Lag0028039 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0028039
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	40S ribosomal protein S3a
Location	chr8: 11217404 .. 11217718 (-)
RNA-Seq Expression	Lag0028039
Synteny	Lag0028039

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATATCAAGGCACCTTCAGTTTTCAGGGAGGCAAAATGAATTGGTTCGCAAGTTCATTCCAGAGTCAATTGACAAGGAGATTGAAAAGGCAACCTCCAGCATCTACCCTCTTCAAAATGTGTTTATCCAGAAAGTTAAAATTTTGAAAGCTCCCAAATTCGATCTTGGGAAGTTGATGGAGGTTCATGGTGACTACTCAGAAGATGATAGAGAGAGAGGGCTACCAGGCAATGTGGGGAACATATTCATGTACAATTTGAAGACAAAGAAAATGTTTAATTTAAATAGCAAAGGAAGGTGTGGATTATTGTAG

mRNA sequence

ATGATATCAAGGCACCTTCAGTTTTCAGGGAGGCAAAATGAATTGGTTCGCAAGTTCATTCCAGAGTCAATTGACAAGGAGATTGAAAAGGCAACCTCCAGCATCTACCCTCTTCAAAATGTGTTTATCCAGAAAGTTAAAATTTTGAAAGCTCCCAAATTCGATCTTGGGAAGTTGATGGAGGTTCATGGTGACTACTCAGAAGATGATAGAGAGAGAGGGCTACCAGGCAATGTGGGGAACATATTCATGTACAATTTGAAGACAAAGAAAATGTTTAATTTAAATAGCAAAGGAAGGTGTGGATTATTGTAG

Coding sequence (CDS)

ATGATATCAAGGCACCTTCAGTTTTCAGGGAGGCAAAATGAATTGGTTCGCAAGTTCATTCCAGAGTCAATTGACAAGGAGATTGAAAAGGCAACCTCCAGCATCTACCCTCTTCAAAATGTGTTTATCCAGAAAGTTAAAATTTTGAAAGCTCCCAAATTCGATCTTGGGAAGTTGATGGAGGTTCATGGTGACTACTCAGAAGATGATAGAGAGAGAGGGCTACCAGGCAATGTGGGGAACATATTCATGTACAATTTGAAGACAAAGAAAATGTTTAATTTAAATAGCAAAGGAAGGTGTGGATTATTGTAG

Protein sequence

MISRHLQFSGRQNELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSEDDRERGLPGNVGNIFMYNLKTKKMFNLNSKGRCGLL

Homology

[Close]

BLAST of Lag0028039 vs. NCBI nr
Match: KAG5122977.1 (hypothetical protein JHK82_029714 [Glycine max])

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-20
Identity = 61/84 (72.62%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 14  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED---- 73
           ELVRKFIPE I KEIEKATSSIYPLQNVFI+KVKILKAPKFDLGKLMEVHGDYSED    
Sbjct: 183 ELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGAK 242

Query: 74  -DR--ERGLPGNVGNIFMYNLKTK 91
            DR  +  L      +F YN  TK
Sbjct: 243 VDRPADETLAEEATEVFWYNPITK 266

[Close]

BLAST of Lag0028039 vs. NCBI nr
Match: KCW60692.1 (hypothetical protein EUGRSUZ_H03423 [Eucalyptus grandis])

HSP 1 Score: 109.0 bits (271), Expect = 2.5e-20
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 14  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED 70
           ELVRKFIPESI KEIEKATSSIYPLQNVFI+KVKILKAPKFDLGKLMEVHGDYSED
Sbjct: 183 ELVRKFIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED 238

[Close]

BLAST of Lag0028039 vs. NCBI nr
Match: XP_038875051.1 (40S ribosomal protein S3a [Benincasa hispida])

HSP 1 Score: 109.0 bits (271), Expect = 2.5e-20
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 14  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED 70
           ELVRKFIPESI KEIEKATSSIYPLQNVFI+KVKILKAPKFDLGKLMEVHGDYSED
Sbjct: 183 ELVRKFIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED 238

[Close]

BLAST of Lag0028039 vs. NCBI nr
Match: XP_034930999.1 (40S ribosomal protein S3a-2 [Populus alba] >TKS03708.1 ribosomal protein S3a [Populus alba])

HSP 1 Score: 109.0 bits (271), Expect = 2.5e-20
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 14  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED 70
           ELVRKFIPESI KEIEKATSSIYPLQNVFI+KVKILKAPKFDLGKLMEVHGDYSED
Sbjct: 183 ELVRKFIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED 238

[Close]

BLAST of Lag0028039 vs. NCBI nr
Match: XP_011030646.1 (PREDICTED: 40S ribosomal protein S3a-2-like [Populus euphratica])

HSP 1 Score: 109.0 bits (271), Expect = 2.5e-20
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 14  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED 70
           ELVRKFIPESI KEIEKATSSIYPLQNVFI+KVKILKAPKFDLGKLMEVHGDYSED
Sbjct: 183 ELVRKFIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED 238

[Close]

BLAST of Lag0028039 vs. ExPASy Swiss-Prot
Match: P33444 (40S ribosomal protein S3a OS=Catharanthus roseus OX=4058 GN=RPS3A PE=2 SV=4)

HSP 1 Score: 106.3 bits (264), Expect = 2.1e-22
Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 14  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSEDD 71
           +LV+KFIPESI +EIEKATSSIYPLQNVFI+KVKILKAPKFDLGKLMEVHGDY+EDD
Sbjct: 183 DLVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDD 239

[Close]

BLAST of Lag0028039 vs. ExPASy Swiss-Prot
Match: Q8GTE3 (40S ribosomal protein S3a OS=Cicer arietinum OX=3827 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.8e-22
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 14  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED 70
           ELVRKFIPE I KEIEKATSSIYPLQNVFI+KVKILK+PKFDLGKLMEVHGDYSED
Sbjct: 183 ELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKSPKFDLGKLMEVHGDYSED 238

[Close]

BLAST of Lag0028039 vs. ExPASy Swiss-Prot
Match: A5B4K1 (40S ribosomal protein S3a-1 OS=Vitis vinifera OX=29760 GN=GSVIVT00020038001 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.6e-22
Identity = 51/56 (91.07%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 14  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED 70
           ELV+KFIPESI +EIEKATSSIYPLQNV+I+KVKILKAPKFDLGKLMEVHGDYSED
Sbjct: 183 ELVKKFIPESIGREIEKATSSIYPLQNVYIRKVKILKAPKFDLGKLMEVHGDYSED 238

[Close]

BLAST of Lag0028039 vs. ExPASy Swiss-Prot
Match: P49198 (40S ribosomal protein S3a OS=Helianthus annuus OX=4232 GN=RPS3A PE=2 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 3.6e-22
Identity = 51/56 (91.07%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 14  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED 70
           ELV+KFIPESI +EIEKATSSIYPLQNVFI+KVKILKAPKFD+GKLMEVHGDYSED
Sbjct: 183 ELVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSED 238

[Close]

BLAST of Lag0028039 vs. ExPASy Swiss-Prot
Match: Q9MBB3 (40S ribosomal protein S3a OS=Daucus carota OX=4039 GN=cyc07 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-21
Identity = 53/68 (77.94%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 2   ISRHLQFSGRQNELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLME 61
           I R+   S    ELV KFIPESI +EIEKATSSI+PLQNVFI+KVKILKAPKFD+GKLME
Sbjct: 171 IMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVFIRKVKILKAPKFDIGKLME 230

Query: 62  VHGDYSED 70
           VHGDYSED
Sbjct: 231 VHGDYSED 238

The following BLAST results are available for this feature:

BLAST of Lag0028039 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG5122977.1	1.5e-20	72.62	hypothetical protein JHK82_029714 [Glycine max]	[more]
KCW60692.1	2.5e-20	96.43	hypothetical protein EUGRSUZ_H03423 [Eucalyptus grandis]	[more]
XP_038875051.1	2.5e-20	96.43	40S ribosomal protein S3a [Benincasa hispida]	[more]
XP_034930999.1	2.5e-20	96.43	40S ribosomal protein S3a-2 [Populus alba] >TKS03708.1 ribosomal protein S3a [Po...	[more]
XP_011030646.1	2.5e-20	96.43	PREDICTED: 40S ribosomal protein S3a-2-like [Populus euphratica]	[more]

BLAST of Lag0028039 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P33444	2.1e-22	89.47	40S ribosomal protein S3a OS=Catharanthus roseus OX=4058 GN=RPS3A PE=2 SV=4	[more]
Q8GTE3	2.8e-22	92.86	40S ribosomal protein S3a OS=Cicer arietinum OX=3827 PE=2 SV=1	[more]
A5B4K1	3.6e-22	91.07	40S ribosomal protein S3a-1 OS=Vitis vinifera OX=29760 GN=GSVIVT00020038001 PE=3...	[more]
P49198	3.6e-22	91.07	40S ribosomal protein S3a OS=Helianthus annuus OX=4232 GN=RPS3A PE=2 SV=2	[more]
Q9MBB3	1.1e-21	77.94	40S ribosomal protein S3a OS=Daucus carota OX=4039 GN=cyc07 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001593	Ribosomal protein S3Ae	PFAM	PF01015	Ribosomal_S3Ae	coord: 13..52 e-value: 2.6E-11 score: 43.4
None	No IPR available	PANTHER	PTHR11830	40S RIBOSOMAL PROTEIN S3A	coord: 13..70
None	No IPR available	PANTHER	PTHR11830:SF33	40S RIBOSOMAL PROTEIN S3A	coord: 13..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0028039.1	Lag0028039.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome