Lag0028850 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0028850
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionPentatricopeptide repeat-containing protein
Locationchr8: 31817202 .. 31817795 (-)
RNA-Seq ExpressionLag0028850
SyntenyLag0028850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGGAGGGATAGAACGGTCTAAGTTCTCTTTTGTGGGTGTTTTGTCTTGTTTTTCACGTGAAGATGACTTGAAATTTGGGCAACAGTTACATGGTCTTGTGATTAAAATTGGGTTTTATTATGAAGTTTTGGTTGTAAATTGTTTGATGAACATGTATTTACAATGCGGAGGCTTTTTCTTAGCTGAGAAACTGTTTGAAGAGGTGCCTGTACGAGATGTTGTGACATATAATTCAATTATTGGCTCAGGGGCAAAAGTCAATAGACCTGAAATAGCATTAGAACTCTTTTATAGTATGGCAGCAAATGGACTTATTCCTACACAGGCATCATTTGTAAATGCTGTCAACTCTTGTAGTTGTCTGGGAAGTTCAATTTATGGACAATATTTTCACTCAAAAACAATTCGTTATGCTTTGGAGTCTGATGTATTTGTGGGTACTGCTCTGATTGACTTTTACGCCAAGTTCAAAATGTTGGAGGAAGCCCGTTATTGCTTTGATGAGATCGCTGAGAAGAATTTGGTTTCTTGGAACGCTTTGATTTGGGTTACTCGACTGATTGCTACACTTCCTCTATGTATTTACTGA

mRNA sequence

ATGTGTGGAGGGATAGAACGGTCTAAGTTCTCTTTTGTGGGTGTTTTGTCTTGTTTTTCACGTGAAGATGACTTGAAATTTGGGCAACAGTTACATGGTCTTGTGATTAAAATTGGGTTTTATTATGAAGTTTTGGTTGTAAATTGTTTGATGAACATGTATTTACAATGCGGAGGCTTTTTCTTAGCTGAGAAACTGTTTGAAGAGGTGCCTGTACGAGATGTTGTGACATATAATTCAATTATTGGCTCAGGGGCAAAAGTCAATAGACCTGAAATAGCATTAGAACTCTTTTATAGTATGGCAGCAAATGGACTTATTCCTACACAGGCATCATTTGTAAATGCTGTCAACTCTTGTAGTTGTCTGGGAAGTTCAATTTATGGACAATATTTTCACTCAAAAACAATTCGTTATGCTTTGGAGTCTGATGTATTTGTGGGTACTGCTCTGATTGACTTTTACGCCAAGTTCAAAATGTTGGAGGAAGCCCGTTATTGCTTTGATGAGATCGCTGAGAAGAATTTGGTTTCTTGGAACGCTTTGATTTGGGTTACTCGACTGATTGCTACACTTCCTCTATGTATTTACTGA

Coding sequence (CDS)

ATGTGTGGAGGGATAGAACGGTCTAAGTTCTCTTTTGTGGGTGTTTTGTCTTGTTTTTCACGTGAAGATGACTTGAAATTTGGGCAACAGTTACATGGTCTTGTGATTAAAATTGGGTTTTATTATGAAGTTTTGGTTGTAAATTGTTTGATGAACATGTATTTACAATGCGGAGGCTTTTTCTTAGCTGAGAAACTGTTTGAAGAGGTGCCTGTACGAGATGTTGTGACATATAATTCAATTATTGGCTCAGGGGCAAAAGTCAATAGACCTGAAATAGCATTAGAACTCTTTTATAGTATGGCAGCAAATGGACTTATTCCTACACAGGCATCATTTGTAAATGCTGTCAACTCTTGTAGTTGTCTGGGAAGTTCAATTTATGGACAATATTTTCACTCAAAAACAATTCGTTATGCTTTGGAGTCTGATGTATTTGTGGGTACTGCTCTGATTGACTTTTACGCCAAGTTCAAAATGTTGGAGGAAGCCCGTTATTGCTTTGATGAGATCGCTGAGAAGAATTTGGTTTCTTGGAACGCTTTGATTTGGGTTACTCGACTGATTGCTACACTTCCTCTATGTATTTACTGA

Protein sequence

MCGGIERSKFSFVGVLSCFSREDDLKFGQQLHGLVIKIGFYYEVLVVNCLMNMYLQCGGFFLAEKLFEEVPVRDVVTYNSIIGSGAKVNRPEIALELFYSMAANGLIPTQASFVNAVNSCSCLGSSIYGQYFHSKTIRYALESDVFVGTALIDFYAKFKMLEEARYCFDEIAEKNLVSWNALIWVTRLIATLPLCIY
Homology
BLAST of Lag0028850 vs. NCBI nr
Match: XP_008456417.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Cucumis melo] >XP_008456419.1 PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Cucumis melo] >XP_008456420.1 PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Cucumis melo] >KAA0054448.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK14591.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 335.5 bits (859), Expect = 3.1e-88
Identity = 163/183 (89.07%), Postives = 172/183 (93.99%), Query Frame = 0

Query: 1   MCGGIERSKFSFVGVLSCFSREDDLKFGQQLHGLVIKIGFYYEVLVVNCLMNMYLQCGGF 60
           MC G+E SKFSFVGVLSCFSRE+DLKFGQ LHG+VIKIGFYYEVLVVN L+NMYLQCGGF
Sbjct: 202 MCEGMELSKFSFVGVLSCFSREEDLKFGQLLHGIVIKIGFYYEVLVVNSLLNMYLQCGGF 261

Query: 61  FLAEKLFEEVPVRDVVTYNSIIGSGAKVNRPEIALELFYSMAANGLIPTQASFVNAVNSC 120
           F A+KLFEEVPVRDVVTYNSII  G KVNRPEIALELFYSMAANGL PTQASFVNAVNSC
Sbjct: 262 FFADKLFEEVPVRDVVTYNSIIAVGTKVNRPEIALELFYSMAANGLTPTQASFVNAVNSC 321

Query: 121 SCLGSSIYGQYFHSKTIRYALESDVFVGTALIDFYAKFKMLEEARYCFDEIAEKNLVSWN 180
           SCLGSSIYG+YFHSKT+RYALESDVFVGTALIDFYAKFK LEEA +CFDEIAEKN+VSWN
Sbjct: 322 SCLGSSIYGEYFHSKTVRYALESDVFVGTALIDFYAKFKKLEEAHHCFDEIAEKNVVSWN 381

Query: 181 ALI 184
           ALI
Sbjct: 382 ALI 384

BLAST of Lag0028850 vs. NCBI nr
Match: XP_038902940.1 (pentatricopeptide repeat-containing protein At3g58590 [Benincasa hispida])

HSP 1 Score: 333.2 bits (853), Expect = 1.5e-87
Identity = 163/183 (89.07%), Postives = 172/183 (93.99%), Query Frame = 0

Query: 1   MCGGIERSKFSFVGVLSCFSREDDLKFGQQLHGLVIKIGFYYEVLVVNCLMNMYLQCGGF 60
           MCGGIE SKFSFVGVLSCFSRE+DLKFGQ LHG+VIKIGFYYEV VVN L+NMYLQCGGF
Sbjct: 206 MCGGIELSKFSFVGVLSCFSREEDLKFGQLLHGIVIKIGFYYEVFVVNSLVNMYLQCGGF 265

Query: 61  FLAEKLFEEVPVRDVVTYNSIIGSGAKVNRPEIALELFYSMAANGLIPTQASFVNAVNSC 120
           FLA+KLFEEVPVRDVVTYNSIIG GAKVNRPEIALELFY+M +NGLIPTQASFVNAVNSC
Sbjct: 266 FLADKLFEEVPVRDVVTYNSIIGVGAKVNRPEIALELFYTMVSNGLIPTQASFVNAVNSC 325

Query: 121 SCLGSSIYGQYFHSKTIRYALESDVFVGTALIDFYAKFKMLEEARYCFDEIAEKNLVSWN 180
           SCL SSIYG+YFHSK I YALESDVFVGTALIDFYA F+ LEEAR+CFDEIAEKNLVSWN
Sbjct: 326 SCLESSIYGEYFHSKAICYALESDVFVGTALIDFYATFRKLEEARHCFDEIAEKNLVSWN 385

Query: 181 ALI 184
           ALI
Sbjct: 386 ALI 388

BLAST of Lag0028850 vs. NCBI nr
Match: KAG6604761.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034890.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 310.1 bits (793), Expect = 1.4e-80
Identity = 151/183 (82.51%), Postives = 166/183 (90.71%), Query Frame = 0

Query: 1   MCGGIERSKFSFVGVLSCFSREDDLKFGQQLHGLVIKIGFYYEVLVVNCLMNMYLQCGGF 60
           M G +E SKFSFV VLSCFSR++DLKFGQQLHG+V+KIGFYYEVLVVN LMNMYLQCGGF
Sbjct: 206 MYGEMELSKFSFVSVLSCFSRKEDLKFGQQLHGIVVKIGFYYEVLVVNSLMNMYLQCGGF 265

Query: 61  FLAEKLFEEVPVRDVVTYNSIIGSGAKVNRPEIALELFYSMAANGLIPTQASFVNAVNSC 120
           +LAEKLFEEVPVRDVVTYNSII +G KV++PE+ALELFY+M   GLIPTQASFVN V+SC
Sbjct: 266 YLAEKLFEEVPVRDVVTYNSIISAGTKVDKPELALELFYNMIEKGLIPTQASFVNCVSSC 325

Query: 121 SCLGSSIYGQYFHSKTIRYALESDVFVGTALIDFYAKFKMLEEARYCFDEIAEKNLVSWN 180
           S + SSIYG+YFHSKTIR A ESDVFVGTALIDFYAKFK LEEAR+CFDEI EKNLVSWN
Sbjct: 326 SSMESSIYGEYFHSKTIRSAFESDVFVGTALIDFYAKFKKLEEARHCFDEITEKNLVSWN 385

Query: 181 ALI 184
           ALI
Sbjct: 386 ALI 388

BLAST of Lag0028850 vs. NCBI nr
Match: XP_023532810.1 (pentatricopeptide repeat-containing protein At3g58590 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 307.8 bits (787), Expect = 6.9e-80
Identity = 150/183 (81.97%), Postives = 165/183 (90.16%), Query Frame = 0

Query: 1   MCGGIERSKFSFVGVLSCFSREDDLKFGQQLHGLVIKIGFYYEVLVVNCLMNMYLQCGGF 60
           M G +E SKFSFV VLSCFSR++DLKFGQQLHG+V KIGFYY+VLVVN LMNMYLQCGGF
Sbjct: 206 MYGEMELSKFSFVSVLSCFSRKEDLKFGQQLHGIVFKIGFYYDVLVVNSLMNMYLQCGGF 265

Query: 61  FLAEKLFEEVPVRDVVTYNSIIGSGAKVNRPEIALELFYSMAANGLIPTQASFVNAVNSC 120
           +LAEKLFEEVPVRDVVTYNSII +G KV++PE+ALELFY+M   GLIPTQASFVN V+SC
Sbjct: 266 YLAEKLFEEVPVRDVVTYNSIISAGTKVDKPELALELFYNMIEKGLIPTQASFVNCVSSC 325

Query: 121 SCLGSSIYGQYFHSKTIRYALESDVFVGTALIDFYAKFKMLEEARYCFDEIAEKNLVSWN 180
           S + SSIYG+YFHSKTIR A ESDVFVGTALIDFYAKFK LEEAR+CFDEI EKNLVSWN
Sbjct: 326 SSMESSIYGEYFHSKTIRSAFESDVFVGTALIDFYAKFKKLEEARHCFDEITEKNLVSWN 385

Query: 181 ALI 184
           ALI
Sbjct: 386 ALI 388

BLAST of Lag0028850 vs. NCBI nr
Match: XP_022947134.1 (pentatricopeptide repeat-containing protein At3g58590 [Cucurbita moschata])

HSP 1 Score: 307.4 bits (786), Expect = 9.1e-80
Identity = 150/183 (81.97%), Postives = 165/183 (90.16%), Query Frame = 0

Query: 1   MCGGIERSKFSFVGVLSCFSREDDLKFGQQLHGLVIKIGFYYEVLVVNCLMNMYLQCGGF 60
           M G +E SKFSFV VLSCFSR++DLKFGQQLHG+V+KIGFYYEVLVVN LMNMYLQCGGF
Sbjct: 206 MYGEMELSKFSFVSVLSCFSRKEDLKFGQQLHGIVVKIGFYYEVLVVNSLMNMYLQCGGF 265

Query: 61  FLAEKLFEEVPVRDVVTYNSIIGSGAKVNRPEIALELFYSMAANGLIPTQASFVNAVNSC 120
           +LAEKLFEEVPV DVVTYNSII +G KV++PE+ALELFY+M   GLIPTQASFVN V+SC
Sbjct: 266 YLAEKLFEEVPVLDVVTYNSIISAGTKVDKPELALELFYNMIEKGLIPTQASFVNCVSSC 325

Query: 121 SCLGSSIYGQYFHSKTIRYALESDVFVGTALIDFYAKFKMLEEARYCFDEIAEKNLVSWN 180
           S + SSIYG+YFHSKTIR A ESDVFVGTALIDFYAKFK LEEAR+CFDEI EKNLVSWN
Sbjct: 326 SSMESSIYGEYFHSKTIRSAFESDVFVGTALIDFYAKFKKLEEARHCFDEITEKNLVSWN 385

Query: 181 ALI 184
           ALI
Sbjct: 386 ALI 388

BLAST of Lag0028850 vs. ExPASy Swiss-Prot
Match: Q0WN01 (Pentatricopeptide repeat-containing protein At3g58590 OS=Arabidopsis thaliana OX=3702 GN=At3g58590 PE=2 SV=2)

HSP 1 Score: 132.5 bits (332), Expect = 5.2e-30
Identity = 71/180 (39.44%), Postives = 106/180 (58.89%), Query Frame = 0

Query: 4   GIERSKFSFVGVLSCFSREDDLKFGQQLHGLVIKIGFYYEVLVVNCLMNMYLQCGGFFLA 63
           G   ++ SF+GVL   S   DL   +QLH    K G   E+ VVN L++ Y +CG   +A
Sbjct: 210 GASLTESSFLGVLKGVSCVKDLDISKQLHCSATKKGLDCEISVVNSLISAYGKCGNTHMA 269

Query: 64  EKLFEEVPVRDVVTYNSIIGSGAKVNRPEIALELFYSMAANGLIPTQASFVNAVNSCSCL 123
           E++F++    D+V++N+II + AK   P  AL+LF SM  +G  P Q ++V+ +   S +
Sbjct: 270 ERMFQDAGSWDIVSWNAIICATAKSENPLKALKLFVSMPEHGFSPNQGTYVSVLGVSSLV 329

Query: 124 GSSIYGQYFHSKTIRYALESDVFVGTALIDFYAKFKMLEEARYCFDEIAEKNLVSWNALI 183
                G+  H   I+   E+ + +G ALIDFYAK   LE++R CFD I +KN+V WNAL+
Sbjct: 330 QLLSCGRQIHGMLIKNGCETGIVLGNALIDFYAKCGNLEDSRLCFDYIRDKNIVCWNALL 389

BLAST of Lag0028850 vs. ExPASy Swiss-Prot
Match: Q9LFL5 (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H92 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.7e-25
Identity = 62/175 (35.43%), Postives = 98/175 (56.00%), Query Frame = 0

Query: 10  FSFVGVLSCFSREDDLKFGQQLHGLVIKIGFYYEVLVVNCLMNMYLQCGGFFLAEKLFEE 69
           ++F  V         ++ G+  H L +  GF   V V N L+ MY +C     A K+F+E
Sbjct: 128 YTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDE 187

Query: 70  VPVRDVVTYNSIIGSGAKVNRPEIALELFYSMAAN-GLIPTQASFVNAVNSCSCLGSSIY 129
           + V DVV++NSII S AK+ +P++ALE+F  M    G  P   + VN +  C+ LG+   
Sbjct: 188 MSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSL 247

Query: 130 GQYFHSKTIRYALESDVFVGTALIDFYAKFKMLEEARYCFDEIAEKNLVSWNALI 184
           G+  H   +   +  ++FVG  L+D YAK  M++EA   F  ++ K++VSWNA++
Sbjct: 248 GKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMV 302

BLAST of Lag0028850 vs. ExPASy Swiss-Prot
Match: Q3E6Q1 (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.7e-25
Identity = 61/179 (34.08%), Postives = 103/179 (57.54%), Query Frame = 0

Query: 5   IERSKFSFVGVLSCFSREDDLKFGQQLHGLVIKIGFYYEVLVVNCLMNMYLQCGGFFLAE 64
           +E   ++F  +L     E +L+ G+++HGL++K GF  ++  +  L NMY +C     A 
Sbjct: 131 VEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEAR 190

Query: 65  KLFEEVPVRDVVTYNSIIGSGAKVNRPEIALELFYSMAANGLIPTQASFVNAVNSCSCLG 124
           K+F+ +P RD+V++N+I+   ++     +ALE+  SM    L P+  + V+ + + S L 
Sbjct: 191 KVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALR 250

Query: 125 SSIYGQYFHSKTIRYALESDVFVGTALIDFYAKFKMLEEARYCFDEIAEKNLVSWNALI 184
               G+  H   +R   +S V + TAL+D YAK   LE AR  FD + E+N+VSWN++I
Sbjct: 251 LISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMI 309

BLAST of Lag0028850 vs. ExPASy Swiss-Prot
Match: Q9STE1 (Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E36 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.3e-25
Identity = 62/179 (34.64%), Postives = 104/179 (58.10%), Query Frame = 0

Query: 5   IERSKFSFVGVLSCFSREDDLKFGQQLHGLVIKIGFYYEVLVVNCLMNMYLQCGGFFLAE 64
           I  ++ + V +L        LK G++LHG +IK GF     +   +++MY +CG   LA 
Sbjct: 437 ISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAY 496

Query: 65  KLFEEVPVRDVVTYNSIIGSGAKVNRPEIALELFYSMAANGLIPTQASFVNAVNSCSCLG 124
           ++FE +  RD+V++NS+I   A+ + P  A+++F  M  +G+     S   A+++C+ L 
Sbjct: 497 EIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLP 556

Query: 125 SSIYGQYFHSKTIRYALESDVFVGTALIDFYAKFKMLEEARYCFDEIAEKNLVSWNALI 184
           S  +G+  H   I+++L SDV+  + LID YAK   L+ A   F  + EKN+VSWN++I
Sbjct: 557 SESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSII 615

BLAST of Lag0028850 vs. ExPASy Swiss-Prot
Match: Q9SVP7 (Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H42 PE=2 SV=2)

HSP 1 Score: 116.7 bits (291), Expect = 3.0e-25
Identity = 63/180 (35.00%), Postives = 99/180 (55.00%), Query Frame = 0

Query: 4   GIERSKFSFVGVLSCFSREDDLKFGQQLHGLVIKIGFYYEVLVVNCLMNMYLQCGGFFLA 63
           GI  + ++F  VLS   + + L+ G+QLHGLV+K+GF  +  V N L+++Y   G    A
Sbjct: 283 GIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISA 342

Query: 64  EKLFEEVPVRDVVTYNSIIGSGAKVNRPEIALELFYSMAANGLIPTQASFVNAVNSCSCL 123
           E +F  +  RD VTYN++I   ++    E A+ELF  M  +GL P   +  + V +CS  
Sbjct: 343 EHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSAD 402

Query: 124 GSSIYGQYFHSKTIRYALESDVFVGTALIDFYAKFKMLEEARYCFDEIAEKNLVSWNALI 183
           G+   GQ  H+ T +    S+  +  AL++ YAK   +E A   F E   +N+V WN ++
Sbjct: 403 GTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVML 462

BLAST of Lag0028850 vs. ExPASy TrEMBL
Match: A0A1S3C2S6 (pentatricopeptide repeat-containing protein At3g58590 OS=Cucumis melo OX=3656 GN=LOC103496365 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.5e-88
Identity = 163/183 (89.07%), Postives = 172/183 (93.99%), Query Frame = 0

Query: 1   MCGGIERSKFSFVGVLSCFSREDDLKFGQQLHGLVIKIGFYYEVLVVNCLMNMYLQCGGF 60
           MC G+E SKFSFVGVLSCFSRE+DLKFGQ LHG+VIKIGFYYEVLVVN L+NMYLQCGGF
Sbjct: 202 MCEGMELSKFSFVGVLSCFSREEDLKFGQLLHGIVIKIGFYYEVLVVNSLLNMYLQCGGF 261

Query: 61  FLAEKLFEEVPVRDVVTYNSIIGSGAKVNRPEIALELFYSMAANGLIPTQASFVNAVNSC 120
           F A+KLFEEVPVRDVVTYNSII  G KVNRPEIALELFYSMAANGL PTQASFVNAVNSC
Sbjct: 262 FFADKLFEEVPVRDVVTYNSIIAVGTKVNRPEIALELFYSMAANGLTPTQASFVNAVNSC 321

Query: 121 SCLGSSIYGQYFHSKTIRYALESDVFVGTALIDFYAKFKMLEEARYCFDEIAEKNLVSWN 180
           SCLGSSIYG+YFHSKT+RYALESDVFVGTALIDFYAKFK LEEA +CFDEIAEKN+VSWN
Sbjct: 322 SCLGSSIYGEYFHSKTVRYALESDVFVGTALIDFYAKFKKLEEAHHCFDEIAEKNVVSWN 381

Query: 181 ALI 184
           ALI
Sbjct: 382 ALI 384

BLAST of Lag0028850 vs. ExPASy TrEMBL
Match: A0A5A7UHJ9 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00930 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.5e-88
Identity = 163/183 (89.07%), Postives = 172/183 (93.99%), Query Frame = 0

Query: 1   MCGGIERSKFSFVGVLSCFSREDDLKFGQQLHGLVIKIGFYYEVLVVNCLMNMYLQCGGF 60
           MC G+E SKFSFVGVLSCFSRE+DLKFGQ LHG+VIKIGFYYEVLVVN L+NMYLQCGGF
Sbjct: 202 MCEGMELSKFSFVGVLSCFSREEDLKFGQLLHGIVIKIGFYYEVLVVNSLLNMYLQCGGF 261

Query: 61  FLAEKLFEEVPVRDVVTYNSIIGSGAKVNRPEIALELFYSMAANGLIPTQASFVNAVNSC 120
           F A+KLFEEVPVRDVVTYNSII  G KVNRPEIALELFYSMAANGL PTQASFVNAVNSC
Sbjct: 262 FFADKLFEEVPVRDVVTYNSIIAVGTKVNRPEIALELFYSMAANGLTPTQASFVNAVNSC 321

Query: 121 SCLGSSIYGQYFHSKTIRYALESDVFVGTALIDFYAKFKMLEEARYCFDEIAEKNLVSWN 180
           SCLGSSIYG+YFHSKT+RYALESDVFVGTALIDFYAKFK LEEA +CFDEIAEKN+VSWN
Sbjct: 322 SCLGSSIYGEYFHSKTVRYALESDVFVGTALIDFYAKFKKLEEAHHCFDEIAEKNVVSWN 381

Query: 181 ALI 184
           ALI
Sbjct: 382 ALI 384

BLAST of Lag0028850 vs. ExPASy TrEMBL
Match: A0A6J1G5W7 (pentatricopeptide repeat-containing protein At3g58590 OS=Cucurbita moschata OX=3662 GN=LOC111451096 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 4.4e-80
Identity = 150/183 (81.97%), Postives = 165/183 (90.16%), Query Frame = 0

Query: 1   MCGGIERSKFSFVGVLSCFSREDDLKFGQQLHGLVIKIGFYYEVLVVNCLMNMYLQCGGF 60
           M G +E SKFSFV VLSCFSR++DLKFGQQLHG+V+KIGFYYEVLVVN LMNMYLQCGGF
Sbjct: 206 MYGEMELSKFSFVSVLSCFSRKEDLKFGQQLHGIVVKIGFYYEVLVVNSLMNMYLQCGGF 265

Query: 61  FLAEKLFEEVPVRDVVTYNSIIGSGAKVNRPEIALELFYSMAANGLIPTQASFVNAVNSC 120
           +LAEKLFEEVPV DVVTYNSII +G KV++PE+ALELFY+M   GLIPTQASFVN V+SC
Sbjct: 266 YLAEKLFEEVPVLDVVTYNSIISAGTKVDKPELALELFYNMIEKGLIPTQASFVNCVSSC 325

Query: 121 SCLGSSIYGQYFHSKTIRYALESDVFVGTALIDFYAKFKMLEEARYCFDEIAEKNLVSWN 180
           S + SSIYG+YFHSKTIR A ESDVFVGTALIDFYAKFK LEEAR+CFDEI EKNLVSWN
Sbjct: 326 SSMESSIYGEYFHSKTIRSAFESDVFVGTALIDFYAKFKKLEEARHCFDEITEKNLVSWN 385

Query: 181 ALI 184
           ALI
Sbjct: 386 ALI 388

BLAST of Lag0028850 vs. ExPASy TrEMBL
Match: A0A6J1C0G3 (pentatricopeptide repeat-containing protein At3g58590-like OS=Momordica charantia OX=3673 GN=LOC111006323 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.3e-79
Identity = 149/183 (81.42%), Postives = 164/183 (89.62%), Query Frame = 0

Query: 1   MCGGIERSKFSFVGVLSCFSREDDLKFGQQLHGLVIKIGFYYEVLVVNCLMNMYLQCGGF 60
           M GG+  SKFSFVGVLSCFS E+DLKFGQQLHG+VIKIGFY EVLVVN LMNMYLQCGGF
Sbjct: 206 MSGGMGLSKFSFVGVLSCFSCEEDLKFGQQLHGIVIKIGFYNEVLVVNSLMNMYLQCGGF 265

Query: 61  FLAEKLFEEVPVRDVVTYNSIIGSGAKVNRPEIALELFYSMAANGLIPTQASFVNAVNSC 120
           FLAEKLF EVP+RDVVTYNSIIG+  KV +PEIALELFY M+ +GLIPTQASFVN V SC
Sbjct: 266 FLAEKLFYEVPIRDVVTYNSIIGAWEKVKKPEIALELFYDMSMDGLIPTQASFVNVVYSC 325

Query: 121 SCLGSSIYGQYFHSKTIRYALESDVFVGTALIDFYAKFKMLEEARYCFDEIAEKNLVSWN 180
           SCL SSIYG+YFHSK IR+ALESDV+VGT+L+ FYAKF+ +EEARYCFDEIAEKNLVSWN
Sbjct: 326 SCLESSIYGEYFHSKIIRFALESDVYVGTSLVGFYAKFRKMEEARYCFDEIAEKNLVSWN 385

Query: 181 ALI 184
            LI
Sbjct: 386 TLI 388

BLAST of Lag0028850 vs. ExPASy TrEMBL
Match: A0A6J1I2K3 (pentatricopeptide repeat-containing protein At3g58590 OS=Cucurbita maxima OX=3661 GN=LOC111469926 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 6.3e-79
Identity = 150/183 (81.97%), Postives = 161/183 (87.98%), Query Frame = 0

Query: 1   MCGGIERSKFSFVGVLSCFSREDDLKFGQQLHGLVIKIGFYYEVLVVNCLMNMYLQCGGF 60
           M G  E  KFSFV VLSCFSR++DLKFGQQLHG+V+KIGFYYEVLVVN LMNMYLQCGGF
Sbjct: 206 MYGETELPKFSFVSVLSCFSRKEDLKFGQQLHGIVVKIGFYYEVLVVNSLMNMYLQCGGF 265

Query: 61  FLAEKLFEEVPVRDVVTYNSIIGSGAKVNRPEIALELFYSMAANGLIPTQASFVNAVNSC 120
           +LAEKLF EVPVRDVVTYNSII +G KV++PE+ALE FYSM   GLIPTQASFVN VNSC
Sbjct: 266 YLAEKLFVEVPVRDVVTYNSIISAGTKVDKPELALEHFYSMIEKGLIPTQASFVNCVNSC 325

Query: 121 SCLGSSIYGQYFHSKTIRYALESDVFVGTALIDFYAKFKMLEEARYCFDEIAEKNLVSWN 180
           S + SSIYG+YFHSKTIR A ESDVFVGTALIDFYAKFK LEEAR CFDEI EKNLVSWN
Sbjct: 326 SSMESSIYGEYFHSKTIRSAFESDVFVGTALIDFYAKFKKLEEARRCFDEITEKNLVSWN 385

Query: 181 ALI 184
           ALI
Sbjct: 386 ALI 388

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008456417.13.1e-8889.07PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Cucumis melo] ... [more]
XP_038902940.11.5e-8789.07pentatricopeptide repeat-containing protein At3g58590 [Benincasa hispida][more]
KAG6604761.11.4e-8082.51Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_023532810.16.9e-8081.97pentatricopeptide repeat-containing protein At3g58590 [Cucurbita pepo subsp. pep... [more]
XP_022947134.19.1e-8081.97pentatricopeptide repeat-containing protein At3g58590 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Q0WN015.2e-3039.44Pentatricopeptide repeat-containing protein At3g58590 OS=Arabidopsis thaliana OX... [more]
Q9LFL51.7e-2535.43Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana OX... [more]
Q3E6Q11.7e-2534.08Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop... [more]
Q9STE12.3e-2534.64Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana OX... [more]
Q9SVP73.0e-2535.00Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
A0A1S3C2S61.5e-8889.07pentatricopeptide repeat-containing protein At3g58590 OS=Cucumis melo OX=3656 GN... [more]
A0A5A7UHJ91.5e-8889.07Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A6J1G5W74.4e-8081.97pentatricopeptide repeat-containing protein At3g58590 OS=Cucurbita moschata OX=3... [more]
A0A6J1C0G31.3e-7981.42pentatricopeptide repeat-containing protein At3g58590-like OS=Momordica charanti... [more]
A0A6J1I2K36.3e-7981.97pentatricopeptide repeat-containing protein At3g58590 OS=Cucurbita maxima OX=366... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 133..185
e-value: 1.7E-7
score: 32.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 2..132
e-value: 1.8E-17
score: 65.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 149..177
e-value: 0.0017
score: 16.4
coord: 76..109
e-value: 5.9E-4
score: 17.8
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 149..175
e-value: 0.01
score: 16.0
coord: 48..71
e-value: 0.12
score: 12.7
coord: 76..105
e-value: 0.0074
score: 16.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 74..108
score: 10.764054
NoneNo IPR availablePANTHERPTHR47929FAMILY NOT NAMEDcoord: 4..183

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0028850.1Lag0028850.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding