Lag0028721 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0028721
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUbiquitin-like domain-containing protein
Locationchr8: 29265928 .. 29266413 (+)
RNA-Seq ExpressionLag0028721
SyntenyLag0028721
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCATCCCAGGGGTGCTTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCGAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCTTTTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCTCGAGCCTCTCTTCAAGCTGTCAAGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCCAGGAAATTCCCGTGCCTCTCTTCAAGCTGTCATAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCGAGGAAATTCCCGAGCCTCTCTTCTAGCTGTCATGGTCATCCCAGGGGTGCTTACACTCTTATGGGGAAAAGCTTGGGGAGGCCGAGGAAATTCCCGAGCCCCTCTTCAAGCTGTCATGGTCATCCCAAGGGTGCTTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCGAGGAAATTCCTGA

mRNA sequence

ATGGTCATCCCAGGGGTGCTTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCGAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCTTTTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCTCGAGCCTCTCTTCAAGCTGTCAAGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCCAGGAAATTCCCGTGCCTCTCTTCAAGCTGTCATAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCGAGGAAATTCCCGAGCCTCTCTTCTAGCTGTCATGGTCATCCCAGGGGTGCTTACACTCTTATGGGGAAAAGCTTGGGGAGGCCGAGGAAATTCCCGAGCCCCTCTTCAAGCTGTCATGGTCATCCCAAGGGTGCTTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCGAGGAAATTCCTGA

Coding sequence (CDS)

ATGGTCATCCCAGGGGTGCTTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCGAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCTTTTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCTCGAGCCTCTCTTCAAGCTGTCAAGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCCAGGAAATTCCCGTGCCTCTCTTCAAGCTGTCATAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCGAGGAAATTCCCGAGCCTCTCTTCTAGCTGTCATGGTCATCCCAGGGGTGCTTACACTCTTATGGGGAAAAGCTTGGGGAGGCCGAGGAAATTCCCGAGCCCCTCTTCAAGCTGTCATGGTCATCCCAAGGGTGCTTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCGAGGAAATTCCTGA

Protein sequence

MVIPGVLTLFWGKAWGGRGNSRASLQAVMVIPGVRTLFWGKAWGGLGNSRASLQAVKVIPGVRTLFWGKAWGGPGNSRASLQAVIVIPGVRTLFWGKAWGGRGNSRASLLAVMVIPGVLTLLWGKAWGGRGNSRAPLQAVMVIPRVLTLFWGKAWGGRGNS
Homology
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BLAST of Lag0028721 vs. NCBI nr
Match: XP_029562089.1 (uncharacterized protein LOC115157883 [Salmo trutta])

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-06
Identity = 48/156 (30.77%), Postives = 67/156 (42.95%), Query Frame = 0 

Query: 4   PGVLTLFWGKAWGGRGNSRASLQAVMVIPGVRTLFWGKAWGGLGNSRASLQAVKVIPGVR 63
           PGVL ++ G  + G G       AV    GV  ++ G  + G G       AV  +PGV 
Sbjct: 27  PGVLEVWAGAVYWGPGVLEVWAGAVYWGLGVLEVWAGAVYWGPGVLEVWAGAVYWVPGVL 86

Query: 64  TLFWGKAWGGPGNSRASLQAVIVIPGVRTLFWGKAWGGRGNSRASLLAVMVIPGVLTLLW 123
            ++ G  + GPG       AV  +PGV  ++ G  + G G       AV   PGVL +  
Sbjct: 87  EVWAGAVYWGPGVLEVWTGAVYWVPGVLEVWTGAVYWGPGVLEVWTGAVYWGPGVLEVWT 146

Query: 124 GKAWGGRGNSRAPLQAVMVIPRVLTLFWGKAWGGRG 160
           G  + G G       AV   P VL ++ G  + G G
Sbjct: 147 GAVYWGPGVLEVWTGAVYWGPGVLEVWAGAVYLGPG 182

The following BLAST results are available for this feature:
BLAST of Lag0028721 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_029562089.11.4e-0630.77uncharacterized protein LOC115157883 [Salmo trutta][more]
BLAST of Lag0028721 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0028721.1Lag0028721.1mRNA