Lag0028057 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0028057
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	WRKY protein
Location	chr8: 11947778 .. 11948693 (-)
RNA-Seq Expression	Lag0028057
Synteny	Lag0028057

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATCAGATGGCTATACAAGAGGCTGCATCACAAGGATTGAAGAGTATGGAGCATCTGATCCGTCTTCTTTCTCACAAACAACCTTCAAGCCATGTCGATTGCTCTGACCTAATTGATGCAACCGTTTCGAAATTCAAGAAAGTGATCTCTCTTCTCAATTGGACCGATCATGCGTGCTTCCGACGAGGTTCGATTTCTATTTCGACCTCCTCCTCGTCATCCACGTTCGACATAGGCAGCAGCGACAATAAGTTCTTCTGGTGTGGATTTTGTTTTTGTGTGTTTCCGGTGATCCAAGTGGCTCCGACGTTGTTTCCTCAATGATCAACCAAAAGAGTCGTGAGTTGGAGTGGCGTGCTTTTTGGATAGTATCATAGTGCGAACATAGCATTTCGACAAATTTTCGGCAACTCCTTCGCAAATAACTGCGTTCTTCTTCATCTTTCCAGAGACTTCGATCAATTCGAGCAGTGGGTAAGCAAGATTTAGTAAATTTAAAGTTTATTAAGTCTCCTAGTGAAATACCCATTAATGTTTGGGTCTAAATTTTAAGGTACCCATTGAGATTGGAGCTCGAGTCATCGAAATTGGACCCTTTCAGAACCAGACCAGCAAGGTTAAAGGTTTAAGTTTGGTGAGCATTTTTGATTTAATAGGACGTTGTATCTCATATTACATAAATCGTACAATGTATGTTTCTTCCTATAGTAGGTTCTTTCGAGTCCCTTTTTTGTGTTTCCTTTAAAGTCGAAAGTGGGTTTCAAATGCCACACCAAGGGAGACTATGAGAAAATGGAGGAACGGTAAGTTGAATTTGCTTCTAAAACAATATGGACTCTGTTTTGATGGTTCCCTTGAGGAGAAAAGGGCGTTTGCTATGGGAACCTTCTTGTGGCCTGACCAACTTTGA

mRNA sequence

ATGGATGATCAGATGGCTATACAAGAGGCTGCATCACAAGGATTGAAGAGTATGGAGCATCTGATCCGTCTTCTTTCTCACAAACAACCTTCAAGCCATGTCGATTGCTCTGACCTAATTGATGCAACCGTTTCGAAATTCAAGAAAGTGATCTCTCTTCTCAATTGGACCGATCATGCGTGCTTCCGACGAGGTTCGATTTCTATTTCGACCTCCTCCTCGTCATCCACGTTCGACATAGGCAGCAGCGACAATAAGTTCTTCTGGTACCCATTGAGATTGGAGCTCGAGTCATCGAAATTGGACCCTTTCAGAACCAGACCAGCAAGTCGAAAGTGGGTTTCAAATGCCACACCAAGGGAGACTATGAGAAAATGGAGGAACGGTAAGTTGAATTTGCTTCTAAAACAATATGGACTCTGTTTTGATGGTTCCCTTGAGGAGAAAAGGGCGTTTGCTATGGGAACCTTCTTGTGGCCTGACCAACTTTGA

Coding sequence (CDS)

ATGGATGATCAGATGGCTATACAAGAGGCTGCATCACAAGGATTGAAGAGTATGGAGCATCTGATCCGTCTTCTTTCTCACAAACAACCTTCAAGCCATGTCGATTGCTCTGACCTAATTGATGCAACCGTTTCGAAATTCAAGAAAGTGATCTCTCTTCTCAATTGGACCGATCATGCGTGCTTCCGACGAGGTTCGATTTCTATTTCGACCTCCTCCTCGTCATCCACGTTCGACATAGGCAGCAGCGACAATAAGTTCTTCTGGTACCCATTGAGATTGGAGCTCGAGTCATCGAAATTGGACCCTTTCAGAACCAGACCAGCAAGTCGAAAGTGGGTTTCAAATGCCACACCAAGGGAGACTATGAGAAAATGGAGGAACGGTAAGTTGAATTTGCTTCTAAAACAATATGGACTCTGTTTTGATGGTTCCCTTGAGGAGAAAAGGGCGTTTGCTATGGGAACCTTCTTGTGGCCTGACCAACTTTGA

Protein sequence

MDDQMAIQEAASQGLKSMEHLIRLLSHKQPSSHVDCSDLIDATVSKFKKVISLLNWTDHACFRRGSISISTSSSSSTFDIGSSDNKFFWYPLRLELESSKLDPFRTRPASRKWVSNATPRETMRKWRNGKLNLLLKQYGLCFDGSLEEKRAFAMGTFLWPDQL

Homology

[Close]

BLAST of Lag0028057 vs. NCBI nr
Match: AGZ01975.1 (WRKY11 [Luffa aegyptiaca] >AGZ01976.1 WRKY11 [Luffa aegyptiaca])

HSP 1 Score: 128.6 bits (322), Expect = 4.8e-26
Identity = 68/76 (89.47%), Postives = 70/76 (92.11%), Query Frame = 0


Query: 1  MDDQMAIQEAASQGLKSMEHLIRLLSHKQPSSHVDCSDLIDATVSKFKKVISLLNWTDHA 60
          MDDQMA+QEAASQGLKSMEHLIRLLSHKQPSSHVDCSDL DATVSKFKKVISLLN T HA
Sbjct: 11 MDDQMAVQEAASQGLKSMEHLIRLLSHKQPSSHVDCSDLTDATVSKFKKVISLLNRTGHA 70

Query: 61 CFRRGSISISTSSSSS 77
           FRRG +S STSSSSS
Sbjct: 71 RFRRGPVSNSTSSSSS 86

[Close]

BLAST of Lag0028057 vs. NCBI nr
Match: XP_022981754.1 (probable WRKY transcription factor 17 [Cucurbita maxima])

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-25
Identity = 67/76 (88.16%), Postives = 70/76 (92.11%), Query Frame = 0


Query: 1  MDDQMAIQEAASQGLKSMEHLIRLLSHKQPSSHVDCSDLIDATVSKFKKVISLLNWTDHA 60
          MDDQMAIQEAASQGLKSMEHL+RLLSHKQPS+HVDCSDL DATVSKFKKVISLLN T HA
Sbjct: 11 MDDQMAIQEAASQGLKSMEHLVRLLSHKQPSNHVDCSDLTDATVSKFKKVISLLNRTGHA 70

Query: 61 CFRRGSISISTSSSSS 77
           FRRG +S STSSSSS
Sbjct: 71 RFRRGPVSNSTSSSSS 86

[Close]

BLAST of Lag0028057 vs. NCBI nr
Match: KAG7037566.1 (putative WRKY transcription factor 11 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-25
Identity = 67/76 (88.16%), Postives = 70/76 (92.11%), Query Frame = 0


Query: 1  MDDQMAIQEAASQGLKSMEHLIRLLSHKQPSSHVDCSDLIDATVSKFKKVISLLNWTDHA 60
          MDDQMAIQEAASQGLKSMEHL+RLLSHKQPS+HVDCSDL DATVSKFKKVISLLN T HA
Sbjct: 11 MDDQMAIQEAASQGLKSMEHLVRLLSHKQPSNHVDCSDLTDATVSKFKKVISLLNRTGHA 70

Query: 61 CFRRGSISISTSSSSS 77
           FRRG +S STSSSSS
Sbjct: 71 RFRRGPVSNSTSSSSS 86

[Close]

BLAST of Lag0028057 vs. NCBI nr
Match: XP_022940911.1 (probable WRKY transcription factor 17 [Cucurbita moschata] >KAG6608208.1 putative WRKY transcription factor 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-25
Identity = 67/76 (88.16%), Postives = 70/76 (92.11%), Query Frame = 0


Query: 1  MDDQMAIQEAASQGLKSMEHLIRLLSHKQPSSHVDCSDLIDATVSKFKKVISLLNWTDHA 60
          MDDQMAIQEAASQGLKSMEHL+RLLSHKQPS+HVDCSDL DATVSKFKKVISLLN T HA
Sbjct: 11 MDDQMAIQEAASQGLKSMEHLVRLLSHKQPSNHVDCSDLTDATVSKFKKVISLLNRTGHA 70

Query: 61 CFRRGSISISTSSSSS 77
           FRRG +S STSSSSS
Sbjct: 71 RFRRGPVSNSTSSSSS 86

[Close]

BLAST of Lag0028057 vs. NCBI nr
Match: XP_023524270.1 (probable WRKY transcription factor 17 [Cucurbita pepo subsp. pepo] >AXF54195.1 WRKY4 [Cucurbita pepo])

HSP 1 Score: 124.4 bits (311), Expect = 9.0e-25
Identity = 66/76 (86.84%), Postives = 69/76 (90.79%), Query Frame = 0


Query: 1  MDDQMAIQEAASQGLKSMEHLIRLLSHKQPSSHVDCSDLIDATVSKFKKVISLLNWTDHA 60
          MDDQMAIQEAASQGLKSMEHL+RLLSHKQ S+HVDCSDL DATVSKFKKVISLLN T HA
Sbjct: 11 MDDQMAIQEAASQGLKSMEHLVRLLSHKQSSNHVDCSDLTDATVSKFKKVISLLNRTGHA 70

Query: 61 CFRRGSISISTSSSSS 77
           FRRG +S STSSSSS
Sbjct: 71 RFRRGPVSNSTSSSSS 86

[Close]

BLAST of Lag0028057 vs. ExPASy Swiss-Prot
Match: Q9SJA8 (Probable WRKY transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=WRKY17 PE=1 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 1.7e-18
Identity = 50/74 (67.57%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 1  MDDQMAIQEAASQGLKSMEHLIRLLSHKQPSSHVDCSDLIDATVSKFKKVISLLNWTDHA 60
          M+DQ AIQEAASQGLKSMEHLIR+LS++    +VDCS++ D TVSKFKKVISLLN + HA
Sbjct: 11 MEDQTAIQEAASQGLKSMEHLIRVLSNRPEERNVDCSEITDFTVSKFKKVISLLNRSGHA 70

Query: 61 CFRRGSISISTSSS 75
           FRRG +    SSS
Sbjct: 71 RFRRGPVHSPPSSS 84

[Close]

BLAST of Lag0028057 vs. ExPASy Swiss-Prot
Match: Q9SV15 (Probable WRKY transcription factor 11 OS=Arabidopsis thaliana OX=3702 GN=WRKY11 PE=2 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-17
Identity = 52/77 (67.53%), Postives = 62/77 (80.52%), Query Frame = 0


Query: 1  MDDQMAIQEAASQGLKSMEHLIRLLSHKQPSSH-VDCSDLIDATVSKFKKVISLLNWTDH 60
          +DDQ AIQEAASQGL+SMEHLIR+LS++    H VDCS++ D TVSKFK VISLLN T H
Sbjct: 11 IDDQTAIQEAASQGLQSMEHLIRVLSNRPEQQHNVDCSEITDFTVSKFKTVISLLNRTGH 70

Query: 61 ACFRRGSISISTSSSSS 77
          A FRRG +  STSS++S
Sbjct: 71 ARFRRGPVH-STSSAAS 86

[Close]

BLAST of Lag0028057 vs. ExPASy Swiss-Prot
Match: Q0JEE2 (WRKY transcription factor WRKY51 OS=Oryza sativa subsp. japonica OX=39947 GN=WRKY51 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.1e-12
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 1   MDDQMAIQEAASQGLKSMEHLIRLLSH-----------KQPSSHVDCSDLIDATVSKFKK 60
           +D+Q+AIQEAA+ GL+ MEHLI  LS            ++    VDC ++ D TVSKFKK
Sbjct: 13  VDEQVAIQEAAAAGLRGMEHLILQLSQTGTSERSPAPAQEQQQQVDCREITDMTVSKFKK 72

Query: 61  VISLLNWTDHACFRRGSISISTSSSSST 78
           VIS+LN T HA FRRG +   +S  +++
Sbjct: 73  VISMLNRTGHARFRRGPVVAQSSGPAAS 100

[Close]

BLAST of Lag0028057 vs. ExPASy Swiss-Prot
Match: Q6IEN1 (WRKY transcription factor WRKY51 OS=Oryza sativa subsp. indica OX=39946 GN=WRKY51 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.3e-12
Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 1   MDDQMAIQEAASQGLKSMEHLIRLLS---------------HKQPSSHVDCSDLIDATVS 60
           +D+Q+AIQEAA+ GL+ MEHLI  LS                +Q    VDC ++ D TVS
Sbjct: 13  VDEQVAIQEAAAAGLRGMEHLILQLSQTGTSERSPAPAPAQEQQQQQQVDCREITDMTVS 72

Query: 61  KFKKVISLLNWTDHACFRRGSISISTSSSSST 78
           KFKKVIS+LN T HA FRRG +   +S  +++
Sbjct: 73  KFKKVISMLNRTGHARFRRGPVVAQSSGPAAS 104

[Close]

BLAST of Lag0028057 vs. ExPASy Swiss-Prot
Match: O22176 (Probable WRKY transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=WRKY15 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.1e-04
Identity = 38/87 (43.68%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 3   DQMAIQEAASQGLKSMEHLIRLLSH-----KQPSSH------VDCSDL-------IDATV 62
           D  A+QEAA+ GLKS+E+ I L+S       QPSS          +DL        DA V
Sbjct: 17  DSFAVQEAAASGLKSIENFIGLMSRDSFNSDQPSSSSASASASAAADLESARNTTADAAV 76

Query: 63  SKFKKVISLLN--WTDHACFRRGSISI 70
           SKFK+VISLL+   T HA FRR  + +
Sbjct: 77  SKFKRVISLLDRTRTGHARFRRAPVHV 103

The following BLAST results are available for this feature:

BLAST of Lag0028057 vs. NCBI nr


Match Name	E-value	Identity	Description
AGZ01975.1	4.8e-26	89.47	WRKY11 [Luffa aegyptiaca] >AGZ01976.1 WRKY11 [Luffa aegyptiaca]	[more]
XP_022981754.1	1.1e-25	88.16	probable WRKY transcription factor 17 [Cucurbita maxima]	[more]
KAG7037566.1	1.1e-25	88.16	putative WRKY transcription factor 11 [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_022940911.1	1.1e-25	88.16	probable WRKY transcription factor 17 [Cucurbita moschata] >KAG6608208.1 putativ...	[more]
XP_023524270.1	9.0e-25	86.84	probable WRKY transcription factor 17 [Cucurbita pepo subsp. pepo] >AXF54195.1 W...	[more]

BLAST of Lag0028057 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJA8	1.7e-18	67.57	Probable WRKY transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=WRKY17 ...	[more]
Q9SV15	1.4e-17	67.53	Probable WRKY transcription factor 11 OS=Arabidopsis thaliana OX=3702 GN=WRKY11 ...	[more]
Q0JEE2	4.1e-12	46.59	WRKY transcription factor WRKY51 OS=Oryza sativa subsp. japonica OX=39947 GN=WRK...	[more]
Q6IEN1	5.3e-12	45.65	WRKY transcription factor WRKY51 OS=Oryza sativa subsp. indica OX=39946 GN=WRKY5...	[more]
O22176	1.1e-04	43.68	Probable WRKY transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=WRKY15 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31282:SF129	WRKY TRANSCRIPTION FACTOR 17-RELATED	coord: 1..87
IPR044810	WRKY transcription factor, plant	PANTHER	PTHR31282	WRKY TRANSCRIPTION FACTOR 21-RELATED	coord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0028057.1	Lag0028057.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005516	calmodulin binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding