Lag0027684 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0027684
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	chr8: 3477697 .. 3480131 (-)
RNA-Seq Expression	Lag0027684
Synteny	Lag0027684

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGGTTGCCTGCTCTCCCTCTTTCCTCTAACACTTCGTCCTCTCTTACCACACCTATTGCTCCACAGAGACCCACCCTAATACTTCAATCCCCATTTCTTCTCCTATTACTCTCCCTCTAAACTCGGTGATTCCCCCTTTTCGCCCTCAACAAGCCCCTTCAAATCCTTCAATCCCTGCTAGTTTCCCTTACCCTCCAGCACCACAGTCCGGCTTACCATTTTATTCGGGGTTTAATTCCGCCACCCCTGTTTTTCCCACAGCTCCTACACCCTCCTTATCTCCATATCCAATCTTAACCCCTCCCTTGAATGTCAAGCTCACCAACTCCAACTACCTCTTATGGAAGAATCAGTTGCTGAATCACATAATTGCGTTCGATATGGAGAGTTTCATCGATGGTACCCCTGTGCCTATGCGGTTTCTTGACTCTGCTCAAACTCAAGTAAATCCTCATTTCCTTGTATGGCAAACATTTAATCGAACCCTTATGAGCTGGATATACTCCTCTCTGAATGAAGATAAATTAGGAGAAGTTATTGGCTGCTCTTCGGCCTATGAAATTTGGGAACACCTTCGAGTAGTCTATGAGTCGTCGTCCACAGTTAGATTATGGGTTTAATATGGTATTAGAGCCCATTAAACCCAAACGGGTATTCGGTCCAATAAAAATAAATTGGAATCCGATTCAAGAATGGTGAACCCAAAGAGGCACCATCTTGAGGGGGCATGTTGAGGATCCTACATTGAAAAGATTGGTGGAGACCTCACAATATATAAGCTACAGGGGTTATTCTGTGGTATCTTTCTATCTATTTCTTTAAGATCTAATTGAGTGCAATGGGAGGATGATAGGGAAAGAAAAGAGAAGGAAGAAAGATAAATATCTTATCTTTTTAATATTCTTCCAATAAATTTATGTATGTATGGTATATAGTTTTAATTTGGTTCTTATCGTTTCAAAAATATTCATTTAGTCCCTATAGTATAGGTTTAGTTTCAATTTGGAAGTTTTCAATTCAGTCTCAATGGTTTAGTAAACCTCATAAATCATTCATGTCTTTATAATACAAATTTTTACATCATAAAGATATAGTTGCAGGGATTAAAGCCCTAGCGCAGCGGAAACGATCAGAGAACCTTATCAGCTTGAAAATCGATCGGGAAACCAATACGACAGCAAAAATAAGAAATATTTACAGCAAGCAATATGATAAAGAAACATGCTGTAAAACTGATAAAACATGCTGAAAAAACTAAGAAGAAGTTCTAGATCTAATCTAGAAAAGGATCCTATTGATCCTAGTTCAAGAACAAATTACCTTTGAAGAAACCCTTGATTGTTTCGCCAAATTTTCTCTGAATTGCTCCCAAAAACAGCAGCAAACGAACCTTGTCTTCGTTGGAAAAACAGCACGAACACCACCACGAGGATTCACCGGTATTCTCGAACAGGATCTTACGTTGGACGCTTGTGGGAGCAAAAACTCTAAGGATTTTTCCTGGAAGAAGAACTCTGTATTCTCAGAGAGAGTGCAGAACGAGAGAGAGGATGAGAGGGAGCGTGAGAGGCGTGAGACTTGGGCTATTCTGCAACTGAATGAAGACCAAGATAATAAAGGAATAGTTAAGCCACCTCACGCATCATCAGGTAACTGAATAGTCAGTTACCTGATTTTAATTAATTACAAATTAAAAAATAAATTGTAATTAATTAAATTTAATTAATCAATATTAATTAAATCAATATTAATTTAAATCCTATTTAAACTAATATCCCTCTTTAACCTATAGTTCAATTAAATCAAATTTAATTAAACTAAATCAATTAATTAATTCAAAATTAATTAATATAAAAAAATAAAATAATAAAATTGAACATCACATATTCAATTATTATTTTCTCTCTCAAAACTATAGTATTAATATACATCCAATGCATATTAATTATAACCTATAGTTTTAATATGAATCAAATTCATATTTTAGTTTATTATTCGAACACCTTCGAATATTCAATCCATCCTTAGAATTTTACCTCAACGCCCTAAATGAGCTACCGGTGGACCTAATGGACCTACAGATCAGAAGCTCCAACGATATGAGATTAGTTGGCTAAACCCATTAACCAAGTTAATCAATATTCGTTAACTGTGGTTCACTCCACTAAAGAACCACAACTGCACTCTTCTCACTACAGATATATTTCTGTGTCCACGGATATTGACCGTCAACAGCAAGTTAGCCCTTCACGTGTGTTCGTACCCCAGCTAGGTCAAATTACCGTTTTACCCCTGGGCTACCTCTTGGTCCTTAAGTACCAGTGCTCCTCTAATGAACAACCTGTTTGTGGTCCAACCAGCAAACAGAAATCCCTCTCGTGCCATAAAGAGGGTAGGGCCCATTGTTCAAGACCCGGAGACACCACTTAA

mRNA sequence

ATGACAGAGACCCACCCTAATACTTCAATCCCCATTTCTTCTCCTATTACTCTCCCTCTAAACTCGGTGATTCCCCCTTTTCGCCCTCAACAAGCCCCTTCAAATCCTTCAATCCCTGCTAGTTTCCCTTACCCTCCAGCACCACAGTCCGGCTTACCATTTTATTCGGGGTTTAATTCCGCCACCCCTGTTTTTCCCACAGCTCCTACACCCTCCTTATCTCCATATCCAATCTTAACCCCTCCCTTGAATGTCAAGCTCACCAACTCCAACTACCTCTTATGGAAGAATCAGTTGCTGAATCACATAATTGCGTTCGATATGGAGAGTTTCATCGATGGTACCCCTGTGCCTATGCGGTTTCTTGACTCTGCTCAAACTCAACAGCAAACGAACCTTGTCTTCGTTGGAAAAACAGCACGAACACCACCACGAGGATTCACCGGTATTCTCGAACAGGATCTTACGTTGGACGCTTGTGGGAGCAAAAACTCTAAGGATTTTTCCTGGAAGAAGAACTCTGTATTCTCAGAGAGAGTGCAGAACGAGAGAGAGGATGAGAGGGAGCGTGAGAGGCGTGAGACTTGGGCTATTCTGCAACTGAATGAAGACCAAGATAATAAAGGAATAGTTAAGCCACCTCACGCATCATCAGAACCACAACTGCACTCTTCTCACTACAGATATATTTCTGTGTCCACGGATATTGACCGTCAACAGCAAGTTAGCCCTTCACGTGTGTTCGTACCCCAGCTAGGTCAAATTACCGTTTTACCCCTGGGCTACCTCTTGGTCCTTAAGTACCAGTGCTCCTCTAATGAACAACCTGTTTGTGGTCCAACCAGCAAACAGAAATCCCTCTCGTGCCATAAAGAGGGTAGGGCCCATTGTTCAAGACCCGGAGACACCACTTAA

Coding sequence (CDS)

ATGACAGAGACCCACCCTAATACTTCAATCCCCATTTCTTCTCCTATTACTCTCCCTCTAAACTCGGTGATTCCCCCTTTTCGCCCTCAACAAGCCCCTTCAAATCCTTCAATCCCTGCTAGTTTCCCTTACCCTCCAGCACCACAGTCCGGCTTACCATTTTATTCGGGGTTTAATTCCGCCACCCCTGTTTTTCCCACAGCTCCTACACCCTCCTTATCTCCATATCCAATCTTAACCCCTCCCTTGAATGTCAAGCTCACCAACTCCAACTACCTCTTATGGAAGAATCAGTTGCTGAATCACATAATTGCGTTCGATATGGAGAGTTTCATCGATGGTACCCCTGTGCCTATGCGGTTTCTTGACTCTGCTCAAACTCAACAGCAAACGAACCTTGTCTTCGTTGGAAAAACAGCACGAACACCACCACGAGGATTCACCGGTATTCTCGAACAGGATCTTACGTTGGACGCTTGTGGGAGCAAAAACTCTAAGGATTTTTCCTGGAAGAAGAACTCTGTATTCTCAGAGAGAGTGCAGAACGAGAGAGAGGATGAGAGGGAGCGTGAGAGGCGTGAGACTTGGGCTATTCTGCAACTGAATGAAGACCAAGATAATAAAGGAATAGTTAAGCCACCTCACGCATCATCAGAACCACAACTGCACTCTTCTCACTACAGATATATTTCTGTGTCCACGGATATTGACCGTCAACAGCAAGTTAGCCCTTCACGTGTGTTCGTACCCCAGCTAGGTCAAATTACCGTTTTACCCCTGGGCTACCTCTTGGTCCTTAAGTACCAGTGCTCCTCTAATGAACAACCTGTTTGTGGTCCAACCAGCAAACAGAAATCCCTCTCGTGCCATAAAGAGGGTAGGGCCCATTGTTCAAGACCCGGAGACACCACTTAA

Protein sequence

MTETHPNTSIPISSPITLPLNSVIPPFRPQQAPSNPSIPASFPYPPAPQSGLPFYSGFNSATPVFPTAPTPSLSPYPILTPPLNVKLTNSNYLLWKNQLLNHIIAFDMESFIDGTPVPMRFLDSAQTQQQTNLVFVGKTARTPPRGFTGILEQDLTLDACGSKNSKDFSWKKNSVFSERVQNEREDERERERRETWAILQLNEDQDNKGIVKPPHASSEPQLHSSHYRYISVSTDIDRQQQVSPSRVFVPQLGQITVLPLGYLLVLKYQCSSNEQPVCGPTSKQKSLSCHKEGRAHCSRPGDTT

Homology

[Close]

BLAST of Lag0027684 vs. NCBI nr
Match: RVW56403.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 67.4 bits (163), Expect = 2.4e-07
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 62  TPVFPTAPTPSLSPYPILTPPLNVKLTNSNYLLWKNQLLNHIIAFDMESFIDG-TPVPMR 121
           TP+F  +P  + + YP L+ PL +KL  +N  LWKNQLLN IIA  +E FI+G TP+P +
Sbjct: 21  TPIF--SPNITQANYPSLSQPLTIKLDETNLFLWKNQLLNVIIANGLEDFIEGETPIPAK 80

Query: 122 FLDSAQTQ 129
           FLD AQ Q
Sbjct: 81  FLDDAQLQ 86

[Close]

BLAST of Lag0027684 vs. NCBI nr
Match: RVX22862.1 (hypothetical protein CK203_008411 [Vitis vinifera])

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-06
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 62  TPVFPTAPTPSLSPYPILTPPLNVKLTNSNYLLWKNQLLNHIIAFDMESFIDG-TPVPMR 121
           TP+F  +P  + + YP L+ PL +KL  +N  LWKNQL+N IIA  +E FI+G TP+P +
Sbjct: 21  TPIF--SPNITQANYPSLSQPLTIKLDETNLFLWKNQLMNVIIANGLEDFIEGETPIPAK 80

Query: 122 FLDSAQ 127
           FLD AQ
Sbjct: 81  FLDDAQ 84

[Close]

BLAST of Lag0027684 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 62.8 bits (151), Expect = 6.0e-06
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 58  FNSATPVF-PTAPTP-SLSPYPILTPPLNVKLTNSNYLLWKNQLLNHIIAFDMESFIDGT 117
           F   TP F    P P S +P+P L  PLNVKL ++N+LLWKNQLLN +IA  +  ++DGT
Sbjct: 3   FPPPTPNFLAQPPNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIANGLRGYLDGT 62

Query: 118 PV-PMRFLDSAQTQ 129
            + P +FLD  Q Q
Sbjct: 63  IMPPPQFLDHHQLQ 76

[Close]

BLAST of Lag0027684 vs. NCBI nr
Match: RVW43596.1 (hypothetical protein CK203_097540 [Vitis vinifera])

HSP 1 Score: 62.0 bits (149), Expect = 1.0e-05
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 70  TPSLSPYPILTPPLNVKLTNSNYLLWKNQLLNHIIAFDMESFIDGT-PVPMRFLD 124
           TPS S +P +  PL VKL N NYL+WKNQLLN IIA  ++ FIDG+ P P RFL+
Sbjct: 26  TPSFS-FPSMNQPLTVKLDNGNYLIWKNQLLNVIIANRLDDFIDGSRPCPPRFLN 79

[Close]

BLAST of Lag0027684 vs. NCBI nr
Match: GFY85402.1 (hypothetical protein Acr_04g0001400 [Actinidia rufa])

HSP 1 Score: 60.5 bits (145), Expect = 3.0e-05
Identity = 45/106 (42.45%), Postives = 60/106 (56.60%), Query Frame = 0


Query: 32  APSNPSIPASFPYPPAPQSG-LPFYSGFNSATPVFPTAPTPSLSPYPILTPPLNVKLTNS 91
           A S     ++ P PP P S  LP  S  N    +  T+P P++   P +  PL VKL + 
Sbjct: 2   ASSTTDSASTPPAPPPPTSNPLPSSSIPNPNPQILNTSPLPNM---PSINQPLAVKLDDH 61

Query: 92  NYLLWKNQLLNHIIAFDMESFIDGTPV-PMRFLDSAQTQQQTNLVF 136
           NY++WK QLLN +IA  +E F+DG+ V P RFLD    QQQ+N  F
Sbjct: 62  NYIIWKEQLLNIVIANGLEEFLDGSRVCPPRFLD--PQQQQSNPEF 102

[Close]

BLAST of Lag0027684 vs. ExPASy TrEMBL
Match: A0A438F8X3 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2675 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-07
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 62  TPVFPTAPTPSLSPYPILTPPLNVKLTNSNYLLWKNQLLNHIIAFDMESFIDG-TPVPMR 121
           TP+F  +P  + + YP L+ PL +KL  +N  LWKNQLLN IIA  +E FI+G TP+P +
Sbjct: 21  TPIF--SPNITQANYPSLSQPLTIKLDETNLFLWKNQLLNVIIANGLEDFIEGETPIPAK 80

Query: 122 FLDSAQTQ 129
           FLD AQ Q
Sbjct: 81  FLDDAQLQ 86

[Close]

BLAST of Lag0027684 vs. ExPASy TrEMBL
Match: A0A438KNU0 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_008411 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.8e-07
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 62  TPVFPTAPTPSLSPYPILTPPLNVKLTNSNYLLWKNQLLNHIIAFDMESFIDG-TPVPMR 121
           TP+F  +P  + + YP L+ PL +KL  +N  LWKNQL+N IIA  +E FI+G TP+P +
Sbjct: 21  TPIF--SPNITQANYPSLSQPLTIKLDETNLFLWKNQLMNVIIANGLEDFIEGETPIPAK 80

Query: 122 FLDSAQ 127
           FLD AQ
Sbjct: 81  FLDDAQ 84

[Close]

BLAST of Lag0027684 vs. ExPASy TrEMBL
Match: A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.9e-06
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 58  FNSATPVF-PTAPTP-SLSPYPILTPPLNVKLTNSNYLLWKNQLLNHIIAFDMESFIDGT 117
           F   TP F    P P S +P+P L  PLNVKL ++N+LLWKNQLLN +IA  +  ++DGT
Sbjct: 3   FPPPTPNFLAQPPNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIANGLRGYLDGT 62

Query: 118 PV-PMRFLDSAQTQ 129
            + P +FLD  Q Q
Sbjct: 63  IMPPPQFLDHHQLQ 76

[Close]

BLAST of Lag0027684 vs. ExPASy TrEMBL
Match: A0A438E760 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_097540 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.0e-06
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 70  TPSLSPYPILTPPLNVKLTNSNYLLWKNQLLNHIIAFDMESFIDGT-PVPMRFLD 124
           TPS S +P +  PL VKL N NYL+WKNQLLN IIA  ++ FIDG+ P P RFL+
Sbjct: 26  TPSFS-FPSMNQPLTVKLDNGNYLIWKNQLLNVIIANRLDDFIDGSRPCPPRFLN 79

[Close]

BLAST of Lag0027684 vs. ExPASy TrEMBL
Match: A0A7J0EGI5 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-05
Identity = 45/106 (42.45%), Postives = 60/106 (56.60%), Query Frame = 0


Query: 32  APSNPSIPASFPYPPAPQSG-LPFYSGFNSATPVFPTAPTPSLSPYPILTPPLNVKLTNS 91
           A S     ++ P PP P S  LP  S  N    +  T+P P++   P +  PL VKL + 
Sbjct: 2   ASSTTDSASTPPAPPPPTSNPLPSSSIPNPNPQILNTSPLPNM---PSINQPLAVKLDDH 61

Query: 92  NYLLWKNQLLNHIIAFDMESFIDGTPV-PMRFLDSAQTQQQTNLVF 136
           NY++WK QLLN +IA  +E F+DG+ V P RFLD    QQQ+N  F
Sbjct: 62  NYIIWKEQLLNIVIANGLEEFLDGSRVCPPRFLD--PQQQQSNPEF 102

The following BLAST results are available for this feature:

BLAST of Lag0027684 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW56403.1	2.4e-07	52.94	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
RVX22862.1	1.2e-06	51.52	hypothetical protein CK203_008411 [Vitis vinifera]	[more]
XP_022155181.1	6.0e-06	50.00	uncharacterized protein LOC111022315 [Momordica charantia]	[more]
RVW43596.1	1.0e-05	60.00	hypothetical protein CK203_097540 [Vitis vinifera]	[more]
GFY85402.1	3.0e-05	42.45	hypothetical protein Acr_04g0001400 [Actinidia rufa]	[more]

BLAST of Lag0027684 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0027684 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438F8X3	1.2e-07	52.94	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A438KNU0	5.8e-07	51.52	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_008411 PE=4 SV=1	[more]
A0A6J1DQX7	2.9e-06	50.00	uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A438E760	5.0e-06	60.00	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_097540 PE=4 SV=1	[more]
A0A7J0EGI5	1.4e-05	42.45	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1	[more]

BLAST of Lag0027684 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 277..304
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 287..304

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0027684.1	Lag0027684.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding