Lag0028001 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0028001
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	MuDRA-like transposase
Location	chr8: 9807243 .. 9807614 (-)
RNA-Seq Expression	Lag0028001
Synteny	Lag0028001

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGACGTGCACTTGTCGAGAGTTTGATTACTACGAGATTCCATGCTCTCATGCAATCGCCGCAGCCCGAGACCGTAATGTTAATGTGGCCACTCTTTGTTCCCCGGCATATCACACAGAATCCGTGATCCTATCATACGCAGAACCGATATATCCTGTTGGCCCTATGTCTGAGTGGAAGAGATCCGCTGAATTTCAAGAGATGGAGATATTGCCGCCAAAAAGGGTTGCTCGAGTTGGTCGCCGACGGACTGTTCGAATACCATCTGCAGGGGAGAGACCTCAACTACAACAAGTTCATAAGTGCGGTCGATGTGGTAACATAGGTCATAACCGCAAAACTTGTCGTGAACCGCTCTCAATGACATGA

mRNA sequence

ATGAGGACGTGCACTTGTCGAGAGTTTGATTACTACGAGATTCCATGCTCTCATGCAATCGCCGCAGCCCGAGACCGTAATGTTAATGTGGCCACTCTTTGTTCCCCGGCATATCACACAGAATCCGTGATCCTATCATACGCAGAACCGATATATCCTGTTGGCCCTATGTCTGAGTGGAAGAGATCCGCTGAATTTCAAGAGATGGAGATATTGCCGCCAAAAAGGGTTGCTCGAGTTGGTCGCCGACGGACTGTTCGAATACCATCTGCAGGGGAGAGACCTCAACTACAACAAGTTCATAAGTGCGGTCGATGTGGTAACATAGGTCATAACCGCAAAACTTGTCGTGAACCGCTCTCAATGACATGA

Coding sequence (CDS)

ATGAGGACGTGCACTTGTCGAGAGTTTGATTACTACGAGATTCCATGCTCTCATGCAATCGCCGCAGCCCGAGACCGTAATGTTAATGTGGCCACTCTTTGTTCCCCGGCATATCACACAGAATCCGTGATCCTATCATACGCAGAACCGATATATCCTGTTGGCCCTATGTCTGAGTGGAAGAGATCCGCTGAATTTCAAGAGATGGAGATATTGCCGCCAAAAAGGGTTGCTCGAGTTGGTCGCCGACGGACTGTTCGAATACCATCTGCAGGGGAGAGACCTCAACTACAACAAGTTCATAAGTGCGGTCGATGTGGTAACATAGGTCATAACCGCAAAACTTGTCGTGAACCGCTCTCAATGACATGA

Protein sequence

MRTCTCREFDYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMSEWKRSAEFQEMEILPPKRVARVGRRRTVRIPSAGERPQLQQVHKCGRCGNIGHNRKTCREPLSMT

Homology

[Close]

BLAST of Lag0028001 vs. NCBI nr
Match: XP_022159268.1 (uncharacterized protein LOC111025678 [Momordica charantia])

HSP 1 Score: 157.9 bits (398), Expect = 5.5e-35
Identity = 75/118 (63.56%), Postives = 89/118 (75.42%), Query Frame = 0


Query: 4   CTCREFDYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMSEWKRS 63
           C+CREFDY++IPCSHAIAAA  RN+N  +LC  AY T S IL+YAEPI+PVG +S W  S
Sbjct: 397 CSCREFDYFKIPCSHAIAAATMRNINPYSLCDEAYTTNSWILAYAEPIFPVGHISTWNSS 456

Query: 64  AEFQEMEILPPKRVARVGRRRTVRIPSAGERPQLQQVHKCGRCGNIGHNRKTCREPLS 122
            EF  + + PPK V RVGRR+TVRIPS GE   ++Q  KCGRCG  GHNRKTC EPL+
Sbjct: 457 PEFVNIPVEPPKTVPRVGRRKTVRIPSTGE---VRQTRKCGRCGAWGHNRKTCSEPLT 511

[Close]

BLAST of Lag0028001 vs. NCBI nr
Match: XP_022154610.1 (uncharacterized protein LOC111021833 [Momordica charantia])

HSP 1 Score: 156.0 bits (393), Expect = 2.1e-34
Identity = 74/119 (62.18%), Postives = 87/119 (73.11%), Query Frame = 0


Query: 3   TCTCREFDYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMSEWKR 62
           TC+CREFDY++IPCSH IAAA  RN+N  +LC  AY T S IL+YAEPI+PVG +S W  
Sbjct: 207 TCSCREFDYFKIPCSHVIAAAMMRNINPYSLCDEAYTTNSWILAYAEPIFPVGHVSTWNS 266

Query: 63  SAEFQEMEILPPKRVARVGRRRTVRIPSAGERPQLQQVHKCGRCGNIGHNRKTCREPLS 122
           S EF  + + PPK V RVGRR T RIPS GE   ++Q  KCGRCG  GHNRKTC EPL+
Sbjct: 267 SPEFVNIPVEPPKTVPRVGRRNTTRIPSTGE---VRQTRKCGRCGAWGHNRKTCSEPLT 322

[Close]

BLAST of Lag0028001 vs. NCBI nr
Match: XP_022153143.1 (uncharacterized protein LOC111020711 [Momordica charantia])

HSP 1 Score: 155.6 bits (392), Expect = 2.7e-34
Identity = 73/122 (59.84%), Postives = 88/122 (72.13%), Query Frame = 0


Query: 2   RTCTCREFDYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMSEWK 61
           RTC C+EFDY+++PCSHAIA A  RNVN  TLCSPA   E++I +Y EP+YP G   +W 
Sbjct: 77  RTCGCKEFDYFQLPCSHAIATATYRNVNRYTLCSPACSLETLINAYVEPVYPPGDEVDWI 136

Query: 62  RSAEFQEMEILPPKRVARVGRRRTVRIPSAGERPQLQQVHKCGRCGNIGHNRKTCREPLS 121
               F E ++ PPK V RVGR +TVRIPS GE    +QVHKC RCGN+GHNRKTCR+PL 
Sbjct: 137 LPDNFVEFKVEPPKYVKRVGRNQTVRIPSVGE---TRQVHKCNRCGNMGHNRKTCRQPLR 195

Query: 122 MT 124
            T
Sbjct: 197 TT 195

[Close]

BLAST of Lag0028001 vs. NCBI nr
Match: XP_022147770.1 (uncharacterized protein LOC111016625 [Momordica charantia])

HSP 1 Score: 155.2 bits (391), Expect = 3.6e-34
Identity = 70/119 (58.82%), Postives = 90/119 (75.63%), Query Frame = 0


Query: 2   RTCTCREFDYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMSEWK 61
           +TCTC++FDY+EIPCSHAIA A  RN++V +LCS  Y  E++IL YAEP+YP+G   +W 
Sbjct: 94  KTCTCKQFDYFEIPCSHAIAGAVFRNISVHSLCSDRYQIETLILGYAEPVYPLGDEEDWI 153

Query: 62  RSAEFQEMEILPPKRVARVGRRRTVRIPSAGERPQLQQVHKCGRCGNIGHNRKTCREPL 121
              ++    I PPK V  VGR +T RIPSAGE   ++QVHKCGRCGN+GHNR+TCR+PL
Sbjct: 154 LPDDYVPKTIKPPKFVPCVGRHQTTRIPSAGE---VRQVHKCGRCGNVGHNRRTCRQPL 209

[Close]

BLAST of Lag0028001 vs. NCBI nr
Match: XP_022156830.1 (uncharacterized protein LOC111023664 [Momordica charantia])

HSP 1 Score: 154.5 bits (389), Expect = 6.1e-34
Identity = 70/119 (58.82%), Postives = 90/119 (75.63%), Query Frame = 0


Query: 2   RTCTCREFDYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMSEWK 61
           RTC C+EFDY++ PCSHAIAA    NVN  TLCSPAY  +++I +Y EP+YP+G   +W 
Sbjct: 94  RTCECKEFDYFQFPCSHAIAATTYWNVNRYTLCSPAYTIQTLINTYVEPVYPLGDKDDWI 153

Query: 62  RSAEFQEMEILPPKRVARVGRRRTVRIPSAGERPQLQQVHKCGRCGNIGHNRKTCREPL 121
              +F +  + PP+ V+RVGRR+T+RIPSAGE    +QVHKCG CGN+GHNRKTCR+PL
Sbjct: 154 LPDDFVDRIVEPPRYVSRVGRRQTIRIPSAGE---TRQVHKCGWCGNMGHNRKTCRQPL 209

The following BLAST results are available for this feature:

BLAST of Lag0028001 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159268.1	5.5e-35	63.56	uncharacterized protein LOC111025678 [Momordica charantia]	[more]
XP_022154610.1	2.1e-34	62.18	uncharacterized protein LOC111021833 [Momordica charantia]	[more]
XP_022153143.1	2.7e-34	59.84	uncharacterized protein LOC111020711 [Momordica charantia]	[more]
XP_022147770.1	3.6e-34	58.82	uncharacterized protein LOC111016625 [Momordica charantia]	[more]
XP_022156830.1	6.1e-34	58.82	uncharacterized protein LOC111023664 [Momordica charantia]	[more]

BLAST of Lag0028001 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006564	Zinc finger, PMZ-type	SMART	SM00575	26again6	coord: 2..29 e-value: 7.4E-12 score: 55.4
IPR007527	Zinc finger, SWIM-type	PFAM	PF04434	SWIM	coord: 2..24 e-value: 1.7E-8 score: 34.0
IPR007527	Zinc finger, SWIM-type	PROSITE	PS50966	ZF_SWIM	coord: 1..27 score: 9.322008
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 102..118 score: 8.614303

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0028001.1	Lag0028001.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
biological_process	GO:0032196	transposition
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding