Lag0028742 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0028742
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCLAVATA3/ESR (CLE)-related protein 27
Locationchr8: 29641463 .. 29641765 (-)
RNA-Seq ExpressionLag0028742
SyntenyLag0028742
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTTTTTCAGGCAATGTGCGGCGGCGCCACTCCCACACGGCGGCGGCGATTTCTCTCTTCTTTCTTGATCATGGCTTTCTTCATCTGGGTCGTCTTCTGCCACCACCGCCACGAAGCCGCGGCGGCGGCCAGGCCGTTACCGGAAAATCAAAATCCAGAGGGAAGCCATGTCGGCGGCGGCGGCGGAAGCAGGGAGAAGCTCCTCCGGAAGTATTTCAATGGAAGGAGTTTTAGTTCGAGAGGGTTTCAAGAGAGCAAACGAACAGTGCCGAGCTGCCCCGATCCCCTCCACAACTAG

mRNA sequence

ATGGTGGTTTTTCAGGCAATGTGCGGCGGCGCCACTCCCACACGGCGGCGGCGATTTCTCTCTTCTTTCTTGATCATGGCTTTCTTCATCTGGGTCGTCTTCTGCCACCACCGCCACGAAGCCGCGGCGGCGGCCAGGCCGTTACCGGAAAATCAAAATCCAGAGGGAAGCCATGTCGGCGGCGGCGGCGGAAGCAGGGAGAAGCTCCTCCGGAAGTATTTCAATGGAAGGAGTTTTAGTTCGAGAGGGTTTCAAGAGAGCAAACGAACAGTGCCGAGCTGCCCCGATCCCCTCCACAACTAG

Coding sequence (CDS)

ATGGTGGTTTTTCAGGCAATGTGCGGCGGCGCCACTCCCACACGGCGGCGGCGATTTCTCTCTTCTTTCTTGATCATGGCTTTCTTCATCTGGGTCGTCTTCTGCCACCACCGCCACGAAGCCGCGGCGGCGGCCAGGCCGTTACCGGAAAATCAAAATCCAGAGGGAAGCCATGTCGGCGGCGGCGGCGGAAGCAGGGAGAAGCTCCTCCGGAAGTATTTCAATGGAAGGAGTTTTAGTTCGAGAGGGTTTCAAGAGAGCAAACGAACAGTGCCGAGCTGCCCCGATCCCCTCCACAACTAG

Protein sequence

MVVFQAMCGGATPTRRRRFLSSFLIMAFFIWVVFCHHRHEAAAAARPLPENQNPEGSHVGGGGGSREKLLRKYFNGRSFSSRGFQESKRTVPSCPDPLHN
Homology
BLAST of Lag0028742 vs. NCBI nr
Match: KAG6579278.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157.1 bits (396), Expect = 7.7e-35
Identity = 77/102 (75.49%), Postives = 81/102 (79.41%), Query Frame = 0

Query: 1   MVVFQAMCGGAT--PTRRRRFLSSFLIMAFFIWVVFCHHRHEAAAAARPLPENQNPEGSH 60
           MVVF AM GG    P RRRRFLSSF ++ FFIWVVFCHHRH+A A ARP P NQ PE S 
Sbjct: 1   MVVFPAMSGGGATPPRRRRRFLSSFFLLIFFIWVVFCHHRHQATAVARPFPGNQKPEQS- 60

Query: 61  VGGGGGSREKLLRKYFNGRSFSSRGFQESKRTVPSCPDPLHN 101
           V GG GS+EKLLR YFNGRSF SRGFQE KRTVPSCPDPLHN
Sbjct: 61  VSGGAGSKEKLLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN 101

BLAST of Lag0028742 vs. NCBI nr
Match: KAG7016789.1 (hypothetical protein SDJN02_21899, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.0 bits (380), Expect = 5.5e-33
Identity = 73/93 (78.49%), Postives = 77/93 (82.80%), Query Frame = 0

Query: 9   GGAT-PTRRRRFLSSFLIMAFFIWVVFCHHRHEAAAAARPLPENQNPEGSHVGGGGGSRE 68
           GGAT P RRRRFLSSF ++ FFIWVVFCHHRH+A A ARP P NQ PE S V GG GS+E
Sbjct: 4   GGATPPRRRRRFLSSFFLLIFFIWVVFCHHRHQATAVARPFPGNQKPEQS-VSGGAGSKE 63

Query: 69  KLLRKYFNGRSFSSRGFQESKRTVPSCPDPLHN 101
           KLLR YFNGRSF SRGFQE KRTVPSCPDPLHN
Sbjct: 64  KLLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN 95

BLAST of Lag0028742 vs. NCBI nr
Match: KAG6601785.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032500.1 CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.7 bits (343), Expect = 1.1e-28
Identity = 66/94 (70.21%), Postives = 75/94 (79.79%), Query Frame = 0

Query: 7   MCGGATPTRRRRFLSSFLIMAFFIWVVFCHHRHEAAAAARPLPENQNPEGSHVGGGGGSR 66
           MCGG TPTR+RRFLS+ L+MA FIWVVFCH     A +AR  PEN  PE +HVGGGGGS+
Sbjct: 1   MCGGVTPTRQRRFLSTLLVMALFIWVVFCH--QPGAVSARLFPENLIPEETHVGGGGGSK 60

Query: 67  EKLLRKYFNGRSFSSRGFQESKRTVPSCPDPLHN 101
           EKLLRKYFNG     RGF+++KRTVPSCPDPLHN
Sbjct: 61  EKLLRKYFNG----MRGFEDNKRTVPSCPDPLHN 88

BLAST of Lag0028742 vs. NCBI nr
Match: KAA0063931.1 (putative Clavata3/esr-related 43 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 1.9e-17
Identity = 55/91 (60.44%), Postives = 64/91 (70.33%), Query Frame = 0

Query: 10  GATPTRRRRFLSSFLIMAFFIWVVFCHHRHEAAAAARPLPENQNPEGSHVGGGGGSREKL 69
           GATP+RRRR LS F I+ FFIWVV       A+A ARPL E++NP+     G  GS+E  
Sbjct: 5   GATPSRRRRLLSYFFIILFFIWVVV--GNQAASAMARPLEESENPD----MGAVGSKE-- 64

Query: 70  LRKYFNGRSFSSRGFQESKRTVPSCPDPLHN 101
             KYFNGRS  SR F+E+KRTVPSCPDPLHN
Sbjct: 65  --KYFNGRSLGSREFEENKRTVPSCPDPLHN 85

BLAST of Lag0028742 vs. NCBI nr
Match: KAB1221059.1 (CLAVATA3/ESR (CLE)-related protein 43 [Morella rubra])

HSP 1 Score: 62.0 bits (149), Expect = 3.4e-06
Identity = 39/85 (45.88%), Postives = 49/85 (57.65%), Query Frame = 0

Query: 24  LIMAFFIWVVFCHHRHEAAAAARPLPENQNPEGSHVGGGGG----SREKLLRKYFNGRSF 83
           +I    IWV  C      A A R  P N   + +  G  G     ++E+LLRKYFNGR+F
Sbjct: 10  IIPVLQIWV--CCEYSCQAGAIRIHPGNGEAKVTKEGSRGSLDKKNKEELLRKYFNGRTF 69

Query: 84  ----SSRGFQESKRTVPSCPDPLHN 101
               ++ GF+ESKR VPSCPDPLHN
Sbjct: 70  GFNRTANGFEESKRRVPSCPDPLHN 92

BLAST of Lag0028742 vs. ExPASy Swiss-Prot
Match: Q9LUA1 (CLAVATA3/ESR (CLE)-related protein 27 OS=Arabidopsis thaliana OX=3702 GN=CLE27 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.3e-04
Identity = 30/83 (36.14%), Postives = 39/83 (46.99%), Query Frame = 0

Query: 24  LIMAFFIWVVFCHHRHEAAAAARPLPENQNPEGSHVGGGGGSREKLLRKYFNG------R 83
           +I+  ++  +FC   +    A R  PE           G    E L++KYF         
Sbjct: 18  VILLSYMLHLFC--VYSRVGAIRIFPETP-------ASGKRQEEDLMKKYFGAGKFPPVD 77

Query: 84  SFSSRGFQESKRTVPSCPDPLHN 101
           SF  +G  ESKR VPSCPDPLHN
Sbjct: 78  SFVGKGISESKRIVPSCPDPLHN 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6579278.17.7e-3575.49CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so... [more]
KAG7016789.15.5e-3378.49hypothetical protein SDJN02_21899, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6601785.11.1e-2870.21CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so... [more]
KAA0063931.11.9e-1760.44putative Clavata3/esr-related 43 [Cucumis melo var. makuwa][more]
KAB1221059.13.4e-0645.88CLAVATA3/ESR (CLE)-related protein 43 [Morella rubra][more]
Match NameE-valueIdentityDescription
Q9LUA14.3e-0436.14CLAVATA3/ESR (CLE)-related protein 27 OS=Arabidopsis thaliana OX=3702 GN=CLE27 P... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..100
IPR040274CLAVATA3/ESR (CLE)-related protein 27/43PANTHERPTHR37184CLAVATA3/ESR (CLE)-RELATED PROTEIN 27coord: 14..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0028742.1Lag0028742.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane