e-15	47.37	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Lag0029511 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 132..201 e-value: 3.4E-17 score: 62.9
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 114..219
None	No IPR available	PANTHER	PTHR33116:SF38	OS01G0158850 PROTEIN	coord: 114..219

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0029511.1	Lag0029511.1	mRNA