Lag0027728 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0027728
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	coiled-coil domain-containing protein SCD2
Location	chr8: 4127105 .. 4127936 (+)
RNA-Seq Expression	Lag0027728
Synteny	Lag0027728

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTTCAAGGCTTCCTCAATGGTCGATGTCATGAACAAGTCTTACATCGGTTCTATTGCCCATTGTTGCTTCAATGAACTGACGTTGCAAGAAGATACAGCTTCTATCGTTGCAGGCCAAGGAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTCTTTTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGCACTACTACAAAAATGGGTTTTAATGACGGAGGAAAAAAAATTCACGGACCTTATAATGACGGACAAAAAACGCGCAGCCTTTTAATGTCGAACGCGCGTTTTTAAAAAATTTTCAGACTTTTAATGACGGGCATTGCCCGTCATTAAAAACACTTTTAATGAGGGGCAATGCCCGTCATTAAAAGTCCGAAATTTTTTAGGTATACTCAATGACCGCCATTAAAAGTTCTGCAGCTTTACTCATTTTTTAGGTTTTTTCTCTCTCCCCGAGCCTATTCTTTCTTTCCTTCTTCTTAGTTTTCTCCGACATTCATCTCCCTCGAGCACCTCGCCTCGTCTTTTCCGTTCTCTCACTATCACCACTGTCGTTCTTCTCCGTTCATGTGTGTGTTTTTCTCGTGTGGATCATTTTTCTCCTCGCCGCTGTTCTTGGTTTTCTCTCTGTTGTTGTTCTCGTTGTGCGTTTTCTCCCTCGAGCCAAGGCATATGGTGTAGATGAGGATGTTGCAGATGAGCGGCTTCAGTTTTGGATCAGTCGTAGTGGACAACCTCCAACTTCACATGATGCTGTGGAGTGTGGATGTGGTACGAAACATGTTTTCCGTTACTGCTGTTACTGGCTTTGA

mRNA sequence

ATGTCGTTCAAGGCTTCCTCAATGGTCGATGTCATGAACAAGTCTTACATCGGTTCTATTGCCCATTGTTGCTTCAATGAACTGACGTTGCAAGAAGATACAGCTTCTATCGTTGCAGGCCAAGGAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTCTTTTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTTTTTTCTCTCTCCCCGAGCCTATTCTTTCTTTCCTTCTTCTTAGTTTTCTCCGACATTCATCTCCCTCGAGCACCTCGCCTCGTCTTTTCCGTTCTCTCACTATCACCACTGTCGTTCTTCTCCGTTCATGTGTGTGTTTTTCTCGTGTGGATCATTTTTCTCCTCGCCGCTGTTCTTGGTTTTCTCTCTGTTGTTGTTCTCGTTGTGCGTTTTCTCCCTCGAGCCAAGGCATATGGTGTAGATGAGGATGTTGCAGATGAGCGGCTTCAGTTTTGGATCAGTCGTAGTGGACAACCTCCAACTTCACATGATGCTGTGGAGTGTGGATGTGGTACGAAACATGTTTTCCGTTACTGCTGTTACTGGCTTTGA

Coding sequence (CDS)

ATGTCGTTCAAGGCTTCCTCAATGGTCGATGTCATGAACAAGTCTTACATCGGTTCTATTGCCCATTGTTGCTTCAATGAACTGACGTTGCAAGAAGATACAGCTTCTATCGTTGCAGGCCAAGGAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTCTTTTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTTTTTTCTCTCTCCCCGAGCCTATTCTTTCTTTCCTTCTTCTTAGTTTTCTCCGACATTCATCTCCCTCGAGCACCTCGCCTCGTCTTTTCCGTTCTCTCACTATCACCACTGTCGTTCTTCTCCGTTCATGTGTGTGTTTTTCTCGTGTGGATCATTTTTCTCCTCGCCGCTGTTCTTGGTTTTCTCTCTGTTGTTGTTCTCGTTGTGCGTTTTCTCCCTCGAGCCAAGGCATATGGTGTAGATGAGGATGTTGCAGATGAGCGGCTTCAGTTTTGGATCAGTCGTAGTGGACAACCTCCAACTTCACATGATGCTGTGGAGTGTGGATGTGGTACGAAACATGTTTTCCGTTACTGCTGTTACTGGCTTTGA

Protein sequence

MSFKASSMVDVMNKSYIGSIAHCCFNELTLQEDTASIVAGQGTTLQGAYTNDKFLFKYNPLFEPDSDVFSLSPSLFFLSFFLVFSDIHLPRAPRLVFSVLSLSPLSFFSVHVCVFLVWIIFLLAAVLGFLSVVVLVVRFLPRAKAYGVDEDVADERLQFWISRSGQPPTSHDAVECGCGTKHVFRYCCYWL

Homology

[Close]

BLAST of Lag0027728 vs. NCBI nr
Match: XP_038894537.1 (coiled-coil domain-containing protein SCD2-like isoform X2 [Benincasa hispida])

HSP 1 Score: 75.9 bits (185), Expect = 4.3e-10
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 139 FLPRAKAYGVDEDVADERLQFWISRSGQPPTSHDAVE 176
           F  RAKAYGVDEDVADERLQFWISRSGQPPTSHDAV+
Sbjct: 336 FWRRAKAYGVDEDVADERLQFWISRSGQPPTSHDAVD 372

[Close]

BLAST of Lag0027728 vs. NCBI nr
Match: KAA0055354.1 (coiled-coil domain-containing protein SCD2 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 4.3e-10
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 139 FLPRAKAYGVDEDVADERLQFWISRSGQPPTSHDAVE 176
           F  RAKAYGVDEDVADERLQFWISRSGQPPTSHDAV+
Sbjct: 525 FWRRAKAYGVDEDVADERLQFWISRSGQPPTSHDAVD 561

[Close]

BLAST of Lag0027728 vs. NCBI nr
Match: KAG7019762.1 (Coiled-coil domain-containing protein SCD2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 75.9 bits (185), Expect = 4.3e-10
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 139 FLPRAKAYGVDEDVADERLQFWISRSGQPPTSHDAVE 176
           F  RAKAYGVDEDVADERLQFWISRSGQPPTSHDAV+
Sbjct: 498 FWRRAKAYGVDEDVADERLQFWISRSGQPPTSHDAVD 534

[Close]

BLAST of Lag0027728 vs. NCBI nr
Match: XP_023519742.1 (coiled-coil domain-containing protein SCD2 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 75.9 bits (185), Expect = 4.3e-10
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 139 FLPRAKAYGVDEDVADERLQFWISRSGQPPTSHDAVE 176
           F  RAKAYGVDEDVADERLQFWISRSGQPPTSHDAV+
Sbjct: 336 FWRRAKAYGVDEDVADERLQFWISRSGQPPTSHDAVD 372

[Close]

BLAST of Lag0027728 vs. NCBI nr
Match: KAG6584171.1 (Coiled-coil domain-containing protein SCD2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.9 bits (185), Expect = 4.3e-10
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 139 FLPRAKAYGVDEDVADERLQFWISRSGQPPTSHDAVE 176
           F  RAKAYGVDEDVADERLQFWISRSGQPPTSHDAV+
Sbjct: 476 FWRRAKAYGVDEDVADERLQFWISRSGQPPTSHDAVD 512

[Close]

BLAST of Lag0027728 vs. ExPASy Swiss-Prot
Match: Q8RWD5 (Coiled-coil domain-containing protein SCD2 OS=Arabidopsis thaliana OX=3702 GN=SCD2 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.1e-04
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 139 FLPRAKAYGVDEDVADERLQFWISRSG--QPPTSHDAVE 176
           F  RAK +GV++D+A+ER+Q WISRS      TSHDA++
Sbjct: 497 FWGRAKLHGVEDDIAEERVQLWISRSSGKSQTTSHDALD 535

The following BLAST results are available for this feature:

BLAST of Lag0027728 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894537.1	4.3e-10	91.89	coiled-coil domain-containing protein SCD2-like isoform X2 [Benincasa hispida]	[more]
KAA0055354.1	4.3e-10	91.89	coiled-coil domain-containing protein SCD2 [Cucumis melo var. makuwa]	[more]
KAG7019762.1	4.3e-10	91.89	Coiled-coil domain-containing protein SCD2 [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023519742.1	4.3e-10	91.89	coiled-coil domain-containing protein SCD2 isoform X3 [Cucurbita pepo subsp. pep...	[more]
KAG6584171.1	4.3e-10	91.89	Coiled-coil domain-containing protein SCD2, partial [Cucurbita argyrosperma subs...	[more]

BLAST of Lag0027728 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWD5	2.1e-04	53.85	Coiled-coil domain-containing protein SCD2 OS=Arabidopsis thaliana OX=3702 GN=SC...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0027728.1	Lag0027728.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000911	cytokinesis by cell plate formation