Lag0028044 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0028044
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DUF4283 domain-containing protein
Location	chr8: 11505246 .. 11505659 (+)
RNA-Seq Expression	Lag0028044
Synteny	Lag0028044

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCATTGACGAATGCGCTGAACAAGCTTACTTCTTATGAGGTGGTCAAGTCTATCTCCACCTTGGCTAAAGGATACTCGAAGAAGGAAAATCAAGACGTCGAAGAAGTTCACTATGTGGGAAATAGAGCATTCACTCAAGGAGTACCGAACTTCTACCATCCAAGTCTGAGCAATCATGAGAACTTTTCTTATTCCAACACCAAGAATTTATTGCAACCACCGCCAGGATTTGCTTCATCAAGTGTTTCAGAAAAGAAAAGCAACTTGGAGGAAATGGTGGCCTTGTTTATCAAGGAACATAAAGTTTTGAATGTGAATCTCCAGACAACGGTAAATAACCACGACACGACTCTCAAGAATATGGAATCGCAGATAGGACAGATCGCTTCAGCAGTGAACGCCCTTTAG

mRNA sequence

ATGGCATCATTGACGAATGCGCTGAACAAGCTTACTTCTTATGAGGTGGTCAAGTCTATCTCCACCTTGGCTAAAGGATACTCGAAGAAGGAAAATCAAGACGTCGAAGAAGTTCACTATGTGGGAAATAGAGCATTCACTCAAGGAGTACCGAACTTCTACCATCCAAGTCTGAGCAATCATGAGAACTTTTCTTATTCCAACACCAAGAATTTATTGCAACCACCGCCAGGATTTGCTTCATCAAGTGTTTCAGAAAAGAAAAGCAACTTGGAGGAAATGGTGGCCTTGTTTATCAAGGAACATAAAGTTTTGAATGTGAATCTCCAGACAACGGTAAATAACCACGACACGACTCTCAAGAATATGGAATCGCAGATAGGACAGATCGCTTCAGCAGTGAACGCCCTTTAG

Coding sequence (CDS)

ATGGCATCATTGACGAATGCGCTGAACAAGCTTACTTCTTATGAGGTGGTCAAGTCTATCTCCACCTTGGCTAAAGGATACTCGAAGAAGGAAAATCAAGACGTCGAAGAAGTTCACTATGTGGGAAATAGAGCATTCACTCAAGGAGTACCGAACTTCTACCATCCAAGTCTGAGCAATCATGAGAACTTTTCTTATTCCAACACCAAGAATTTATTGCAACCACCGCCAGGATTTGCTTCATCAAGTGTTTCAGAAAAGAAAAGCAACTTGGAGGAAATGGTGGCCTTGTTTATCAAGGAACATAAAGTTTTGAATGTGAATCTCCAGACAACGGTAAATAACCACGACACGACTCTCAAGAATATGGAATCGCAGATAGGACAGATCGCTTCAGCAGTGAACGCCCTTTAG

Protein sequence

MASLTNALNKLTSYEVVKSISTLAKGYSKKENQDVEEVHYVGNRAFTQGVPNFYHPSLSNHENFSYSNTKNLLQPPPGFASSSVSEKKSNLEEMVALFIKEHKVLNVNLQTTVNNHDTTLKNMESQIGQIASAVNAL

Homology

[Close]

BLAST of Lag0028044 vs. NCBI nr
Match: XP_030970157.1 (uncharacterized protein LOC115990464 [Quercus lobata])

HSP 1 Score: 102.1 bits (253), Expect = 4.0e-18
Identity = 62/148 (41.89%), Postives = 90/148 (60.81%), Query Frame = 0


Query: 1   MASLTNALNKLTSYEVVKSISTLAKGYSKKENQDV--EEVHYVGNRAFT---QGVPNFYH 60
           +ASL++ ++ LT+  + +S   +A         +V  E+V Y+ NR +      +PN+YH
Sbjct: 244 VASLSHQVSTLTTQRIPQSAEYVAVSSMTVPMNEVSQEQVQYINNRNYNYRGNPMPNYYH 303

Query: 61  PSLSNHENFSYSNTKNLLQPPPGFASSSVSEKKSNLEEMVALFIKEHKVLNV-------N 120
           P L NHENFSY NTKN+LQPPPGF  S  SEKK +LE+ +  F++E K           N
Sbjct: 304 PGLRNHENFSYGNTKNVLQPPPGF-DSQPSEKKMSLEDAMVSFVEETKARFKKSDSRLDN 363

Query: 121 LQTTVNNHDTTLKNMESQIGQIASAVNA 137
           ++T  NN   T+KN+E QIGQ+A+ +NA
Sbjct: 364 IETHCNNMAATMKNLEVQIGQLATTINA 390

[Close]

BLAST of Lag0028044 vs. NCBI nr
Match: XP_023874613.1 (uncharacterized protein LOC111987139 [Quercus suber])

HSP 1 Score: 98.2 bits (243), Expect = 5.8e-17
Identity = 59/148 (39.86%), Postives = 88/148 (59.46%), Query Frame = 0


Query: 1   MASLTNALNKLTSYEVVKSISTLAKGYSKKENQDV--EEVHYVGNRAFT---QGVPNFYH 60
           +ASL++ ++ LT+  + +    +A         +   E+V Y+ NR +      +PN+YH
Sbjct: 244 VASLSHQVSALTTQRIPQGAEYVAASSMTVPMNEASQEQVQYINNRNYNYRGNPMPNYYH 303

Query: 61  PSLSNHENFSYSNTKNLLQPPPGFASSSVSEKKSNLEEMVALFIKEHKVLNV-------N 120
           P L NHENFSY NTKN+LQPPPGF  S  SEKK +LE+ +  F++E K           N
Sbjct: 304 PGLRNHENFSYGNTKNVLQPPPGF-DSQPSEKKMSLEDAMVSFVEETKATFKKSDSQLDN 363

Query: 121 LQTTVNNHDTTLKNMESQIGQIASAVNA 137
           ++T  +N   T+KN+E QIGQ+A+ +NA
Sbjct: 364 IETHCSNMGATMKNLEVQIGQLATTINA 390

[Close]

BLAST of Lag0028044 vs. NCBI nr
Match: XP_023903214.1 (uncharacterized protein LOC112015077 [Quercus suber])

HSP 1 Score: 97.8 bits (242), Expect = 7.6e-17
Identity = 59/148 (39.86%), Postives = 89/148 (60.14%), Query Frame = 0


Query: 1   MASLTNALNKLTSYEVVKSISTLAKGYSKKENQDV--EEVHYVGNRAFT---QGVPNFYH 60
           +ASL++ ++ L++  + +S   +A         +   E+V Y+ NR +      +PN+YH
Sbjct: 244 VASLSHQVSALSTQRIPQSAEYVAASSMTVPMNEASQEQVQYINNRNYNYRGNPMPNYYH 303

Query: 61  PSLSNHENFSYSNTKNLLQPPPGFASSSVSEKKSNLEEMVALFIKEHKVLNV-------N 120
           P L NHENFSY NTKN+LQPPPGF  S  SEKK +LE+ +  F++E K           N
Sbjct: 304 PGLRNHENFSYGNTKNVLQPPPGF-DSQPSEKKMSLEDAMVSFVEETKARFKKSDSRLDN 363

Query: 121 LQTTVNNHDTTLKNMESQIGQIASAVNA 137
           ++T  +N   T+KN+E QIGQ+A+ +NA
Sbjct: 364 IETHCSNMGATMKNLEVQIGQLATTINA 390

[Close]

BLAST of Lag0028044 vs. NCBI nr
Match: XP_023929660.1 (uncharacterized protein LOC112040975 [Quercus suber])

HSP 1 Score: 97.4 bits (241), Expect = 9.9e-17
Identity = 59/148 (39.86%), Postives = 88/148 (59.46%), Query Frame = 0


Query: 1   MASLTNALNKLTSYEVVKSISTLAKGYSKKENQDV--EEVHYVGNRAFT---QGVPNFYH 60
           +ASL++ ++ LT+  + +S+  +A         +   E V Y+ NR +      +PN+YH
Sbjct: 244 VASLSHQVSALTTQRIPQSVEYVAASSMTVPMNEASQEHVQYINNRNYNYHGNPMPNYYH 303

Query: 61  PSLSNHENFSYSNTKNLLQPPPGFASSSVSEKKSNLEEMVALFIKEHKV-------LNVN 120
           P L NHENFSY NTKN+LQPPPGF  S  SEKK +LE+ +  F++E K           N
Sbjct: 304 PGLRNHENFSYGNTKNVLQPPPGF-DSQPSEKKMSLEDAMVSFVEETKARFRKSDSQLDN 363

Query: 121 LQTTVNNHDTTLKNMESQIGQIASAVNA 137
           ++T  +N    +KN+E QIGQ+A+ +NA
Sbjct: 364 IETHCSNMGAIMKNLEVQIGQLATTINA 390

[Close]

BLAST of Lag0028044 vs. NCBI nr
Match: XP_030969898.1 (uncharacterized protein LOC115990189 [Quercus lobata])

HSP 1 Score: 97.4 bits (241), Expect = 9.9e-17
Identity = 60/148 (40.54%), Postives = 88/148 (59.46%), Query Frame = 0


Query: 1   MASLTNALNKLTSYEVVKSISTLAKGYSKKENQDV--EEVHYVGNRAFT---QGVPNFYH 60
           +ASL+  ++ LT+  + +S   +A         +   E+V Y+ NR +      +PN+YH
Sbjct: 191 VASLSYQVSTLTTQRIPQSAEYVAASSMTVPMNEASQEQVQYINNRNYNYRGNPMPNYYH 250

Query: 61  PSLSNHENFSYSNTKNLLQPPPGFASSSVSEKKSNLEEMVALFIKEHKVLNV-------N 120
           P L NHENFSY NTKN+LQPPPGF  S  SEKK +LE+ +  F++E K           N
Sbjct: 251 PRLRNHENFSYGNTKNVLQPPPGF-DSQPSEKKMSLEDAMISFVEETKARFKKSDSRLDN 310

Query: 121 LQTTVNNHDTTLKNMESQIGQIASAVNA 137
           ++T  +N   T+KN+E QIGQ+A+ +NA
Sbjct: 311 IETHCSNMGATMKNLEVQIGQLATTINA 337

The following BLAST results are available for this feature:

BLAST of Lag0028044 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_030970157.1	4.0e-18	41.89	uncharacterized protein LOC115990464 [Quercus lobata]	[more]
XP_023874613.1	5.8e-17	39.86	uncharacterized protein LOC111987139 [Quercus suber]	[more]
XP_023903214.1	7.6e-17	39.86	uncharacterized protein LOC112015077 [Quercus suber]	[more]
XP_023929660.1	9.9e-17	39.86	uncharacterized protein LOC112040975 [Quercus suber]	[more]
XP_030969898.1	9.9e-17	40.54	uncharacterized protein LOC115990189 [Quercus lobata]	[more]

BLAST of Lag0028044 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0028044.1	Lag0028044.1	mRNA