Lag0027703 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0027703
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase
Location	chr8: 3765826 .. 3769068 (+)
RNA-Seq Expression	Lag0027703
Synteny	Lag0027703

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCCAGTAGCAGTCAAGGTAGTGGACGTTCTGGCCCTCCAGACGTACCCGAGGTTAATTCGCATCCTGAGGCGAATCCTCCCATTCCTCCCCCAGCGCCTCCTGTGCTGGCAGCAGAGGCATTGCAGGCGATGCTTGGTAATGCATTCCTAAACAACCTGCAGCACGTCGATGCATATGGAGCCCCTGCTCGTGGCGAGGATATGCAGTTTTTCAAGATCTTCATGAAGGCGAAGCCTCCTTCATTCGATGGGCATTTGGATAGTTCTGAAGCAGTGATAGAATGGACCGCCGCATTGGAAGCAATATTTCAATTTCTTGGAGCTAATGCTCAACAACGGGTCCAAGGAGCTGCCTTTATGCTCAAAGGCCACGCTCGCACTTGGTGGAAGGTTGTGGGTCAAACCGAGAACCGCCCAGAGAATCCCATTTCCTGGTCAGGGTTCAAAGGTCTTGTGCGAGACCATTTTGGCTGTCGTTTTGCTGATGTTGAGCAAGAAGCGGAGTTTGTCTCTCTTGTTCAAGGGACCTTGTCTGTGGAGCAGTACGTCAGAAGGTTCGAAGAGTTGTCCTGCCGAGTTCCGGGGTTGGTTGCCACCGAAGAGATTAGGACCAACCGATTCGTTAATGGGCTCCGCGCAGAAATTCGAGGTTTGGTCAGGCTTGGTCGACCAGCCACCTTTGCAGCAGCCCTAGCGAGCGCTCGGATGTTGGATAGGGACATCCCCAGGACGGATCAATCCCAAGAGGTTGGCACGTCATCTGGTGCCAAGAAAAAGCACGAAGTGGAAGTGTTTGCAACTAGTCAGAAGGTTAGAAGTTCTTCGTCGGATCTAGTGCGTGCGTTGAGGAGTTCTTGCCCTGTGTCACCGATGAGGAGCTCAAGGCGGAATATCCAGAGCTTTACGATGTCGATGATTCTGATGATGAAGATAGCTCCTAAGGTGGGGAGTCAGCGTACCCCTCGCTCAAGGTTAGTAATCCCTTCTCTTCTTAAGTCTATATCTTTTGGTTCTGAAATCTTGTTCTTATGTTTTTTGCTTGTCTTGTGCATAACTGTTCGTTGTTGTGAGTATGCATGGATCATTCCTTCGTTTTTGTGGCATTGTTTGTCAAGCAAATCTTAAAGCTTGAATTGCTAGGGTATCATTTTCCTTGGTGCCTTGTTTTTTAAACCTCTTAGTATAGGCCAGCTTCAAGGAAAAGGAAGTTCCTAGGATGATTTTGCATTCTGGCTTCACAGTTTAAGAGTCAAGGAAGTTAGCGTTCCAAGGATGGCCTTCAAAACCAAGTAAGAGCGTTGCAAGTTTCTATGTTGTCTTTGGACTCATTAATGTTTTGCAACTATGGTGGATTTCATGAACCAGTCTCAAGGTCCTTTTGGACTTGCTCGTGACAATGTTTTTATGTTGGTTTATTCTTAGACCAAGAGTCAAACATTTATTCATGTAACGAGACGTTGGAAGTTGATAAAGAGTCATGACCGCAACTTTAGTTGGCAACATGACAGGGCTATCGTGGATGTACCTAGTAGGGCAGTAATAAGTCTCGTAGCCATTGCTGAGAAGGATGAATGGTTCAAATTTTGAGTTGGCAGCGAAAGTCATGATATAGTCATTTGGTTCAACTTTGGCGATCCCTAGTTGAAAGTGGTGGTTGCAAAAAAAAAAAAAAAAAAACCAACAAAGGGGACTCAAGGTTGGTGAAGTTTGCTAATAAAGCTACCCGTGGTATCGGGACAAAGATATAAGTTGCCATCGAAAGTAGGATGTGAAGGTGTCAAGCCCAAGAGATTAAGCTGTCATTAGCGACCTCTTTTCCTTCAATTAGCATCAGTGGGGAAAAATTCCGTAAGTCATGCAGATCGAAGCTTAGTTCTGATGTTGTCGAACCACTTAAGTTTTTCTTGCACCTTTGTCGAGTTGTCGATGGGCGAGCTTGGCTACAAATGGTGTAGGTTCGAGAACTTGATTCAGGAGTCATTGTACGAATGTTCATCGATGATCCTTCTTGTTTCGTAATTCAAAACCGTGGCATTCTAGAGGAAAATGGCTTGATGAGCTGAAAGCCACCAGTAATAACTGCCTTGAGAAGAAAAGTTTGAGATCAAGATCAATCATTCAAAGTGGCTAGGTGGGCAACTTTCGAGGACGAAAGTTTTTAAAGGTGGGGAGTCTGTAACGCCCCGCGTTTCGAAACTAAGCTATTTTGGATTAATCGTGATTGAATTCTGATGGAAAAAAAATTATTAGAATTCCATTTAGCCTGTAATTGATATTTTGGAATTTTATTGAGATATATTTTTTCTATTGTTGTGCTTAAGTGGCTAGTGGAGATCGGTTAATTTGAGAGGTTACGTGGGAGTGTAAATCGTGGTTTTCCCGTTTTAATTGGAAGTTATGGAGTTAAGGTTTTTTTGTTTTTGAAAAAAGAAAGAAAGAAAGAAAGAACCCAATAAGCCCTAACTTTTCCCTCATCTTCCTCTCTCCATCTCCATCGTGCAGCCCCCTCTCTTAATCTCTCTCTCCCTCTCACGCGTGCGTGCCCCTCCCCCATCTCCCCTGCGTTTTTCTTCTTCTCCCTCCACACAGCAACCGCGCCGCCGTCGCCTGCAGCCTCGCGCCTCCGCCCGCAACCGCGCCCTCGCGTCGCGCAGCAGCCGTCGCCGCGAGCTCCCGCCGTCGCCGCCGTCTCTCTCTCCAGCCGCAGGCAATCTCACCGCCGTCGCTCCTCCCCGTTTCCTCCTCGCCGCAGCCGTCGTCGTCGCTGTCCCTCGCCGGAAAACAAAGACCCAAGCGCCGTCGCTCTTTTTCCCCTCTTTTCCTTGCGTTTCAACAAGGTAAATCTCGTGGGTCTCTCTTTCTCCACGTTTTTCAGCCTTAAAATCGTGGGTAAGCTTTCTTTTTCGTTGTTCTTGGTTGTTTTAAGGCCGATCTAAGTGTTCCTTGGTTCGATTTGTTAGATCTCGCGCCCTAGCAGCTCGAAGCCTCAGTTCCTCGCGTTTTCTCTCTGTCCAGCATCAATTGGCGTTTTCGGCGTCGTTTAGCTATTTCGGTAAGCTTTAACTCTTACCCATTCGTGGTTAGAGCTTAAATAAGAATGCCCAAGTTGTTTAGGTGCTGGAAATTTAATTAGGTGCTGAATTTTCTGATCTGCAGCGCCGTAAAAGTGATCGATTGAGTTCGGATCACTTAAGCTCGAATACCCATTGCCCAAGGAGCGTTCTAACACGTTCTTAG

mRNA sequence

ATGAGTTCCAGTAGCAGTCAAGGTAGTGGACGTTCTGGCCCTCCAGACGTACCCGAGGTTAATTCGCATCCTGAGGCGAATCCTCCCATTCCTCCCCCAGCGCCTCCTGTGCTGGCAGCAGAGGCATTGCAGGCGATGCTTGGTAATGCATTCCTAAACAACCTGCAGCACGTCGATGCATATGGAGCCCCTGCTCGTGGCGAGGATATGCAGTTTTTCAAGATCTTCATGAAGGCGAAGCCTCCTTCATTCGATGGGCATTTGGATAGTTCTGAAGCAGTGATAGAATGGACCGCCGCATTGGAAGCAATATTTCAATTTCTTGGAGCTAATGCTCAACAACGGGTCCAAGGAGCTGCCTTTATGCTCAAAGGCCACGCTCGCACTTGGTGGAAGGTTGTGGGTCAAACCGAGAACCGCCCAGAGAATCCCATTTCCTGGTCAGGGTTCAAAGGTCTTGTGCGAGACCATTTTGGCTGTCGTTTTGCTGATGTTGAGCAAGAAGCGGAGTTTGTCTCTCTTGTTCAAGGGACCTTGTCTGTGGAGCAGTACGTCAGAAGGTTCGAAGAGTTGTCCTGCCGAGTTCCGGGGTTGGTTGCCACCGAAGAGATTAGGACCAACCGATTCGTTAATGGGCTCCGCGCAGAAATTCGAGGTTTGGTCAGGCTTGGTCGACCAGCCACCTTTGCAGCAGCCCTAGCGAGCGCTCGGATGTTGGATAGGGACATCCCCAGGACGGATCAATCCCAAGAGGTTGGCACGTCATCTGGTGCCAAGAAAAAGCACGAAGTGGAAGTGTTTGCAACTAGTCAGAAGGTTAGAAGTTCTTCGTCGGATCTAGTGCGTGCGTTGAGGAGTTCTTGCCCTGTGTCACCGATGAGGAGCTCAAGGCGGAATATCCAGAGCTTTACGATGTCGATGATTCTGATGATGAAGATAGCTCCTAAGGTGGGGAGTCAGCGTACCCCTCGCTCAAGTTTAAGAGTCAAGGAAGTTAGCGTTCCAAGGATGGCCTTCAAAACCAAGGCTATCGTGGATGTACCTAGTAGGGCAGTAATAAGTCTCGTAGCCATTGCTGAGAAGGATGAATGCAACCGCGCCGCCGTCGCCTGCAGCCTCGCGCCTCCGCCCGCAACCGCGCCCTCGCGTCGCGCAGCAGCCGTCGCCGCGAGCTCCCGCCGTCGCCGCCGTCTCTCTCTCCAGCCGCAGGCAATCTCACCGCCGTCGCTCCTCCCCGTTTCCTCCTCGCCGCAGCCGTCGTCGTCGCTGTCCCTCGCCGGAAAACAAAGACCCAAGCGCCGTCGCTCTTTTTCCCCTCTTTTCCTTGCGTTTCAACAAGGCCGATCTAAGTGTTCCTTGGTTCGATTTGTTAGATCTCGCGCCCTAGCAGCTCGAAGCCTCAGTTCCTCGCGTTTTCTCTCTGTCCAGCATCAATTGGCGTTTTCGGCGTCGTTTAGCTATTTCGGTGCTGAATTTTCTGATCTGCAGCGCCGTAAAAGTGATCGATTGAGTTCGGATCACTTAAGCTCGAATACCCATTGCCCAAGGAGCGTTCTAACACGTTCTTAG

Coding sequence (CDS)

ATGAGTTCCAGTAGCAGTCAAGGTAGTGGACGTTCTGGCCCTCCAGACGTACCCGAGGTTAATTCGCATCCTGAGGCGAATCCTCCCATTCCTCCCCCAGCGCCTCCTGTGCTGGCAGCAGAGGCATTGCAGGCGATGCTTGGTAATGCATTCCTAAACAACCTGCAGCACGTCGATGCATATGGAGCCCCTGCTCGTGGCGAGGATATGCAGTTTTTCAAGATCTTCATGAAGGCGAAGCCTCCTTCATTCGATGGGCATTTGGATAGTTCTGAAGCAGTGATAGAATGGACCGCCGCATTGGAAGCAATATTTCAATTTCTTGGAGCTAATGCTCAACAACGGGTCCAAGGAGCTGCCTTTATGCTCAAAGGCCACGCTCGCACTTGGTGGAAGGTTGTGGGTCAAACCGAGAACCGCCCAGAGAATCCCATTTCCTGGTCAGGGTTCAAAGGTCTTGTGCGAGACCATTTTGGCTGTCGTTTTGCTGATGTTGAGCAAGAAGCGGAGTTTGTCTCTCTTGTTCAAGGGACCTTGTCTGTGGAGCAGTACGTCAGAAGGTTCGAAGAGTTGTCCTGCCGAGTTCCGGGGTTGGTTGCCACCGAAGAGATTAGGACCAACCGATTCGTTAATGGGCTCCGCGCAGAAATTCGAGGTTTGGTCAGGCTTGGTCGACCAGCCACCTTTGCAGCAGCCCTAGCGAGCGCTCGGATGTTGGATAGGGACATCCCCAGGACGGATCAATCCCAAGAGGTTGGCACGTCATCTGGTGCCAAGAAAAAGCACGAAGTGGAAGTGTTTGCAACTAGTCAGAAGGTTAGAAGTTCTTCGTCGGATCTAGTGCGTGCGTTGAGGAGTTCTTGCCCTGTGTCACCGATGAGGAGCTCAAGGCGGAATATCCAGAGCTTTACGATGTCGATGATTCTGATGATGAAGATAGCTCCTAAGGTGGGGAGTCAGCGTACCCCTCGCTCAAGTTTAAGAGTCAAGGAAGTTAGCGTTCCAAGGATGGCCTTCAAAACCAAGGCTATCGTGGATGTACCTAGTAGGGCAGTAATAAGTCTCGTAGCCATTGCTGAGAAGGATGAATGCAACCGCGCCGCCGTCGCCTGCAGCCTCGCGCCTCCGCCCGCAACCGCGCCCTCGCGTCGCGCAGCAGCCGTCGCCGCGAGCTCCCGCCGTCGCCGCCGTCTCTCTCTCCAGCCGCAGGCAATCTCACCGCCGTCGCTCCTCCCCGTTTCCTCCTCGCCGCAGCCGTCGTCGTCGCTGTCCCTCGCCGGAAAACAAAGACCCAAGCGCCGTCGCTCTTTTTCCCCTCTTTTCCTTGCGTTTCAACAAGGCCGATCTAAGTGTTCCTTGGTTCGATTTGTTAGATCTCGCGCCCTAGCAGCTCGAAGCCTCAGTTCCTCGCGTTTTCTCTCTGTCCAGCATCAATTGGCGTTTTCGGCGTCGTTTAGCTATTTCGGTGCTGAATTTTCTGATCTGCAGCGCCGTAAAAGTGATCGATTGAGTTCGGATCACTTAAGCTCGAATACCCATTGCCCAAGGAGCGTTCTAACACGTTCTTAG

Protein sequence

MSSSSSQGSGRSGPPDVPEVNSHPEANPPIPPPAPPVLAAEALQAMLGNAFLNNLQHVDAYGAPARGEDMQFFKIFMKAKPPSFDGHLDSSEAVIEWTAALEAIFQFLGANAQQRVQGAAFMLKGHARTWWKVVGQTENRPENPISWSGFKGLVRDHFGCRFADVEQEAEFVSLVQGTLSVEQYVRRFEELSCRVPGLVATEEIRTNRFVNGLRAEIRGLVRLGRPATFAAALASARMLDRDIPRTDQSQEVGTSSGAKKKHEVEVFATSQKVRSSSSDLVRALRSSCPVSPMRSSRRNIQSFTMSMILMMKIAPKVGSQRTPRSSLRVKEVSVPRMAFKTKAIVDVPSRAVISLVAIAEKDECNRAAVACSLAPPPATAPSRRAAAVAASSRRRRRLSLQPQAISPPSLLPVSSSPQPSSSLSLAGKQRPKRRRSFSPLFLAFQQGRSKCSLVRFVRSRALAARSLSSSRFLSVQHQLAFSASFSYFGAEFSDLQRRKSDRLSSDHLSSNTHCPRSVLTRS

Homology

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BLAST of Lag0027703 vs. NCBI nr
Match: XP_022156326.1 (uncharacterized protein LOC111023247 [Momordica charantia])

HSP 1 Score: 161.4 bits (407), Expect = 2.1e-35
Identity = 86/194 (44.33%), Postives = 118/194 (60.82%), Query Frame = 0


Query: 69  DMQFFKIFMKAKPPSFDGHLDSSEAVIEWTAALEAIFQFLGANAQQRVQGAAFMLKGHAR 128
           + +F K F +  PP+FDG  + + AV EW   LEA++ +LG   Q +V+GA FML+G A 
Sbjct: 37  EARFIKDFKRYGPPTFDGESERATAVEEWIRELEALYAYLGCEDQFKVKGAVFMLRGEAL 96

Query: 129 TWWKVVGQTENRPENPISWSGFKGLVRDHFGCRFADVEQEAEFVSLVQGTLSVEQYVRRF 188
            WW  V   E+    PI W+ FK L+ D++        +EAEF+ LVQGTLSV QY R+F
Sbjct: 97  NWWDSVAAAEDYANVPIPWARFKNLLYDYYYPETVKDMKEAEFLHLVQGTLSVAQYERKF 156

Query: 189 EELSCRVPGLVATEEIRTNRFVNGLRAEIRGLVRLGRPATFAAALASARMLDRDIP-RTD 248
            ELS     L+ TE ++  RFV GLR  IRG V L RP T+A A+  A ++D+D+  +  
Sbjct: 157 TELSRFALELIPTEALKIKRFVKGLRKGIRGPVDLQRPTTYAEAVRGALVMDKDVSNKAS 216

Query: 249 QSQEVGTSSGAKKK 262
              EVG+SSG K+K
Sbjct: 217 PLPEVGSSSGVKRK 230

[Close]

BLAST of Lag0027703 vs. NCBI nr
Match: XP_022156546.1 (uncharacterized protein LOC111023424 [Momordica charantia])

HSP 1 Score: 157.5 bits (397), Expect = 3.1e-34
Identity = 94/248 (37.90%), Postives = 130/248 (52.42%), Query Frame = 0


Query: 15  PDVPEVNSHPEANPPIPPPAPPVLAAEALQAMLGNAFLNNLQHVDAYGAPARGEDMQFFK 74
           P  P +       PP PP A   LA     A +G A     +H+    + A     QF K
Sbjct: 25  PPPPPIGDQAGVVPPFPPAAAQELALINNTAGVGGAQTQPPRHLHTPQSEA-----QFIK 84

Query: 75  IFMKAKPPSFDGHLDSSEAVIEWTAALEAIFQFLGANAQQRVQGAAFMLKGHARTWWKVV 134
            F +  PP+F G  + +    EW   LEA++ +LG   Q +V+GA FML+  A  WW  V
Sbjct: 85  DFKRYGPPTFGGGSERATLAEEWVRELEALYAYLGCEDQFKVKGAVFMLRSEALNWWDSV 144

Query: 135 GQTENRPENPISWSGFKGLVRDHFGCRFADVEQEAEFVSLVQGTLSVEQYVRRFEELSCR 194
             TE+    P+ W+ FK L+ DH+     +  +E EF+ LVQGTL+V QY R+F ELS  
Sbjct: 145 AATEDHANVPVPWARFKNLLYDHYYRETVEDMKEVEFLHLVQGTLTVAQYERKFTELSSF 204

Query: 195 VPGLVATEEIRTNRFVNGLRAEIRGLVRLGRPATFAAALASARMLDRDIP-RTDQSQEVG 254
              L+ TE ++  RFV GL   IRG V L RP T+A A+    ++D+D+  R     EVG
Sbjct: 205 ALELIPTEAMKIKRFVKGLHKGIRGSVDLQRPVTYAEAVRGTLIMDKDVSNRVQPLVEVG 264

Query: 255 TSSGAKKK 262
           +S G K+K
Sbjct: 265 SSLGVKRK 267

[Close]

BLAST of Lag0027703 vs. NCBI nr
Match: XP_022157413.1 (uncharacterized protein LOC111024114 [Momordica charantia])

HSP 1 Score: 156.8 bits (395), Expect = 5.2e-34
Identity = 100/284 (35.21%), Postives = 160/284 (56.34%), Query Frame = 0


Query: 10  GRSGPPDVPEVNSHPEANPPIPPPAPPVLAAEALQAMLGNA-FLNNLQHVDAYGAPARGE 69
           GR  PP VP+  + P+  P + P     L AEALQ +L NA      Q      A    +
Sbjct: 33  GRVAPP-VPQ--AAPQGVPQVNPQV--ALLAEALQVLLDNANGAGGAQVQQPRRAQIPQD 92

Query: 70  DMQFFKIFMKAKPPSFDGHLDSSEAVIEWTAALEAIFQFLGANAQQRVQGAAFMLKGHAR 129
           ++QF + F +  PP F+G  +   A  EW   LEA++ +LG +   +V+GA FML+G A 
Sbjct: 93  EVQFIRDFKRFGPPVFNGVSERPTATEEWVRELEALYVYLGCSDDFKVRGAVFMLRGEAV 152

Query: 130 TWWKVVGQTENRPENPISWSGFKGLVRDHFGCRFADVEQEAEFVSLVQGTLSVEQYVRRF 189
            WW+ V   E+    P++W+ FK L+ +++       E+ AEF+ L QG+L+V QY R+F
Sbjct: 153 NWWESVAAAEDHTNVPVTWARFKDLLYEYYFPVTVRNEKRAEFLRLTQGSLTVAQYERKF 212

Query: 190 EELSCRVPGLVATEEIRTNRFVNGLRAEIRGLVRLGRPATFAAALASARMLDRDIPRTDQ 249
            ELS      + TE+++ ++F++GLR EI+GL+ +  P T+AAA+  A ++D+ +     
Sbjct: 213 TELSRFGMQYIPTEQLKIDKFIDGLRMEIKGLLVVKEPTTYAAAIRCALVMDKCLEEPQS 272

Query: 250 SQEVGTSSGAKKKHEVEVFATSQKVRSSSSDLVRALRSSCPVSP 293
            Q +G+SSG K+K    +F++SQ  R     + R  +++ PV P
Sbjct: 273 QQVMGSSSGVKRK--FALFSSSQSSRGHQHHVQR--QTAPPVCP 307

[Close]

BLAST of Lag0027703 vs. NCBI nr
Match: XP_022156328.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111023249 [Momordica charantia])

HSP 1 Score: 156.0 bits (393), Expect = 8.9e-34
Identity = 96/272 (35.29%), Postives = 147/272 (54.04%), Query Frame = 0


Query: 28  PPIPPPAPP---------VLAAEALQAMLGNA-FLNNLQHVDAYGAPARGEDMQFFKIFM 87
           PP+P  AP           L AEALQ +L NA      Q      A    +++QF + F 
Sbjct: 37  PPVPQAAPQGVPQVNPQVALLAEALQVLLHNANGAGGAQVQQPRRAQIPQDEVQFIRDFK 96

Query: 88  KAKPPSFDGHLDSSEAVIEWTAALEAIFQFLGANAQQRVQGAAFMLKGHARTWWKVVGQT 147
              PP F+G  +   A  EW   LEA++ +LG +   +V+GA FML+G A  WW+ V   
Sbjct: 97  CFGPPVFNGVSERPTAAEEWVRELEALYVYLGCSDDFKVRGAVFMLRGEAVNWWESVAAA 156

Query: 148 ENRPENPISWSGFKGLVRDHFGCRFADVEQEAEFVSLVQGTLSVEQYVRRFEELSCRVPG 207
           E+    P++W+ FK L+ +++    A  E+  EF+ L QG+L+V QY R+F ELS     
Sbjct: 157 EDHANVPVTWARFKDLLYEYYFPVIARNEKRVEFLRLTQGSLTVAQYERKFTELSRFGTQ 216

Query: 208 LVATEEIRTNRFVNGLRAEIRGLVRLGRPATFAAALASARMLDRDIPRTDQSQEVGTSSG 267
            V TE+++ ++F++GLR EI+GL+ L  P T+AAA+  A ++D+ +      Q +G++SG
Sbjct: 217 YVPTEQLKIDKFIDGLRREIKGLLVLKEPTTYAAAVRCALVMDKCLEEPQSQQVIGSNSG 276

Query: 268 AKKKHEVEVFATSQKVRSSSSDLVRALRSSCP 290
            K+K     FA+    +SS      A R + P
Sbjct: 277 VKRK-----FASFSASQSSRGHQHHAQRQTAP 303

[Close]

BLAST of Lag0027703 vs. NCBI nr
Match: XP_022155925.1 (uncharacterized protein LOC111022925 [Momordica charantia])

HSP 1 Score: 154.5 bits (389), Expect = 2.6e-33
Identity = 96/263 (36.50%), Postives = 147/263 (55.89%), Query Frame = 0


Query: 18  PEVNSHPEANPPIPP--PAPPVLAAEALQAMLGNAFLNNLQHVDAYGAPARG----EDMQ 77
           P       A+  +PP  P   VL AEALQ +L NA   N         P+RG    E++Q
Sbjct: 15  PNCRGEGAADLNVPPVVPGRVVLLAEALQVLLDNA---NGAGGAQVQQPSRGQISQEEVQ 74

Query: 78  FFKIFMKAKPPSFDGHLDSSEAVIEWTAALEAIFQFLGANAQQRVQGAAFMLKGHARTWW 137
           F + F +  PP F+G  +   A  EW   LEA++ +LG +   +V+GA FML+G A  WW
Sbjct: 75  FIRDFKRFGPPVFNGVSERPTAAEEWVRELEALYVYLGCSDDFKVRGAVFMLQGEAVNWW 134

Query: 138 KVVGQTENRPENPISWSGFKGLVRDHFGCRFADVEQEAEFVSLVQGTLSVEQYVRRFEEL 197
           + V   E+    P++W+ FK L+ +++       E+ AEF+ L Q +L V QY R+F EL
Sbjct: 135 ESVAAAEDHANVPVTWARFKDLLYEYYFPVTVRNEKRAEFLRLTQESLIVAQYERKFTEL 194

Query: 198 SCRVPGLVATEEIRTNRFVNGLRAEIRGLVRLGRPATFAAALASARMLDRDIPRTDQSQE 257
           S      + TE+++ ++F++GLR EI+GL+ L  P T+AAA+  A ++D+ +      Q 
Sbjct: 195 SRFGMQYIPTEQLKIDKFIDGLRREIKGLLVLKEPTTYAAAVRCALVMDKCLEEPQSQQV 254

Query: 258 VGTSSGAKKKHEVEVFATSQKVR 275
           +G+SSG K+K     F++SQ  R
Sbjct: 255 IGSSSGVKRK--FASFSSSQPSR 272

[Close]

BLAST of Lag0027703 vs. ExPASy TrEMBL
Match: A0A6J1DUM2 (uncharacterized protein LOC111023247 OS=Momordica charantia OX=3673 GN=LOC111023247 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-35
Identity = 86/194 (44.33%), Postives = 118/194 (60.82%), Query Frame = 0


Query: 69  DMQFFKIFMKAKPPSFDGHLDSSEAVIEWTAALEAIFQFLGANAQQRVQGAAFMLKGHAR 128
           + +F K F +  PP+FDG  + + AV EW   LEA++ +LG   Q +V+GA FML+G A 
Sbjct: 37  EARFIKDFKRYGPPTFDGESERATAVEEWIRELEALYAYLGCEDQFKVKGAVFMLRGEAL 96

Query: 129 TWWKVVGQTENRPENPISWSGFKGLVRDHFGCRFADVEQEAEFVSLVQGTLSVEQYVRRF 188
            WW  V   E+    PI W+ FK L+ D++        +EAEF+ LVQGTLSV QY R+F
Sbjct: 97  NWWDSVAAAEDYANVPIPWARFKNLLYDYYYPETVKDMKEAEFLHLVQGTLSVAQYERKF 156

Query: 189 EELSCRVPGLVATEEIRTNRFVNGLRAEIRGLVRLGRPATFAAALASARMLDRDIP-RTD 248
            ELS     L+ TE ++  RFV GLR  IRG V L RP T+A A+  A ++D+D+  +  
Sbjct: 157 TELSRFALELIPTEALKIKRFVKGLRKGIRGPVDLQRPTTYAEAVRGALVMDKDVSNKAS 216

Query: 249 QSQEVGTSSGAKKK 262
              EVG+SSG K+K
Sbjct: 217 PLPEVGSSSGVKRK 230

[Close]

BLAST of Lag0027703 vs. ExPASy TrEMBL
Match: A0A6J1DVA0 (uncharacterized protein LOC111023424 OS=Momordica charantia OX=3673 GN=LOC111023424 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.5e-34
Identity = 94/248 (37.90%), Postives = 130/248 (52.42%), Query Frame = 0


Query: 15  PDVPEVNSHPEANPPIPPPAPPVLAAEALQAMLGNAFLNNLQHVDAYGAPARGEDMQFFK 74
           P  P +       PP PP A   LA     A +G A     +H+    + A     QF K
Sbjct: 25  PPPPPIGDQAGVVPPFPPAAAQELALINNTAGVGGAQTQPPRHLHTPQSEA-----QFIK 84

Query: 75  IFMKAKPPSFDGHLDSSEAVIEWTAALEAIFQFLGANAQQRVQGAAFMLKGHARTWWKVV 134
            F +  PP+F G  + +    EW   LEA++ +LG   Q +V+GA FML+  A  WW  V
Sbjct: 85  DFKRYGPPTFGGGSERATLAEEWVRELEALYAYLGCEDQFKVKGAVFMLRSEALNWWDSV 144

Query: 135 GQTENRPENPISWSGFKGLVRDHFGCRFADVEQEAEFVSLVQGTLSVEQYVRRFEELSCR 194
             TE+    P+ W+ FK L+ DH+     +  +E EF+ LVQGTL+V QY R+F ELS  
Sbjct: 145 AATEDHANVPVPWARFKNLLYDHYYRETVEDMKEVEFLHLVQGTLTVAQYERKFTELSSF 204

Query: 195 VPGLVATEEIRTNRFVNGLRAEIRGLVRLGRPATFAAALASARMLDRDIP-RTDQSQEVG 254
              L+ TE ++  RFV GL   IRG V L RP T+A A+    ++D+D+  R     EVG
Sbjct: 205 ALELIPTEAMKIKRFVKGLHKGIRGSVDLQRPVTYAEAVRGTLIMDKDVSNRVQPLVEVG 264

Query: 255 TSSGAKKK 262
           +S G K+K
Sbjct: 265 SSLGVKRK 267

[Close]

BLAST of Lag0027703 vs. ExPASy TrEMBL
Match: A0A6J1DTA8 (uncharacterized protein LOC111024114 OS=Momordica charantia OX=3673 GN=LOC111024114 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.5e-34
Identity = 100/284 (35.21%), Postives = 160/284 (56.34%), Query Frame = 0


Query: 10  GRSGPPDVPEVNSHPEANPPIPPPAPPVLAAEALQAMLGNA-FLNNLQHVDAYGAPARGE 69
           GR  PP VP+  + P+  P + P     L AEALQ +L NA      Q      A    +
Sbjct: 33  GRVAPP-VPQ--AAPQGVPQVNPQV--ALLAEALQVLLDNANGAGGAQVQQPRRAQIPQD 92

Query: 70  DMQFFKIFMKAKPPSFDGHLDSSEAVIEWTAALEAIFQFLGANAQQRVQGAAFMLKGHAR 129
           ++QF + F +  PP F+G  +   A  EW   LEA++ +LG +   +V+GA FML+G A 
Sbjct: 93  EVQFIRDFKRFGPPVFNGVSERPTATEEWVRELEALYVYLGCSDDFKVRGAVFMLRGEAV 152

Query: 130 TWWKVVGQTENRPENPISWSGFKGLVRDHFGCRFADVEQEAEFVSLVQGTLSVEQYVRRF 189
            WW+ V   E+    P++W+ FK L+ +++       E+ AEF+ L QG+L+V QY R+F
Sbjct: 153 NWWESVAAAEDHTNVPVTWARFKDLLYEYYFPVTVRNEKRAEFLRLTQGSLTVAQYERKF 212

Query: 190 EELSCRVPGLVATEEIRTNRFVNGLRAEIRGLVRLGRPATFAAALASARMLDRDIPRTDQ 249
            ELS      + TE+++ ++F++GLR EI+GL+ +  P T+AAA+  A ++D+ +     
Sbjct: 213 TELSRFGMQYIPTEQLKIDKFIDGLRMEIKGLLVVKEPTTYAAAIRCALVMDKCLEEPQS 272

Query: 250 SQEVGTSSGAKKKHEVEVFATSQKVRSSSSDLVRALRSSCPVSP 293
            Q +G+SSG K+K    +F++SQ  R     + R  +++ PV P
Sbjct: 273 QQVMGSSSGVKRK--FALFSSSQSSRGHQHHVQR--QTAPPVCP 307

[Close]

BLAST of Lag0027703 vs. ExPASy TrEMBL
Match: A0A6J1DQB9 (Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111023249 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.3e-34
Identity = 96/272 (35.29%), Postives = 147/272 (54.04%), Query Frame = 0


Query: 28  PPIPPPAPP---------VLAAEALQAMLGNA-FLNNLQHVDAYGAPARGEDMQFFKIFM 87
           PP+P  AP           L AEALQ +L NA      Q      A    +++QF + F 
Sbjct: 37  PPVPQAAPQGVPQVNPQVALLAEALQVLLHNANGAGGAQVQQPRRAQIPQDEVQFIRDFK 96

Query: 88  KAKPPSFDGHLDSSEAVIEWTAALEAIFQFLGANAQQRVQGAAFMLKGHARTWWKVVGQT 147
              PP F+G  +   A  EW   LEA++ +LG +   +V+GA FML+G A  WW+ V   
Sbjct: 97  CFGPPVFNGVSERPTAAEEWVRELEALYVYLGCSDDFKVRGAVFMLRGEAVNWWESVAAA 156

Query: 148 ENRPENPISWSGFKGLVRDHFGCRFADVEQEAEFVSLVQGTLSVEQYVRRFEELSCRVPG 207
           E+    P++W+ FK L+ +++    A  E+  EF+ L QG+L+V QY R+F ELS     
Sbjct: 157 EDHANVPVTWARFKDLLYEYYFPVIARNEKRVEFLRLTQGSLTVAQYERKFTELSRFGTQ 216

Query: 208 LVATEEIRTNRFVNGLRAEIRGLVRLGRPATFAAALASARMLDRDIPRTDQSQEVGTSSG 267
            V TE+++ ++F++GLR EI+GL+ L  P T+AAA+  A ++D+ +      Q +G++SG
Sbjct: 217 YVPTEQLKIDKFIDGLRREIKGLLVLKEPTTYAAAVRCALVMDKCLEEPQSQQVIGSNSG 276

Query: 268 AKKKHEVEVFATSQKVRSSSSDLVRALRSSCP 290
            K+K     FA+    +SS      A R + P
Sbjct: 277 VKRK-----FASFSASQSSRGHQHHAQRQTAP 303

[Close]

BLAST of Lag0027703 vs. ExPASy TrEMBL
Match: A0A6J1DCW8 (uncharacterized protein LOC111019603 OS=Momordica charantia OX=3673 GN=LOC111019603 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.3e-33
Identity = 91/245 (37.14%), Postives = 136/245 (55.51%), Query Frame = 0


Query: 34  APPVLAAEALQAMLGNAF-LNNLQHVDAYGAPARGEDMQFFKIFMKAKPPSFDGHLDSSE 93
           A   L   ALQA++ N+      Q +    A A   + QF + F +  PP+F+G  + + 
Sbjct: 27  AKVALLGRALQALIDNSIAAGAAQALQPRQALALQSEAQFIRDFRRYGPPTFNGESEKAT 86

Query: 94  AVIEWTAALEAIFQFLGANAQQRVQGAAFMLKGHARTWWKVVGQTENRPENPISWSGFKG 153
            V EW   LEA++ +LG + Q +V+GA FML+G A  WW VV   E+    PI+W+  K 
Sbjct: 87  VVEEWIRELEALYTYLGCSDQLKVKGAVFMLRGEALNWWDVVATVEDHTNEPITWTTSKD 146

Query: 154 LVRDHFGCRFADVEQEAEFVSLVQGTLSVEQYVRRFEELSCRVPGLVATEEIRTNRFVNG 213
           L+ D++  +    E+E EF+ L Q TL V QY ++F E S     L+ TE  +  RFV G
Sbjct: 147 LLYDYYFPKTIKDEKEIEFLHLTQRTLMVAQYEKKFTEFSRFALDLIPTEARKIKRFVRG 206

Query: 214 LRAEIRGLVRLGRPATFAAALASARMLDRD-IPRTDQSQEVGTSSGAKKKHEVEVFATSQ 273
           L   I+G + L RP T+A A+  A ++D+D I +    Q+VG SSG K+K  V   ++SQ
Sbjct: 207 LWKGIKGPIDLQRPTTYAEAIKGALVMDKDVIEKAQPQQKVGLSSGVKRK--VPPISSSQ 266

Query: 274 KVRSS 277
             ++S
Sbjct: 267 PSKTS 269

The following BLAST results are available for this feature:

BLAST of Lag0027703 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156326.1	2.1e-35	44.33	uncharacterized protein LOC111023247 [Momordica charantia]	[more]
XP_022156546.1	3.1e-34	37.90	uncharacterized protein LOC111023424 [Momordica charantia]	[more]
XP_022157413.1	5.2e-34	35.21	uncharacterized protein LOC111024114 [Momordica charantia]	[more]
XP_022156328.1	8.9e-34	35.29	LOW QUALITY PROTEIN: uncharacterized protein LOC111023249 [Momordica charantia]	[more]
XP_022155925.1	2.6e-33	36.50	uncharacterized protein LOC111022925 [Momordica charantia]	[more]

BLAST of Lag0027703 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0027703 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DUM2	1.0e-35	44.33	uncharacterized protein LOC111023247 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DVA0	1.5e-34	37.90	uncharacterized protein LOC111023424 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DTA8	2.5e-34	35.21	uncharacterized protein LOC111024114 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DQB9	4.3e-34	35.29	Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111023249 PE=4 SV=1	[more]
A0A6J1DCW8	1.3e-33	37.14	uncharacterized protein LOC111019603 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]

BLAST of Lag0027703 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 119..214 e-value: 3.7E-15 score: 56.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 396..427
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 507..522
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 502..522
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 373..431
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..35
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 76..292
None	No IPR available	PANTHER	PTHR34482:SF4	POLYMERASES SUPERFAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED	coord: 76..292

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0027703.1	Lag0027703.1	mRNA