Lag0027689 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0027689
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr8: 3541211 .. 3541795 (+)
RNA-Seq Expression	Lag0027689
Synteny	Lag0027689

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCCAAGAAAGCTGCTTCCAAGACTTCAAGCGACTCATACGTGGGACCAATTACTCGCGAACGCTCCAAAGAAATTCAAAAGTTAGAAGAAGAACAAGCCTCTGTCATTGCAAATATGATATGGAACCAGATGGCAGATCCAAATCAAGGCGGAATGATCATCCAAGAAAATCCTTTATTTGGCTATTCTACTTCATCTTCTGAGCAAGCAAAGGAGATATCAGATCCTGACGTGATGTCTTTAATGATGGCTGACATAGGTACAGGCGAAGAAAGAATGGCTGAACTGGAAAGGAAAGTCAACATGCTGATGAAGGCGGTTGAAGAGAGAGATTGTGAAATTGCCTCTCTAAAAAATCACATTGAAAGTCGTGATATTGCTGAATCAAGCCAAACACCTGCTGCAAAGAATAATGACAAAGGGAAGGCTGTCATACAAGAAAACCAGCCTCAGCATTCCACTTCAATTGCTTCCCTGTCTGTTCAACAACTCCAAGATATGATTATGAGCTCCATTAGAGCTCAATATGGTGGACCTATGATGTGGACTTTTCCTACCGCAAGCGCACGGGTCAAGTAA

mRNA sequence

ATGGCATCCAAGAAAGCTGCTTCCAAGACTTCAAGCGACTCATACGTGGGACCAATTACTCGCGAACGCTCCAAAGAAATTCAAAAGTTAGAAGAAGAACAAGCCTCTGTCATTGCAAATATGATATGGAACCAGATGGCAGATCCAAATCAAGGCGGAATGATCATCCAAGAAAATCCTTTATTTGGCTATTCTACTTCATCTTCTGAGCAAGCAAAGGAGATATCAGATCCTGACGTGATGTCTTTAATGATGGCTGACATAGGTACAGGCGAAGAAAGAATGGCTGAACTGGAAAGGAAAGTCAACATGCTGATGAAGGCGGTTGAAGAGAGAGATTGTGAAATTGCCTCTCTAAAAAATCACATTGAAAGTCGTGATATTGCTGAATCAAGCCAAACACCTGCTGCAAAGAATAATGACAAAGGGAAGGCTGTCATACAAGAAAACCAGCCTCAGCATTCCACTTCAATTGCTTCCCTGTCTGTTCAACAACTCCAAGATATGATTATGAGCTCCATTAGAGCTCAATATGGTGGACCTATGATGTGGACTTTTCCTACCGCAAGCGCACGGGTCAAGTAA

Coding sequence (CDS)

ATGGCATCCAAGAAAGCTGCTTCCAAGACTTCAAGCGACTCATACGTGGGACCAATTACTCGCGAACGCTCCAAAGAAATTCAAAAGTTAGAAGAAGAACAAGCCTCTGTCATTGCAAATATGATATGGAACCAGATGGCAGATCCAAATCAAGGCGGAATGATCATCCAAGAAAATCCTTTATTTGGCTATTCTACTTCATCTTCTGAGCAAGCAAAGGAGATATCAGATCCTGACGTGATGTCTTTAATGATGGCTGACATAGGTACAGGCGAAGAAAGAATGGCTGAACTGGAAAGGAAAGTCAACATGCTGATGAAGGCGGTTGAAGAGAGAGATTGTGAAATTGCCTCTCTAAAAAATCACATTGAAAGTCGTGATATTGCTGAATCAAGCCAAACACCTGCTGCAAAGAATAATGACAAAGGGAAGGCTGTCATACAAGAAAACCAGCCTCAGCATTCCACTTCAATTGCTTCCCTGTCTGTTCAACAACTCCAAGATATGATTATGAGCTCCATTAGAGCTCAATATGGTGGACCTATGATGTGGACTTTTCCTACCGCAAGCGCACGGGTCAAGTAA

Protein sequence

MASKKAASKTSSDSYVGPITRERSKEIQKLEEEQASVIANMIWNQMADPNQGGMIIQENPLFGYSTSSSEQAKEISDPDVMSLMMADIGTGEERMAELERKVNMLMKAVEERDCEIASLKNHIESRDIAESSQTPAAKNNDKGKAVIQENQPQHSTSIASLSVQQLQDMIMSSIRAQYGGPMMWTFPTASARVK

Homology

[Close]

BLAST of Lag0027689 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 188.3 bits (477), Expect = 6.0e-44
Identity = 106/182 (58.24%), Postives = 135/182 (74.18%), Query Frame = 0


Query: 1   MASKKAASKTSSDSYVGPITRERSKEIQKLEEEQASVIANMIWNQMADPNQGGMIIQENP 60
           M S+   SK  SD    P TR RS+EIQ  E+     +A  IW Q++ P +GG++I+ENP
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFDVAKNIWEQISKPPKGGIVIKENP 60

Query: 61  LFGYSTSSSEQA-KEISDPDVMSLMMADIGTGEERMAELERKVNMLMKAVEERDCEIASL 120
                 S SE++ +E+  P++MS+M+ D+ T E+RMAELE+KVNMLMKAVEERD EIA L
Sbjct: 61  AMDEHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALL 120

Query: 121 KNHIESRDIAESSQTPAAKNNDKGKAVIQENQPQHSTSIASLSVQQLQDMIMSSIRAQYG 180
           KNHIESRD AESS T   KN +KGKA++QE+QPQ+STSIASLSVQQLQ+MI +SI+ QYG
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNSTSIASLSVQQLQEMIANSIKTQYG 180

Query: 181 GP 182
           GP
Sbjct: 181 GP 182

[Close]

BLAST of Lag0027689 vs. NCBI nr
Match: KAA0061113.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 188.0 bits (476), Expect = 7.9e-44
Identity = 114/197 (57.87%), Postives = 145/197 (73.60%), Query Frame = 0


Query: 1   MASKKAASKTS--SDSYVGPITRERSKEIQKLEEEQASVIANMIWNQMADPNQGGMIIQE 60
           MASKKAAS +S  S++Y GPITR RSK I + E++Q S +A  I  Q+ +  + G++I+E
Sbjct: 1   MASKKAASNSSVASNAYTGPITRSRSKGITQ-EQDQGSNVAQSILKQLMESLKAGIVIKE 60

Query: 61  NPLFGYSTSSSEQAKEISDPDVMSLMMADIGTGEERMAELERKVNMLMKAVEERDCEIAS 120
           NPL+  S SSS ++K+ + PDVMS+MMADI T E  MAE+ERK+N LMKAVEERD EI +
Sbjct: 61  NPLYDNSDSSSSKSKKETHPDVMSVMMADI-TPEAAMAEMERKINFLMKAVEERDHEIIA 120

Query: 121 LKNHIESRDIAESSQTPAAKNNDKGKAVIQENQP-QHSTSIASLSVQQLQDMIMSSIRAQ 180
           L+  + +R+ AESSQTP  K  DKGK V+QENQP Q S S+ASLSVQQLQDMI +SIRAQ
Sbjct: 121 LREQMRTRETAESSQTPIVKATDKGKNVVQENQPQQQSVSVASLSVQQLQDMIANSIRAQ 180

Query: 181 YGGPMMWTFPTASARVK 195
           YGGP   TF  + +  K
Sbjct: 181 YGGPPQTTFMYSKSYTK 195

[Close]

BLAST of Lag0027689 vs. NCBI nr
Match: KAA0034095.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 186.8 bits (473), Expect = 1.8e-43
Identity = 105/182 (57.69%), Postives = 134/182 (73.63%), Query Frame = 0


Query: 1   MASKKAASKTSSDSYVGPITRERSKEIQKLEEEQASVIANMIWNQMADPNQGGMIIQENP 60
           M S+   SK  SD    P TR RS+EIQ  E+     +A  IW Q++ P +GG++I+ENP
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENP 60

Query: 61  LFG-YSTSSSEQAKEISDPDVMSLMMADIGTGEERMAELERKVNMLMKAVEERDCEIASL 120
               Y++ S    +E+  P++MS+M+ D+ T E+RMAELE+KVNMLMKAVEERD EIA L
Sbjct: 61  AIDEYNSLSECSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALL 120

Query: 121 KNHIESRDIAESSQTPAAKNNDKGKAVIQENQPQHSTSIASLSVQQLQDMIMSSIRAQYG 180
           KNHIESRD AESS T   KN +KGKA++QE+QPQ+STSIASLSVQQLQ+MI +SI+ QYG
Sbjct: 121 KNHIESRDAAESSHTHTMKNANKGKAIMQESQPQNSTSIASLSVQQLQEMIANSIKTQYG 180

Query: 181 GP 182
           GP
Sbjct: 181 GP 182

[Close]

BLAST of Lag0027689 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 2.3e-43
Identity = 114/190 (60.00%), Postives = 144/190 (75.79%), Query Frame = 0


Query: 1   MASKKAASKTS--SDSYVGPITRERSKEIQKLEEEQASVIANMIWNQMADPNQGGMIIQE 60
           MASKKAASK+S  SD+Y GPITR RSK I +  ++Q S IA  I  Q+ +  + G++I+E
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGIIQ-GQDQGSAIAQSILKQLMESPKAGIVIKE 60

Query: 61  NPLFG-YSTSSSEQAKEISDPDVMSLMMADIGTGEERMAELERKVNMLMKAVEERDCEIA 120
           NPL+  Y ++SS   KE + PDVMS+MMAD+   E  MAE+ERK+N+LMK V+ERD EIA
Sbjct: 61  NPLYNDYDSASSRSLKE-AHPDVMSVMMADVAV-ETAMAEMERKINLLMKVVDERDHEIA 120

Query: 121 SLKNHIESRDIAESSQTPAAKNNDKGKAVIQENQP-QHSTSIASLSVQQLQDMIMSSIRA 180
           +LK  +++R+ AESSQTP  K +DKGK V+QENQP Q STS+ASLSVQQLQDMI SSIRA
Sbjct: 121 ALKEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITSSIRA 180

Query: 181 QYGGPMMWTF 187
           QYGGP   +F
Sbjct: 181 QYGGPSQTSF 187

[Close]

BLAST of Lag0027689 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 2.3e-43
Identity = 114/190 (60.00%), Postives = 144/190 (75.79%), Query Frame = 0


Query: 1   MASKKAASKTS--SDSYVGPITRERSKEIQKLEEEQASVIANMIWNQMADPNQGGMIIQE 60
           MASKKAASK+S  SD+Y GPITR RSK I +  ++Q S IA  I  Q+ +  + G++I+E
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGIIQ-GQDQGSAIAQSILKQLMESPKAGIVIKE 60

Query: 61  NPLFG-YSTSSSEQAKEISDPDVMSLMMADIGTGEERMAELERKVNMLMKAVEERDCEIA 120
           NPL+  Y ++SS   KE + PDVMS+MMAD+   E  MAE+ERK+N+LMK V+ERD EIA
Sbjct: 61  NPLYNDYDSASSRSLKE-AHPDVMSVMMADVAV-ETAMAEMERKINLLMKVVDERDHEIA 120

Query: 121 SLKNHIESRDIAESSQTPAAKNNDKGKAVIQENQP-QHSTSIASLSVQQLQDMIMSSIRA 180
           +LK  +++R+ AESSQTP  K +DKGK V+QENQP Q STS+ASLSVQQLQDMI SSIRA
Sbjct: 121 ALKEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITSSIRA 180

Query: 181 QYGGPMMWTF 187
           QYGGP   +F
Sbjct: 181 QYGGPSQTSF 187

The following BLAST results are available for this feature:

BLAST of Lag0027689 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047477.1	6.0e-44	58.24	uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]	[more]
KAA0061113.1	7.9e-44	57.87	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gyp...	[more]
KAA0034095.1	1.8e-43	57.69	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_031739134.1	2.3e-43	60.00	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]
XP_031742032.1	2.3e-43	60.00	uncharacterized protein LOC116404025 [Cucumis sativus]	[more]

BLAST of Lag0027689 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 95..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0027689.1	Lag0027689.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0003676	nucleic acid binding