Lag0028811 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0028811
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibonuclease H
Locationchr8: 31204189 .. 31205825 (-)
RNA-Seq ExpressionLag0028811
SyntenyLag0028811
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCGGAAGTGCCTCAGAAGTTCAAAATACCAACTTTTCAGCAGTACGACGAGAAGAAGGACCCGGTTCAGCATCCAGACACGTACAAACCCTGGATGGATTTCCATGGAGCGTCTGAAGCAACAAAGTGTCGAGCTTTCGCCCTCACCTTAACAGGGATGACCAAACAACAGTTTAGCAAGCTGCCTTGGAGGTCCATCGGATCGTTCAAGGAGTTAGCACGAGCATTTGTCATGCAATTTCTAGGAGCCAGGGATCGACGTAAGCCAGAGATCAACCTGTTAACCATCAAACAGGGACCAAGAGAAAGCTTACGAGACTATATATCAACGTTCAGTAACGAGGTTCTGCAGTGGAAGGATATGATGACGAAGTTGCACTAACTGTTGTTATTTCAAGTTTGTAGAATGAGAAACTGTTGAATTCAATTGGTGAGAGCCAACCACGCACCTATGTAGAATTCATGACCTGGGTGCAAAGATACATAAGCGCTGAAGAATTGTTGAAGTCGAAGTAGGCAGAAAGGGAAGCCTCGGGAATTACTGCTTACGACCGAAAGAAAGATGATAGAGAAAAAAAACGTCGAGGTGATGAGGAACATCAAGATGAAGCAGGATGCTCCACAGGTCGAGGCCGAGCAAACACCAAGGAAGGTGAGGGCCGAGGAGACTTGAAGGGGAGATTCGATAAATATACTCCACTGTCCGTCCCACCTGAGAAAATCCTGACAGTAGTGCAAAATACAGATTTGTTGAAATGCCTAGAGAAACTCAAGACAGGCCCGAACAGGTGAAATAAAAAAAAGTACTGCATGTCCCATCGAGAACTTGGGCACACCACCCAGAAATGCACACAGTTAAGGGACAAGATAGAAAACTTGATCAAAGAAGGTTACCTGAAGGAGTTTGTCAGTGATGGTAGCCGTATAAAGTCGGGCATGGCAGAATGAGACCGAGATGATGACGATCCGCCACTGGAAATTCGGACTATCTCTGGAGGTTCTGTTGGGGAAGATTCCAGTCGAAAAAGGAAGGTTGGGGCTCGAGAGGCTCGCCTTGAACCAAAACACCAAGGTATGTATTCTCTTCAGTTTGAAAAAACTACACATGCCTTAGAGTTTACAGAGAAAGAAGCTGCTGGAATACATCACCCTCACAATGACGCATTGGTGGTAACTTTGACCATCGTCAATGCAAAAGTCCATCGGATCCTGATTGACGGAGGAAGTTCAACCGATGTTCTCTCCACAACTGTGTTCGAGGCCATGAAGCTAGGAAAAGACCGCTTGAAGCCGAGTCCCACACCATTGGTGGGATTTGGGGGAGAAAAAGTGAGCCCTAAAGGAAGCATTGAACTACCAGTTACCTTTGGAGAAGGGCGACAAATACTGACAAAGATGGTCAACTTCTTGGTAGTAGATTGCGTCTCAGCTTATAACACCATACTGGGAAGGTCGACCTTGCATGAACTCAAAGCCGTGACGTCAACTCACTACCAGATCCTGAAGTTTCCTACCGAGGAAGGTGTAGGAGTGGTGCATGGAGAACAAAGAATATCTCAAGAGTGCTACTTCACAGCACTCAAAGAAACCAAGAAAAGAACCAAAGTAGTCACGTGCTCGAGCAATGGTTGA

mRNA sequence

ATGGAAGCGGAAGTGCCTCAGAAGTTCAAAATACCAACTTTTCAGCAGTACGACGAGAAGAAGGACCCGGTTCAGCATCCAGACACGTACAAACCCTGGATGGATTTCCATGGAGCGTCTGAAGCAACAAAGTGTCGAGCTTTCGCCCTCACCTTAACAGGGATGACCAAACAACAGTTTAGCAAGCTGCCTTGGAGGTCCATCGGATCGTTCAAGGAGTTAGCACGAGCATTTGTCATGCAATTTCTAGGAGCCAGGGATCGACGTAAGCCAGAGATCAACCTGTTAACCATCAAACAGGGACCAAGAGAAAGCTTACGAGACTATATATCAACGTTCAGTAACGAGGCAGAAAGGGAAGCCTCGGGAATTACTGCTTACGACCGAAAGAAAGATGATAGAGAAAAAAAACGTCGAGGTGATGAGGAACATCAAGATGAAGCAGGATGCTCCACAGGTCGAGGCCGAGCAAACACCAAGGAAGGTGAGGGCCGAGGAGACTTGAAGGGGAGATTCGATAAATATACTCCACTGTCCGTCCCACCTGAGAAAATCCTGACAGTAGTGCAAAATACAGATTTGTTGAAATGCCTAGAGAAACTCAAGACAGGCCCGAACAGTCGAAAAAGGAAGGTTGGGGCTCGAGAGGCTCGCCTTGAACCAAAACACCAAGGTATGTATTCTCTTCAGTTTGAAAAAACTACACATGCCTTAGAGTTTACAGAGAAAGAAGCTGCTGGAATACATCACCCTCACAATGACGCATTGGTGGTAACTTTGACCATCGTCAATGCAAAAGTCCATCGGATCCTGATTGACGGAGGAAGTTCAACCGATGTTCTCTCCACAACTGTGTTCGAGGCCATGAAGCTAGGAAAAGACCGCTTGAAGCCGAGTCCCACACCATTGGTGGGATTTGGGGGAGAAAAAGTGAGCCCTAAAGGAAGCATTGAACTACCAGTTACCTTTGGAGAAGGGCGACAAATACTGACAAAGATGGTCAACTTCTTGGTAGTAGATTGCGTCTCAGCTTATAACACCATACTGGGAAGGTCGACCTTGCATGAACTCAAAGCCGTGACGTCAACTCACTACCAGATCCTGAAGTTTCCTACCGAGGAAGGTGTAGGAGTGGTGCATGGAGAACAAAGAATATCTCAAGAGTGCTACTTCACAGCACTCAAAGAAACCAAGAAAAGAACCAAAGTAGTCACGTGCTCGAGCAATGGTTGA

Coding sequence (CDS)

ATGGAAGCGGAAGTGCCTCAGAAGTTCAAAATACCAACTTTTCAGCAGTACGACGAGAAGAAGGACCCGGTTCAGCATCCAGACACGTACAAACCCTGGATGGATTTCCATGGAGCGTCTGAAGCAACAAAGTGTCGAGCTTTCGCCCTCACCTTAACAGGGATGACCAAACAACAGTTTAGCAAGCTGCCTTGGAGGTCCATCGGATCGTTCAAGGAGTTAGCACGAGCATTTGTCATGCAATTTCTAGGAGCCAGGGATCGACGTAAGCCAGAGATCAACCTGTTAACCATCAAACAGGGACCAAGAGAAAGCTTACGAGACTATATATCAACGTTCAGTAACGAGGCAGAAAGGGAAGCCTCGGGAATTACTGCTTACGACCGAAAGAAAGATGATAGAGAAAAAAAACGTCGAGGTGATGAGGAACATCAAGATGAAGCAGGATGCTCCACAGGTCGAGGCCGAGCAAACACCAAGGAAGGTGAGGGCCGAGGAGACTTGAAGGGGAGATTCGATAAATATACTCCACTGTCCGTCCCACCTGAGAAAATCCTGACAGTAGTGCAAAATACAGATTTGTTGAAATGCCTAGAGAAACTCAAGACAGGCCCGAACAGTCGAAAAAGGAAGGTTGGGGCTCGAGAGGCTCGCCTTGAACCAAAACACCAAGGTATGTATTCTCTTCAGTTTGAAAAAACTACACATGCCTTAGAGTTTACAGAGAAAGAAGCTGCTGGAATACATCACCCTCACAATGACGCATTGGTGGTAACTTTGACCATCGTCAATGCAAAAGTCCATCGGATCCTGATTGACGGAGGAAGTTCAACCGATGTTCTCTCCACAACTGTGTTCGAGGCCATGAAGCTAGGAAAAGACCGCTTGAAGCCGAGTCCCACACCATTGGTGGGATTTGGGGGAGAAAAAGTGAGCCCTAAAGGAAGCATTGAACTACCAGTTACCTTTGGAGAAGGGCGACAAATACTGACAAAGATGGTCAACTTCTTGGTAGTAGATTGCGTCTCAGCTTATAACACCATACTGGGAAGGTCGACCTTGCATGAACTCAAAGCCGTGACGTCAACTCACTACCAGATCCTGAAGTTTCCTACCGAGGAAGGTGTAGGAGTGGTGCATGGAGAACAAAGAATATCTCAAGAGTGCTACTTCACAGCACTCAAAGAAACCAAGAAAAGAACCAAAGTAGTCACGTGCTCGAGCAATGGTTGA

Protein sequence

MEAEVPQKFKIPTFQQYDEKKDPVQHPDTYKPWMDFHGASEATKCRAFALTLTGMTKQQFSKLPWRSIGSFKELARAFVMQFLGARDRRKPEINLLTIKQGPRESLRDYISTFSNEAEREASGITAYDRKKDDREKKRRGDEEHQDEAGCSTGRGRANTKEGEGRGDLKGRFDKYTPLSVPPEKILTVVQNTDLLKCLEKLKTGPNSRKRKVGAREARLEPKHQGMYSLQFEKTTHALEFTEKEAAGIHHPHNDALVVTLTIVNAKVHRILIDGGSSTDVLSTTVFEAMKLGKDRLKPSPTPLVGFGGEKVSPKGSIELPVTFGEGRQILTKMVNFLVVDCVSAYNTILGRSTLHELKAVTSTHYQILKFPTEEGVGVVHGEQRISQECYFTALKETKKRTKVVTCSSNG
Homology
BLAST of Lag0028811 vs. NCBI nr
Match: XP_030963881.1 (uncharacterized protein LOC115985047 [Quercus lobata])

HSP 1 Score: 250.0 bits (637), Expect = 3.6e-62
Identity = 159/445 (35.73%), Postives = 229/445 (51.46%), Query Frame = 0

Query: 5   VPQKFKIPTFQQYDEKKDPVQHPDTYKPWMDFHGASEATKCRAFALTLTGMTKQQFSKLP 64
           +P KFK+P+   YD  +DP  H  T+K  M   G  +   CRAF  TL G  +  FSK+P
Sbjct: 34  LPSKFKLPSLDSYDGTRDPFDHIATFKTTMHLQGVPDEIMCRAFPTTLKGSARVWFSKIP 93

Query: 65  WRSIGSFKELARAFVMQFLGARDRRKPEINLLTIKQGPRESLRDYISTFSNEA----ERE 124
             S+ SF+EL++ FV  F+G +  ++   NLLTI+QG  ESLR +I+ F+ EA    E +
Sbjct: 94  PNSVSSFEELSKLFVNNFIGGQRYKRSSSNLLTIEQGENESLRSFITRFNREALSVDEAD 153

Query: 125 ASGITAYDRKKDDREKKRRGDEEHQDEAGCSTGRGRANTKEGEGRGDLKGR----FDKYT 184
              + A       R ++   +     E G    +G   T+E   R   K        +YT
Sbjct: 154 DKLLLAAFHNGRKRSERMDANPSRHHEQGTRPKKGW--TEERRDRESKKPGPSVWNQQYT 213

Query: 185 PLSVPPEKILTVVQNTDLLKCLEKLKTGPNSRKRK-----------------------VG 244
           PL+ P E++L  +++   LK  EK+K  PN R R                        + 
Sbjct: 214 PLNAPLEQVLMQIKDDPSLKWPEKMKGDPNKRNRNKEVEGFPWTRPEGRETEGKDGRIIA 273

Query: 245 AREARLEPKHQGMYSLQFEKTTHAL------------------------EFTEKEAAGIH 304
               R +  H G ++    +   ++                         FT+++A  IH
Sbjct: 274 TTTRRDKSHHWGKFNWPVVQVQESILEGSTERPAFWTITKSKVYGRVDKTFTDEDADRIH 333

Query: 305 HPHNDALVVTLTIVNAKVHRILIDGGSSTDVLSTTVFEAMKLGKDRLKPSPTPLVGFGGE 364
           HPH+DALV++L I N    R+L+D GSS D+L    F+ M+LG+D+L+P  +PLVGFGG 
Sbjct: 334 HPHDDALVISLLIANYTTRRVLVDNGSSADILYYPAFQQMRLGRDQLRPVNSPLVGFGGI 393

Query: 365 KVSPKGSIELPVTFGEGRQILTKMVNFLVVDCVSAYNTILGRSTLHELKAVTSTHYQILK 395
           KV P G+I L V      + +TK VNFLVVDC S+YN I+GR TL+  KAVTST++  +K
Sbjct: 394 KVQPVGTISLSVVVRAYPRQITKDVNFLVVDCPSSYNAIIGRPTLNSWKAVTSTYHLSVK 453

BLAST of Lag0028811 vs. NCBI nr
Match: XP_030955724.1 (uncharacterized protein LOC115977839 [Quercus lobata])

HSP 1 Score: 241.9 bits (616), Expect = 9.7e-60
Identity = 163/497 (32.80%), Postives = 236/497 (47.48%), Query Frame = 0

Query: 5   VPQKFKIPTFQQYDEKKDPVQHPDTYKPWMDFHGASEATKCRAFALTLTGMTKQQFSKLP 64
           +P KFK+P+   YD  +DP  H  T+K  M   G  +   CRAF  TL G  +  FSK+P
Sbjct: 41  LPSKFKLPSLDSYDGTRDPFDHIATFKTTMHLQGVPDEIMCRAFPTTLKGPARVWFSKIP 100

Query: 65  WRSIGSFKELARAFVMQFLGARDRRKPEINLLTIKQGPRESLRDYISTFSNEA------- 124
             S+ SF+EL++ FV  F+G +  ++   +LLTI+QG  ESLR +I+ F+ EA       
Sbjct: 101 PSSVSSFEELSKLFVNNFIGGQRHKRSSSSLLTIEQGENESLRSFITRFNREALSVDEVD 160

Query: 125 ----------------------EREASGITAYDRKKDDREKKRRGDEEHQDEAGCSTGRG 184
                                 E+E   +    RK+ +R +       H ++A       
Sbjct: 161 DKLLLAAFHNGINSDLFIHKLYEKEPQTMAELKRKRAERMEAH--PVRHSEQAPRPKKGR 220

Query: 185 RANTKEGEGR--GDLKGRFDKYTPLSVPPEKILTVVQNTDLLKCLEKLKTGPNSRKRKVG 244
             + KE +GR  G L GR   YTPL+ P  ++L  +++   LK  EK+K  PN R +   
Sbjct: 221 TEDRKERDGRKTGPL-GRSQNYTPLNAPLNQVLMQIKDDPSLKWPEKMKGDPNKRNKNKY 280

Query: 245 AR---------------------------------EARLEPKHQG--------------- 304
            R                                   R + K +G               
Sbjct: 281 CRFHRDHGHDTDECYDLKQQIENLIRQGKLKHFVGRDRTDEKLKGKMEESSRPPLGEIRI 340

Query: 305 ------MYSLQFEKTTH----------------------ALEFTEKEAAGIHHPHNDALV 364
                 M      K T+                       + FT+++A  IHHPH+DA+V
Sbjct: 341 IVGGNPMGQSSKSKKTYLKAVQNVQLSGRPPRTRFMDEPTISFTDEDAERIHHPHDDAIV 400

Query: 365 VTLTIVNAKVHRILIDGGSSTDVLSTTVFEAMKLGKDRLKPSPTPLVGFGGEKVSPKGSI 395
           +TL I +    R+L+D GSS D+L    F+ M+LG+D+L+P  +PL+GF G KV P G+I
Sbjct: 401 ITLLIADYTTRRVLVDNGSSADILYYPTFQQMRLGRDQLRPVCSPLIGFKGMKVQPVGTI 460

BLAST of Lag0028811 vs. NCBI nr
Match: XP_023916366.1 (uncharacterized protein LOC112027956 [Quercus suber])

HSP 1 Score: 235.3 bits (599), Expect = 9.1e-58
Identity = 162/510 (31.76%), Postives = 240/510 (47.06%), Query Frame = 0

Query: 5   VPQKFKIPTFQQYDEKKDPVQHPDTYKPWMDFHGASEATKCRAFALTLTGMTKQQFSKLP 64
           +P KFK+P+   YD  +DP  H  T+K  M   G  +   CRAF  TL G  +  FSK+P
Sbjct: 147 LPPKFKMPSLDSYDGTRDPFDHIATFKTTMHLQGVPDEIMCRAFPTTLKGPARVWFSKIP 206

Query: 65  WRSIGSFKELARAFVMQFLGARDRRKPEINLLTIKQGPRESLRDYISTFSNE-------- 124
             S+ SF+EL++ FV  F+G +  ++   +LLTI+QG  ESLR +I+ F+ +        
Sbjct: 207 PNSVTSFEELSKLFVNNFIGGQRHKRSSSSLLTIEQGENESLRSFITRFNRDALAVDEVD 266

Query: 125 -----------------------------------AEREASGITAYDRKKDDREKKRRGD 184
                                              A+   +   A   KK  R ++   +
Sbjct: 267 DKLLLAAFHNGVHSDLFIHKLYEQAPQTMAELVHSAQNFMNAEDAIIAKKRKRLERVEAN 326

Query: 185 EEHQDEAGCSTGRGRA-NTKEGEGRGDLKGRFDKYTPLSVPPEKILTVVQNTDLLKCLEK 244
              Q E G    +GR  + K+ + +     R  +YTPL++P E++L  +++   LK  EK
Sbjct: 327 PMRQSEQGPRPKKGRTKDRKDRDKKAGPSARNQQYTPLNMPLEQVLMQIKDEPSLKWPEK 386

Query: 245 LKTGPNSRKRKVGAR-------------------------------------EARLEPKH 304
           ++  PN R R    R                                     + +L+ K 
Sbjct: 387 MRGDPNKRNRSKYCRFHRDHGHDTDECFDLKQQIENLIRQGKLKNFLGRDHKDEKLKGKI 446

Query: 305 Q---------------GMYSLQFEKTTHA------------------------LEFTEKE 364
           +               G  + Q  +T  A                        + FT+KE
Sbjct: 447 EESSRPPLGEIRVIIGGSSAGQSSETKKAYLKEVQSVQLFGRSPRARSTDEQTITFTDKE 506

Query: 365 AAGIHHPHNDALVVTLTIVNAKVHRILIDGGSSTDVLSTTVFEAMKLGKDRLKPSPTPLV 395
           A  IHHPH+DA+V+ L I +    R+L+D GSS D+L    F+ M++G+++L+P  +PLV
Sbjct: 507 AERIHHPHDDAIVIALLIADYTTRRVLVDNGSSADILYYPAFQQMRVGRNQLRPVHSPLV 566

BLAST of Lag0028811 vs. NCBI nr
Match: XP_030958631.1 (uncharacterized protein LOC115980538 [Quercus lobata])

HSP 1 Score: 235.0 bits (598), Expect = 1.2e-57
Identity = 165/508 (32.48%), Postives = 234/508 (46.06%), Query Frame = 0

Query: 5   VPQKFKIPTFQQYDEKKDPVQHPDTYKPWMDFHGASEATKCRAFALTLTGMTKQQFSKLP 64
           +P KFK+P+   YD  +DP  H  T+K  M   G  +   CRAF  TL G  +  FSK+P
Sbjct: 103 LPSKFKLPSLDSYDRTRDPFDHIATFKTTMHLQGVPDEIMCRAFPTTLKGPARVWFSKIP 162

Query: 65  WRSIGSFKELARAFVMQFLGARDRRKPEINLLTIKQGPRESLRDYISTFSNEA------- 124
             S+ +F+EL++ FV  F+G +  ++   +LLTI+QG  ESLR +I+ F+ EA       
Sbjct: 163 PSSVSTFEELSKLFVNNFIGGQRHKRSSSSLLTIEQGENESLRSFITRFNREALSVDEVD 222

Query: 125 ----------------------EREASGIT--------------AYDRKKDDREKKRRGD 184
                                 E+E   +               A   KK  R ++    
Sbjct: 223 DKLLLAAFHNGINSDLFIHKLYEKEPQTMAELVHSAQNFMNAEDAIIAKKRKRAERMEAH 282

Query: 185 EEHQDEAGCSTGRGRA-NTKEGEGR--GDLKGRFDKYTPLSVPPEKILTVVQNTDLLKCL 244
                E      +GR  + KE +GR  G L GR   YTPL+ P  ++L  +++   LK  
Sbjct: 283 PARHSEQAPRPKKGRTEDRKERDGRKTGPL-GRSQNYTPLNAPLNQVLMQIKDDPSLKWP 342

Query: 245 EKLKTGPNSRKRKVGAR---------------------------------EARLEPKHQG 304
           EK+K  PN R +    R                                   R + K +G
Sbjct: 343 EKMKGDPNKRNKNKYCRFHRDHGHDTDECYDLKQQIENLIRQGKLKHFVGRDRTDEKQKG 402

Query: 305 ---------------------MYSLQFEKTTH----------------------ALEFTE 364
                                M      K T+                       + FT 
Sbjct: 403 KMEESSRPPLGEIRIIVGGNPMGQSSKSKKTYLKAVQNVQLSGRTPRTRPMDEPTISFTN 462

Query: 365 KEAAGIHHPHNDALVVTLTIVNAKVHRILIDGGSSTDVLSTTVFEAMKLGKDRLKPSPTP 391
           ++A  IHHPH+DA+V+TL I +    R+L+D GSS DVL    F+ M+LG+D+L+   +P
Sbjct: 463 EDAERIHHPHDDAIVITLLIADYTTRRVLVDNGSSADVLYYPAFQQMRLGRDQLRAVCSP 522

BLAST of Lag0028811 vs. NCBI nr
Match: XP_030958629.1 (uncharacterized protein LOC115980536 [Quercus lobata])

HSP 1 Score: 235.0 bits (598), Expect = 1.2e-57
Identity = 165/508 (32.48%), Postives = 234/508 (46.06%), Query Frame = 0

Query: 5   VPQKFKIPTFQQYDEKKDPVQHPDTYKPWMDFHGASEATKCRAFALTLTGMTKQQFSKLP 64
           +P KFK+P+   YD  +DP  H  T+K  M   G  +   CRAF  TL G  +  FSK+P
Sbjct: 146 LPSKFKLPSLDSYDRTRDPFDHIATFKTTMHLQGVPDEIMCRAFPTTLKGPARVWFSKIP 205

Query: 65  WRSIGSFKELARAFVMQFLGARDRRKPEINLLTIKQGPRESLRDYISTFSNEA------- 124
             S+ +F+EL++ FV  F+G +  ++   +LLTI+QG  ESLR +I+ F+ EA       
Sbjct: 206 PSSVSTFEELSKLFVNNFIGGQRHKRSSSSLLTIEQGENESLRSFITRFNREALSVDEVD 265

Query: 125 ----------------------EREASGIT--------------AYDRKKDDREKKRRGD 184
                                 E+E   +               A   KK  R ++    
Sbjct: 266 DKLLLAAFHNGINSDLFIHKLYEKEPQTMAELVHSAQNFMNAEDAIIAKKRKRAERMEAH 325

Query: 185 EEHQDEAGCSTGRGRA-NTKEGEGR--GDLKGRFDKYTPLSVPPEKILTVVQNTDLLKCL 244
                E      +GR  + KE +GR  G L GR   YTPL+ P  ++L  +++   LK  
Sbjct: 326 PARHSEQAPRPKKGRTEDRKERDGRKTGPL-GRSQNYTPLNAPLNQVLMQIKDDPSLKWP 385

Query: 245 EKLKTGPNSRKRKVGAR---------------------------------EARLEPKHQG 304
           EK+K  PN R +    R                                   R + K +G
Sbjct: 386 EKMKGDPNKRNKNKYCRFHRDHGHDTDECYDLKQQIENLIRQGKLKHFVGRDRTDEKQKG 445

Query: 305 ---------------------MYSLQFEKTTH----------------------ALEFTE 364
                                M      K T+                       + FT 
Sbjct: 446 KMEESSRPPLGEIRIIVGGNPMGQSSKSKKTYLKAVQNVQLSGRTPRTRPMDEPTISFTN 505

Query: 365 KEAAGIHHPHNDALVVTLTIVNAKVHRILIDGGSSTDVLSTTVFEAMKLGKDRLKPSPTP 391
           ++A  IHHPH+DA+V+TL I +    R+L+D GSS DVL    F+ M+LG+D+L+   +P
Sbjct: 506 EDAERIHHPHDDAIVITLLIADYTTRRVLVDNGSSADVLYYPAFQQMRLGRDQLRAVCSP 565

BLAST of Lag0028811 vs. ExPASy TrEMBL
Match: A0A2N9EKU0 (Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3233 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.5e-61
Identity = 158/451 (35.03%), Postives = 235/451 (52.11%), Query Frame = 0

Query: 5   VPQKFKIPTFQQYDEKKDPVQHPDTYKPWMDFHGASEATKCRAFALTLTGMTKQQFSKLP 64
           +P KF++P+ + +D  KDP+ H +++K  M   G  +   CRAF  TL G  +  F KL 
Sbjct: 324 LPSKFRMPSLEIFDGSKDPLDHLESFKTVMCLQGVPDEIMCRAFPTTLKGPARIWFKKLM 383

Query: 65  WRSIGSFKELARAFVMQFLGARDRRKPEINLLTIKQGPRESLRDYI-----STFSN---E 124
             S+GSF +L+R F   F+G +   +P  +LL +KQ   E+LR Y+     ST +    E
Sbjct: 384 PSSVGSFAQLSRLFFNHFIGGQRYGRPTTHLLNVKQKEGETLRSYLTRDPPSTMTEMMYE 443

Query: 125 AEREASGITAYDRKKDDREKKRRGD------EEHQDEAGCSTGR-GRANTKEGEGRGDLK 184
           A+R  +G  A   +     KKR+GD      E H+        R GR   + G G  +  
Sbjct: 444 AQRYMNGEEALLARDQATGKKRKGDHADRPAEPHETRPKAQRNRNGRQEERSGRGFNE-- 503

Query: 185 GRFDKYTPLSVPPEKILTVVQNTDLLKCLEKLKTGPNSR--------------------- 244
            RF+++TPL+ P + I   ++N   LK   KL T P+ R                     
Sbjct: 504 -RFNRFTPLNAPVDHIFMQIRNDPALKWPGKLLTDPDKRPRDKYCRFHRDHGHNTENCYD 563

Query: 245 -KRKV--------------------GAREARLEPKHQGMYSLQFEKTTHA----LEFTEK 304
            KR++                     +R+A     H  + + +  K        + FTE+
Sbjct: 564 LKRQIEELIKQGKLQRFIEKGGTSRSSRKAYARQIHNVLVTQKSNKKPRVEDLPITFTEE 623

Query: 305 EAAGIHHPHNDALVVTLTIVNAKVHRILIDGGSSTDVLSTTVFEAMKLGKDRLKPSPTPL 364
           +A  + HPH+DALVVT+ I      R+LID GSS D++  T F+ MK+GKD+L+P  TPL
Sbjct: 624 DACKVVHPHDDALVVTMEIAGYSTRRVLIDNGSSADIIYLTAFQQMKIGKDQLQPIETPL 683

Query: 365 VGFGGEKVSPKGSIELPVTFGEGRQILTKMVNFLVVDCVSAYNTILGRSTLHELKAVTST 395
           VGF G  + P G + L +  G   +   K VNFLVVDC SAYN I+GR TL+ L+AVTST
Sbjct: 684 VGFAGTSIYPLGMVTLQIIAGTHPKQAMKKVNFLVVDCPSAYNVIIGRPTLNRLRAVTST 743

BLAST of Lag0028811 vs. ExPASy TrEMBL
Match: A0A2N9G8B9 (Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23694 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.5e-61
Identity = 158/451 (35.03%), Postives = 235/451 (52.11%), Query Frame = 0

Query: 5   VPQKFKIPTFQQYDEKKDPVQHPDTYKPWMDFHGASEATKCRAFALTLTGMTKQQFSKLP 64
           +P KF++P+ + +D  KDP+ H +++K  M   G  +   CRAF  TL G  +  F KL 
Sbjct: 246 LPSKFRMPSLEIFDGSKDPLDHLESFKTVMCLQGVPDEIMCRAFPTTLKGPARIWFKKLM 305

Query: 65  WRSIGSFKELARAFVMQFLGARDRRKPEINLLTIKQGPRESLRDYI-----STFSN---E 124
             S+GSF +L+R F   F+G +   +P  +LL +KQ   E+LR Y+     ST +    E
Sbjct: 306 PSSVGSFAQLSRLFFNHFIGGQRYGRPTTHLLNVKQKEGETLRSYLTRDPPSTMTEMMYE 365

Query: 125 AEREASGITAYDRKKDDREKKRRGD------EEHQDEAGCSTGR-GRANTKEGEGRGDLK 184
           A+R  +G  A   +     KKR+GD      E H+        R GR   + G G  +  
Sbjct: 366 AQRYMNGEEALLARDQATGKKRKGDHADRPAEPHETRPKAQRNRNGRQEERSGRGFNE-- 425

Query: 185 GRFDKYTPLSVPPEKILTVVQNTDLLKCLEKLKTGPNSR--------------------- 244
            RF+++TPL+ P + I   ++N   LK   KL T P+ R                     
Sbjct: 426 -RFNRFTPLNAPVDHIFMQIRNDPALKWPGKLLTDPDKRPRDKYCRFHRDHGHNTENCYD 485

Query: 245 -KRKV--------------------GAREARLEPKHQGMYSLQFEKTTHA----LEFTEK 304
            KR++                     +R+A     H  + + +  K        + FTE+
Sbjct: 486 LKRQIEELIKQGKLQRFIEKGGTSRSSRKAYARQIHNVLVTQKSNKKPRVEDLPITFTEE 545

Query: 305 EAAGIHHPHNDALVVTLTIVNAKVHRILIDGGSSTDVLSTTVFEAMKLGKDRLKPSPTPL 364
           +A  + HPH+DALVVT+ I      R+LID GSS D++  T F+ MK+GKD+L+P  TPL
Sbjct: 546 DACKVVHPHDDALVVTMEIAGYSTRRVLIDNGSSADIIYLTAFQQMKIGKDQLQPIETPL 605

Query: 365 VGFGGEKVSPKGSIELPVTFGEGRQILTKMVNFLVVDCVSAYNTILGRSTLHELKAVTST 395
           VGF G  + P G + L +  G   +   K VNFLVVDC SAYN I+GR TL+ L+AVTST
Sbjct: 606 VGFAGTSIYPLGMVTLQIIAGTHPKQAMKKVNFLVVDCPSAYNVIIGRPTLNRLRAVTST 665

BLAST of Lag0028811 vs. ExPASy TrEMBL
Match: A0A2N9EL41 (Reverse transcriptase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3176 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.6e-60
Identity = 156/476 (32.77%), Postives = 236/476 (49.58%), Query Frame = 0

Query: 5   VPQKFKIPTFQQYDEKKDPVQHPDTYKPWMDFHGASEATKCRAFALTLTGMTKQQFSKLP 64
           +P +FK+P  + +D  KDP  + + +K  M      E   CRAF L L G  +  F+KL 
Sbjct: 165 LPSRFKVPLLENFDGTKDPFDYLEAFKTIMQLQAVPEEVMCRAFPLGLRGSARVWFNKLE 224

Query: 65  WRSIGSFKELARAFVMQFLGARDRRKPEINLLTIKQGPRESLRDYISTFSNEA---EREA 124
             SIGSF +L+RAF+  F+G++ R +P I+LL++KQ   ESLR ++  F+ EA   +R  
Sbjct: 225 SESIGSFVQLSRAFIDHFIGSQRRGRPPIHLLSVKQMEGESLRTFVHRFNEEAMKIDRPK 284

Query: 125 SGIT-AYDRKKDDREKKRRGDEEHQDEAGCSTGRGRANTKEGEGRGDLKGRFDKYTPLSV 184
             +T A +   D   K+R+  E+ + E           T E +       +F  +TPL+ 
Sbjct: 285 ENVTDALEAMDDPPPKRRKNTEDRKPEPAKQKVPKFTETPERKRTTAPPVKFSSFTPLNT 344

Query: 185 PPEKILTVVQNTDLLKCLEKLKTGPNSRKRKVGAREAR--------------------LE 244
           P +K+L  +Q+   L+   K+++ PNSR + +  R  R                     +
Sbjct: 345 PIDKLLLQIQDDPSLRWPGKIRSDPNSRPKNLYCRFHRDHGHLTEDCVALKEQVETLIRQ 404

Query: 245 PKHQGMYS-----------LQFEKTTH--------------------------------- 304
            K Q   S            Q E+T H                                 
Sbjct: 405 GKLQKYVSRPANTRPAKPPAQREQTEHNRPGPVGEIRTIIGGPASGGTSRASRKAYARQV 464

Query: 305 ------------------ALEFTEKEAAGIHHPHNDALVVTLTIVNAKVHRILIDGGSST 364
                              + F+E++A G H PH+DALV+T+ I      R+++D GSS 
Sbjct: 465 HNIMVVQRPPKNVRLDDQIISFSEEDARGTHQPHDDALVITINIAGFTTRRVMVDNGSSA 524

Query: 365 DVLSTTVFEAMKLGKDRLKPSPTPLVGFGGEKVSPKGSIELPVTFGEGRQILTKMVNFLV 395
           D+L    ++ M+L KD+L+P   PLVGF  +KV P G + LP+T G   + ++K V+FLV
Sbjct: 525 DILYLPTYQQMRLDKDKLRPMDAPLVGFTSDKVCPNGIVTLPITVGTHPKTVSKTVDFLV 584

BLAST of Lag0028811 vs. ExPASy TrEMBL
Match: A0A2N9GGN7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26333 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 6.1e-60
Identity = 153/458 (33.41%), Postives = 229/458 (50.00%), Query Frame = 0

Query: 5   VPQKFKIPTFQQYDEKKDPVQHPDTYKPWMDFHGASEATKCRAFALTLTGMTKQQFSKLP 64
           +P +FK+P  + +D  KDP  + + +K  M      E   CRAF L L G  +  F+KL 
Sbjct: 214 LPSRFKVPLLENFDGTKDPFDYLEAFKTVMQLQAVPEEVMCRAFPLGLRGSARVWFNKLE 273

Query: 65  WRSIGSFKELARAFVMQFLGARDRRKPEINLLTIKQGPRESLRDYISTFSNEA---EREA 124
             SIGSF +L+RAF+  F+G++ R +P  +LL++KQ   ESLR ++  F+ EA   +R  
Sbjct: 274 SESIGSFVQLSRAFIDHFIGSQRRGRPPTHLLSVKQMEGESLRTFVHRFNEEAMKIDRPK 333

Query: 125 SGIT----------------------------------------AYDRKKDDREKKRRGD 184
             +T                                        A +  +D   K+R+  
Sbjct: 334 EDVTVTAFMAGLRKGDFLYELCKDPLETMSEFMYEATKHMNAEDALEAMEDPPPKRRKEA 393

Query: 185 EEHQDEAGCSTGRGRANTKEGEGRGDLKGRFDKYTPLSVPPEKILTVVQNTDLLKCLEKL 244
           E H+ E           T E +       +F  +TPL+ P +K+L  +Q+   L+   K 
Sbjct: 394 ENHKPEPAKQKVPKFTETPERKRTTAPPVKFSSFTPLNTPIDKLLLQIQDDPSLRWPAKP 453

Query: 245 KT---------------------GPNSRKRKVGAREARLEPKHQGMYSLQFEKT----TH 304
            T                     GP S      +R+A     H  M   +  K       
Sbjct: 454 PTPREQAEHNRPGPVGEIRTIVGGPASGGTSKASRKAYARQIHNIMVVQRPPKNIRLDDQ 513

Query: 305 ALEFTEKEAAGIHHPHNDALVVTLTIVNAKVHRILIDGGSSTDVLSTTVFEAMKLGKDRL 364
            + F+E++A G H PH+DALV+T+ I      R+++D GSS D+L    ++ M+L KD+L
Sbjct: 514 IISFSEEDARGTHQPHDDALVITINIAGFTTRRVMVDNGSSADILYLPAYQQMRLDKDKL 573

Query: 365 KPSPTPLVGFGGEKVSPKGSIELPVTFGEGRQILTKMVNFLVVDCVSAYNTILGRSTLHE 395
           +P   PLVGF G+KV P G + LP+T G   + ++K VNFLVV+C SAYN I+GR TL+ 
Sbjct: 574 RPMDAPLVGFTGDKVCPVGIVTLPITVGTHPKTVSKTVNFLVVNCPSAYNAIIGRPTLNR 633

BLAST of Lag0028811 vs. ExPASy TrEMBL
Match: A0A2N9FSH1 (Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17781 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.0e-59
Identity = 150/434 (34.56%), Postives = 228/434 (52.53%), Query Frame = 0

Query: 5   VPQKFKIPTFQQYDEKKDPVQHPDTYKPWMDFHGASEATKCRAFALTLTGMTKQQFSKLP 64
           +P +FK+P  + +D  KDP  + + +K  M      E   CRAF L L G  +  F+KL 
Sbjct: 149 LPSRFKVPLLENFDGTKDPFDYLEAFKTIMQLQAVPEEVMCRAFPLGLRGSARVWFNKLE 208

Query: 65  WRSIGSFKELARAFVMQFLGARDRRKPEINLLTIKQGPRESLRDYISTFSNEA-----ER 124
             SIGSF +L+RAF+  F+G++ R +P  +LL++KQ   ESLR ++  F+ EA      +
Sbjct: 209 SESIGSFVQLSRAFIDHFIGSQRRGRPPTHLLSVKQMEGESLRTFVHRFNEEAMKIDRPK 268

Query: 125 EASGITAY-----------DRKKDDREKKRRGDEEHQDEAGCSTGRGRANTKEGEGRGDL 184
           E   +TA+             +K  R+ K R  E  + +    T      T E +     
Sbjct: 269 EDVTVTAFMAGRPRGYGTTHHRKGGRKLKDRKPEPSKQKVPKFT-----ETPERKRTTAP 328

Query: 185 KGRFDKYTPLSVPPEKILTVVQNTDLLKCLEKLKT--GPNSRKRKVG-----AREARLEP 244
             +F  +TPL+ P +K+        +     ++++  G N      G       E  LE 
Sbjct: 329 PVKFSSFTPLNTPIDKLTLADTRRPITSVARRVRSLEGTNRDTHPAGQTAEEKSEPSLED 388

Query: 245 KHQ------------GMYSLQFE---------KTTHALEFTEKEAAGIHHPHNDALVVTL 304
           +HQ            G Y+  +           TT +    +K+A G H PH+DALV+T+
Sbjct: 389 QHQEEPQEPQGKHMRGKYTTSWSSSAHQRTSASTTRSSLSAKKDARGTHQPHDDALVITI 448

Query: 305 TIVNAKVHRILIDGGSSTDVLSTTVFEAMKLGKDRLKPSPTPLVGFGGEKVSPKGSIELP 364
            I      R+++D GSS D+L    ++ M+L KD+L+P   PLVGF G+KV P G + LP
Sbjct: 449 NIAGFTTRRVMVDNGSSADILYLPAYQQMRLDKDKLRPMDAPLVGFTGDKVCPVGIVTLP 508

Query: 365 VTFGEGRQILTKMVNFLVVDCVSAYNTILGRSTLHELKAVTSTHYQILKFPTEEGVGVVH 395
           +T G   + ++K V+FLVV+C SAYN I+GR TL+ L+AVTST++ +LKFPTE G+G V 
Sbjct: 509 ITVGTHPKTVSKTVDFLVVNCPSAYNAIIGRPTLNRLRAVTSTYHLLLKFPTEHGIGEVR 568

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030963881.13.6e-6235.73uncharacterized protein LOC115985047 [Quercus lobata][more]
XP_030955724.19.7e-6032.80uncharacterized protein LOC115977839 [Quercus lobata][more]
XP_023916366.19.1e-5831.76uncharacterized protein LOC112027956 [Quercus suber][more]
XP_030958631.11.2e-5732.48uncharacterized protein LOC115980538 [Quercus lobata][more]
XP_030958629.11.2e-5732.48uncharacterized protein LOC115980536 [Quercus lobata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2N9EKU01.5e-6135.03Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3233 PE=4 SV=1[more]
A0A2N9G8B91.5e-6135.03Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23694 PE=4 SV=1[more]
A0A2N9EL413.6e-6032.77Reverse transcriptase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3176 PE=4 SV=1[more]
A0A2N9GGN76.1e-6033.41Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26333 PE=4 SV=1[more]
A0A2N9FSH11.0e-5934.56Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17781 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 47..115
e-value: 1.4E-6
score: 28.5
IPR021109Aspartic peptidase domain superfamilyGENE3D2.40.70.10Acid Proteasescoord: 235..380
e-value: 9.6E-11
score: 43.5
IPR021109Aspartic peptidase domain superfamilySUPERFAMILY50630Acid proteasescoord: 258..359
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..150
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 121..174
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 158..172
NoneNo IPR availableCDDcd00303retropepsin_likecoord: 263..355
e-value: 6.04708E-14
score: 65.0504

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0028811.1Lag0028811.1mRNA