Lag0027683 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0027683
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	photosystem I assembly factor PSA3, chloroplastic
Location	chr8: 3467631 .. 3469473 (-)
RNA-Seq Expression	Lag0027683
Synteny	Lag0027683

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGTGACCTCAACTTCCACTACTTCTTCTTCATTCCACTCCAATCCTAAATCCTTCTTCCTTTCTCAACCGATCTCCCCTTCCCGGCTTCTTCTCCGGCGAATATATGGTTCCGCCGCCGGCCATCGTGGTCGCCGCCGGCCGCCGAACTCGGGCGGCGTGTTGTCCGTTAGGGCTTACATGGAGAATCCGAACTCTCTGTCGGGGTTTGCGAATAAGGTGATCGGGTCTCTGCCGGTGGTCGGACTGATCGCGAGGATTCTGAGCGACGAAGGCGGCGTCGGCAGCGACATTATCGATTTTGCGGAGTTCCGGAGACGAGTTGGGAAGAAATGTACGATTATGGATTCTAAAGCCTTCTATGAATTTCAAGAAAGAAAAGGCAAGGTAGTGTCTCTCAATTTATTTTTACTTCTTTTAATCCTTTTACTTATCTATTTTATCCACCTAATTTAATTCGTAAACTAAAAGAAATTTATTAACATTATTGAGGTTAAGAAATTAAGGCCCCAATAGCTAACCATTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATCATGCTTGTTTTCTTCCAATTTTCTTACAAAAGAATTGACACATCTTAATTCATAGCTAAATTCTAAAAACAAAAAACAAGTTTTTGAAAACTATTTTTTTTTTTTTTTTTTAGTTTTCAAAACCTAAGTGGAAGTGTTTTTAAGCTTAATTTTCAAAAACCAAAAACCGTTATTAAATAGAGCCTAAATACACATGATTTTAGAAAATTATGAATTAAATTTATAAGTTAACTATTCTTTTCAAGTTCAACAATGTGGTAGGGGAGAGTGATTGAACTATCAACTTTAAAAAAAATTATTAAACGTAAAAGTCACATTCCGACTGACTACCCTCTAACTCATGGATACATAGTGAAAGTGTAATTTTAAATTTCTCACTCCTACCTCTAATAGTATAAAACCGCAAGCCTACTTAAATAATTTCTCCAACTTCTAGGATGATAGTAACCCTATCCACTAAGTTACGTTTGAATTGATAACTCATACTTAAAATTTATTATTGTGTTGGGTCGAATCAAAGTATTATGAACCTCTCATTCATTTTTGTCTCGTTGTTGAACTAAAAATAACAAATAAAGAACGAACTTGTCAATCTAACAATAAGTTTAGAGAATCTCGTATGAGTTAATAGAAAAAAATGAAATGTAAATGATAAGATTCTGAAGTTGAATAATTGGTTGTGGTAGGCAGGAGAGCCATTGTATGTTCTATTGTGCTGTTGGCTGGCAGCTGTGGGAGCTGGTTTGCTTAAATCAGAGGAGATTTTGGAAGGAGTAGCAAGGCTTCGGATTTCAAATGATATTGAATTTGAAGAGGAGACTTTCCTTGCTATGATGAATGAGGCTAGAGAGGTTCGTTAATCATATATTTTCGGTTTAAGTCCAGTTCATTCGTATCACTTTCATCTTACTAAGAATCGGTACTACGTGCGTCTGATGTTCACTTTTAGAAACGGGAGAAACTAAAAGTTGCAGTTCCGAACATTCCGATGGTGGTTCGAGTCGAGAAAGCTATCGACGCCATTTATGTTTGTTCCTTTGGGAGAGACCCAATAGAGGAAGATGATGAGAAACTCCTGGTCATCATGCTGAGTGCTGTATTTCCATCTGTTGGGCAAACTGAGATTCAAAGGATTGTGAAAGAGAAGGCAATTAGAATTGCTGAAGGGAAGGACATTGCCATTGTTCCTGAGCCACAGCCTTTGTCAAAAGAAGCTATTTTAGCTCAAATGAAGGACCTCCAATTCCTCCAAGAGAAGAGTGAGACTTAG

mRNA sequence

ATGTCCGTGACCTCAACTTCCACTACTTCTTCTTCATTCCACTCCAATCCTAAATCCTTCTTCCTTTCTCAACCGATCTCCCCTTCCCGGCTTCTTCTCCGGCGAATATATGGTTCCGCCGCCGGCCATCGTGGTCGCCGCCGGCCGCCGAACTCGGGCGGCGTGTTGTCCGTTAGGGCTTACATGGAGAATCCGAACTCTCTGTCGGGGTTTGCGAATAAGGTGATCGGGTCTCTGCCGGTGGTCGGACTGATCGCGAGGATTCTGAGCGACGAAGGCGGCGTCGGCAGCGACATTATCGATTTTGCGGAGTTCCGGAGACGAGTTGGGAAGAAATGTACGATTATGGATTCTAAAGCCTTCTATGAATTTCAAGAAAGAAAAGGCAAGGCAGGAGAGCCATTGTATGTTCTATTGTGCTGTTGGCTGGCAGCTGTGGGAGCTGGTTTGCTTAAATCAGAGGAGATTTTGGAAGGAGTAGCAAGGCTTCGGATTTCAAATGATATTGAATTTGAAGAGGAGACTTTCCTTGCTATGATGAATGAGGCTAGAGAGAAACGGGAGAAACTAAAAGTTGCAGTTCCGAACATTCCGATGGTGGTTCGAGTCGAGAAAGCTATCGACGCCATTTATGTTTGTTCCTTTGGGAGAGACCCAATAGAGGAAGATGATGAGAAACTCCTGGTCATCATGCTGAGTGCTGTATTTCCATCTGTTGGGCAAACTGAGATTCAAAGGATTGTGAAAGAGAAGGCAATTAGAATTGCTGAAGGGAAGGACATTGCCATTGTTCCTGAGCCACAGCCTTTGTCAAAAGAAGCTATTTTAGCTCAAATGAAGGACCTCCAATTCCTCCAAGAGAAGAGTGAGACTTAG

Coding sequence (CDS)

ATGTCCGTGACCTCAACTTCCACTACTTCTTCTTCATTCCACTCCAATCCTAAATCCTTCTTCCTTTCTCAACCGATCTCCCCTTCCCGGCTTCTTCTCCGGCGAATATATGGTTCCGCCGCCGGCCATCGTGGTCGCCGCCGGCCGCCGAACTCGGGCGGCGTGTTGTCCGTTAGGGCTTACATGGAGAATCCGAACTCTCTGTCGGGGTTTGCGAATAAGGTGATCGGGTCTCTGCCGGTGGTCGGACTGATCGCGAGGATTCTGAGCGACGAAGGCGGCGTCGGCAGCGACATTATCGATTTTGCGGAGTTCCGGAGACGAGTTGGGAAGAAATGTACGATTATGGATTCTAAAGCCTTCTATGAATTTCAAGAAAGAAAAGGCAAGGCAGGAGAGCCATTGTATGTTCTATTGTGCTGTTGGCTGGCAGCTGTGGGAGCTGGTTTGCTTAAATCAGAGGAGATTTTGGAAGGAGTAGCAAGGCTTCGGATTTCAAATGATATTGAATTTGAAGAGGAGACTTTCCTTGCTATGATGAATGAGGCTAGAGAGAAACGGGAGAAACTAAAAGTTGCAGTTCCGAACATTCCGATGGTGGTTCGAGTCGAGAAAGCTATCGACGCCATTTATGTTTGTTCCTTTGGGAGAGACCCAATAGAGGAAGATGATGAGAAACTCCTGGTCATCATGCTGAGTGCTGTATTTCCATCTGTTGGGCAAACTGAGATTCAAAGGATTGTGAAAGAGAAGGCAATTAGAATTGCTGAAGGGAAGGACATTGCCATTGTTCCTGAGCCACAGCCTTTGTCAAAAGAAGCTATTTTAGCTCAAATGAAGGACCTCCAATTCCTCCAAGAGAAGAGTGAGACTTAG

Protein sequence

MSVTSTSTTSSSFHSNPKSFFLSQPISPSRLLLRRIYGSAAGHRGRRRPPNSGGVLSVRAYMENPNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYEFQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKREKLKVAVPNIPMVVRVEKAIDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGQTEIQRIVKEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQEKSET

Homology

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BLAST of Lag0027683 vs. NCBI nr
Match: XP_038905081.1 (photosystem I assembly factor PSA3, chloroplastic [Benincasa hispida])

HSP 1 Score: 498.8 bits (1283), Expect = 3.1e-137
Identity = 267/291 (91.75%), Postives = 275/291 (94.50%), Query Frame = 0


Query: 1   MSVTSTSTTSSSFHSNPKSFFLSQPISPSRLLLRRIYGSAAGHRGRRRPPNSGGVLSVRA 60
           MSVTSTS+TSSS HSN KSFFLS+PISPSRL LR+IY       GRRR  NS GVLSV+A
Sbjct: 1   MSVTSTSSTSSSLHSNLKSFFLSKPISPSRLFLRQIY-------GRRRQSNSAGVLSVKA 60

Query: 61  YMENPNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKA 120
           YMENPNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIM+SKA
Sbjct: 61  YMENPNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMESKA 120

Query: 121 FYEFQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMM 180
           FYEFQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMM
Sbjct: 121 FYEFQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMM 180

Query: 181 NEAREKREKLKVAVPNIPMVVRVEKAIDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVG 240
           NEAREKREKLKVAVPNIPM VRVEKA+DAIYVCSFGRDPIEEDDEKLLVIMLSAVF SV 
Sbjct: 181 NEAREKREKLKVAVPNIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFASVR 240

Query: 241 QTEIQRIVKEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQEKSET 292
           +TEIQRIVKEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQEK+ET
Sbjct: 241 ETEIQRIVKEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQEKTET 284

[Close]

BLAST of Lag0027683 vs. NCBI nr
Match: XP_008443515.1 (PREDICTED: uncharacterized protein LOC103487086 [Cucumis melo] >KAA0053674.1 putative ubiquinone biosynthesis UbiB [Cucumis melo var. makuwa] >TYK14001.1 putative ubiquinone biosynthesis UbiB [Cucumis melo var. makuwa])

HSP 1 Score: 495.0 bits (1273), Expect = 4.5e-136
Identity = 260/291 (89.35%), Postives = 272/291 (93.47%), Query Frame = 0


Query: 1   MSVTSTSTTSSSFHSNPKSFFLSQPISPSRLLLRRIYGSAAGHRGRRRPPNSGGVLSVRA 60
           MSVTSTSTTSSS HSNPKSFFLS PISPSRL L ++Y       GRRR  NS G  S++A
Sbjct: 1   MSVTSTSTTSSSLHSNPKSFFLSNPISPSRLFLPQLY-------GRRRSSNSAGAFSIKA 60

Query: 61  YMENPNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKA 120
           YMENPNSLSGFA+KVIGSLPVVGLIARI+SDEGGVGSD+IDFAEFRRRVGKKCTIM+SKA
Sbjct: 61  YMENPNSLSGFASKVIGSLPVVGLIARIMSDEGGVGSDLIDFAEFRRRVGKKCTIMESKA 120

Query: 121 FYEFQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMM 180
           FYEFQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETF+AMM
Sbjct: 121 FYEFQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFIAMM 180

Query: 181 NEAREKREKLKVAVPNIPMVVRVEKAIDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVG 240
           NEAREKREKLK AVPNIPM VRVEKA+DAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVG
Sbjct: 181 NEAREKREKLKAAVPNIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVG 240

Query: 241 QTEIQRIVKEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQEKSET 292
           + EIQRIVKEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQEK+ET
Sbjct: 241 EIEIQRIVKEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQEKNET 284

[Close]

BLAST of Lag0027683 vs. NCBI nr
Match: XP_004141087.1 (photosystem I assembly factor PSA3, chloroplastic [Cucumis sativus] >KGN59665.1 hypothetical protein Csa_000816 [Cucumis sativus])

HSP 1 Score: 489.6 bits (1259), Expect = 1.9e-134
Identity = 257/291 (88.32%), Postives = 270/291 (92.78%), Query Frame = 0


Query: 1   MSVTSTSTTSSSFHSNPKSFFLSQPISPSRLLLRRIYGSAAGHRGRRRPPNSGGVLSVRA 60
           MSVTSTSTTSSS HSNPK FFLS PISPS L LR++Y       GRRR PNS G  S++A
Sbjct: 1   MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLY-------GRRRNPNSAGAFSIKA 60

Query: 61  YMENPNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKA 120
           YME+PNSLSGFA+KVIGSLPVVGLIARILSDEGGVG+DIIDFAEFRRRVGKKCTIM+SKA
Sbjct: 61  YMESPNSLSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKA 120

Query: 121 FYEFQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMM 180
           FYEFQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMM
Sbjct: 121 FYEFQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMM 180

Query: 181 NEAREKREKLKVAVPNIPMVVRVEKAIDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVG 240
           NEAREKREKLK AVPNIPM VR+EKA+DAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVG
Sbjct: 181 NEAREKREKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVG 240

Query: 241 QTEIQRIVKEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQEKSET 292
           + EIQRI+KEKAIRIAEGKD AIVPEPQPLSKEAILAQMKDLQFLQE +ET
Sbjct: 241 EIEIQRILKEKAIRIAEGKDTAIVPEPQPLSKEAILAQMKDLQFLQENNET 284

[Close]

BLAST of Lag0027683 vs. NCBI nr
Match: XP_023530868.1 (photosystem I assembly factor PSA3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 487.6 bits (1254), Expect = 7.2e-134
Identity = 260/291 (89.35%), Postives = 273/291 (93.81%), Query Frame = 0


Query: 1   MSVTSTSTTSSSFHSNPKSFFLSQPISPSRLLLRRIYGSAAGHRGRRRPPNSGGVLSVRA 60
           M+VTSTSTT SSFHSNPKSFFLS  ISP +LL R+ +GS     GRRR PNS GVLSVRA
Sbjct: 1   MAVTSTSTT-SSFHSNPKSFFLSSLISPPKLLHRKFHGSV----GRRRHPNSTGVLSVRA 60

Query: 61  YMENPNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKA 120
           YMENPNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKA
Sbjct: 61  YMENPNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKA 120

Query: 121 FYEFQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMM 180
           FY+FQER+GK GEPL+VL+CCWLAAVGAGLLKSEEILEGVARLRIS+DIEFEEETFLAMM
Sbjct: 121 FYDFQERRGKPGEPLFVLMCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMM 180

Query: 181 NEAREKREKLKVAVPNIPMVVRVEKAIDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVG 240
           NEAREKREKLKVAV  IPM VRVEKA+DAIYVCSFGRDPIEEDDEKLLVIMLS+VFP+VG
Sbjct: 181 NEAREKREKLKVAVSKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVG 240

Query: 241 QTEIQRIVKEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQEKSET 292
           QTEIQRIVKEKA+RIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQE SET
Sbjct: 241 QTEIQRIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENSET 286

[Close]

BLAST of Lag0027683 vs. NCBI nr
Match: KAG7022731.1 (hypothetical protein SDJN02_16466 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 485.7 bits (1249), Expect = 2.7e-133
Identity = 259/291 (89.00%), Postives = 273/291 (93.81%), Query Frame = 0


Query: 1   MSVTSTSTTSSSFHSNPKSFFLSQPISPSRLLLRRIYGSAAGHRGRRRPPNSGGVLSVRA 60
           M+VTSTSTT SSFHSNPKSFFLS  ISP +LL R+ +GS     GRRR P S GVLSVRA
Sbjct: 1   MAVTSTSTT-SSFHSNPKSFFLSSLISPPKLLHRQFHGSV----GRRRHPTSTGVLSVRA 60

Query: 61  YMENPNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKA 120
           YMENPNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKA
Sbjct: 61  YMENPNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKA 120

Query: 121 FYEFQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMM 180
           FY+FQER+GK GEPL+VLLCCWLAAVGAGLLKSEEILEGVARLRIS+DIEFEEETFLAMM
Sbjct: 121 FYDFQERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMM 180

Query: 181 NEAREKREKLKVAVPNIPMVVRVEKAIDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVG 240
           NEAREKREKLKVAVP IPM VRVEKA+DAIYVCSFGRDPIEE+DEKLLVIMLS+VFP+VG
Sbjct: 181 NEAREKREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDPIEEEDEKLLVIMLSSVFPTVG 240

Query: 241 QTEIQRIVKEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQEKSET 292
           Q+EIQRIVKEKA+RIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQE SET
Sbjct: 241 QSEIQRIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENSET 286

[Close]

BLAST of Lag0027683 vs. ExPASy Swiss-Prot
Match: Q9M3C6 (Photosystem I assembly factor PSA3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSA3 PE=1 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 7.6e-86
Identity = 172/281 (61.21%), Postives = 211/281 (75.09%), Query Frame = 0


Query: 10  SSSFHSNPKSFFLSQPISPSRLLLRRIYGSAAGHRGRRRPPNSGG-VLSVRAYMENPNSL 69
           S+SFH    SFF  +  +PS                  RP   GG  LS+RAY+E PNS 
Sbjct: 8   STSFHQISPSFFHLRLRNPST-------------TSSSRPKLDGGFALSIRAYIEKPNSF 67

Query: 70  SGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYEFQERK 129
           S FANKVIGSLPV+GL+ARI+SDEGGVG D++DFAEFR+RVG KCT  DS+AFYEFQ+R+
Sbjct: 68  STFANKVIGSLPVIGLLARIISDEGGVGRDLVDFAEFRKRVGNKCTPDDSRAFYEFQQRR 127

Query: 130 GKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKRE 189
           GKAGEPLYVLLCCW+AAVGAGLLKSEEILEGV R+ ISND+EFEE+ F+A+M EAR++R 
Sbjct: 128 GKAGEPLYVLLCCWVAAVGAGLLKSEEILEGVTRVSISNDLEFEEQNFIALMTEARQRRA 187

Query: 190 KLKVAVPNIPMVVRVEKAIDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGQTEIQRIV 249
           KL +  P IPM +RVEKA++ IY C F R  IEE+DEKLL +ML AVFPSV ++EI+RI+
Sbjct: 188 KLNIDAPTIPMELRVEKALEGIYACCFRRGLIEEEDEKLLKVMLIAVFPSVEKSEIERII 247

Query: 250 KEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQEKS 290
           KEKA R+ EG +   V   + L KEAI  QMKDL+FLQ+++
Sbjct: 248 KEKATRVEEGGEEENVMAKR-LPKEAIQMQMKDLEFLQQQN 274

[Close]

BLAST of Lag0027683 vs. ExPASy Swiss-Prot
Match: B4FSG1 (Photosystem I assembly factor PSA3, chloroplastic OS=Zea mays OX=4577 GN=PSA3 PE=2 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 2.6e-78
Identity = 147/232 (63.36%), Postives = 187/232 (80.60%), Query Frame = 0


Query: 57  SVRAYME-NPNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTI 116
           +V AYME NPNS +  A +++G+LP+VGL+ARIL+DEGGVG DIIDFAEFRRRV KKCT+
Sbjct: 35  AVVAYMEPNPNSPAAIAGRLVGALPIVGLVARILNDEGGVGGDIIDFAEFRRRVSKKCTV 94

Query: 117 MDSKAFYEFQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEET 176
           MDSKAFY+F +R+GK G+P YVLLCCWLAA+GAGLLK+EEILEGVARLRISNDIEFEEET
Sbjct: 95  MDSKAFYDFNQRRGKPGDPFYVLLCCWLAAIGAGLLKTEEILEGVARLRISNDIEFEEET 154

Query: 177 FLAMMNEAREKREKLKVAVPNIPMVVRVEKAIDAIYVCSFGRDPIEEDDEKLLVIMLSAV 236
           F+ MM  A+EKR KLK   P IPM  R EKA++AIYVC FG+D +E++DEKLL  +L+AV
Sbjct: 155 FIDMMRAAKEKRAKLKAPAPQIPMETRAEKALEAIYVCCFGQDMVEDEDEKLLRAILNAV 214

Query: 237 FPSVGQTEIQRIVKEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQE 288
           FPSVG+  ++R+V   A ++A G+      + + +SKE    Q+KDL+FL++
Sbjct: 215 FPSVGRAAVERMVASMAKQVASGER---KRDGRTVSKEVQQRQLKDLEFLKQ 263

[Close]

BLAST of Lag0027683 vs. ExPASy TrEMBL
Match: A0A5D3CQC9 (Putative ubiquinone biosynthesis UbiB OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1119G00270 PE=4 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 2.2e-136
Identity = 260/291 (89.35%), Postives = 272/291 (93.47%), Query Frame = 0


Query: 1   MSVTSTSTTSSSFHSNPKSFFLSQPISPSRLLLRRIYGSAAGHRGRRRPPNSGGVLSVRA 60
           MSVTSTSTTSSS HSNPKSFFLS PISPSRL L ++Y       GRRR  NS G  S++A
Sbjct: 1   MSVTSTSTTSSSLHSNPKSFFLSNPISPSRLFLPQLY-------GRRRSSNSAGAFSIKA 60

Query: 61  YMENPNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKA 120
           YMENPNSLSGFA+KVIGSLPVVGLIARI+SDEGGVGSD+IDFAEFRRRVGKKCTIM+SKA
Sbjct: 61  YMENPNSLSGFASKVIGSLPVVGLIARIMSDEGGVGSDLIDFAEFRRRVGKKCTIMESKA 120

Query: 121 FYEFQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMM 180
           FYEFQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETF+AMM
Sbjct: 121 FYEFQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFIAMM 180

Query: 181 NEAREKREKLKVAVPNIPMVVRVEKAIDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVG 240
           NEAREKREKLK AVPNIPM VRVEKA+DAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVG
Sbjct: 181 NEAREKREKLKAAVPNIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVG 240

Query: 241 QTEIQRIVKEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQEKSET 292
           + EIQRIVKEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQEK+ET
Sbjct: 241 EIEIQRIVKEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQEKNET 284

[Close]

BLAST of Lag0027683 vs. ExPASy TrEMBL
Match: A0A1S3B876 (uncharacterized protein LOC103487086 OS=Cucumis melo OX=3656 GN=LOC103487086 PE=4 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 2.2e-136
Identity = 260/291 (89.35%), Postives = 272/291 (93.47%), Query Frame = 0


Query: 1   MSVTSTSTTSSSFHSNPKSFFLSQPISPSRLLLRRIYGSAAGHRGRRRPPNSGGVLSVRA 60
           MSVTSTSTTSSS HSNPKSFFLS PISPSRL L ++Y       GRRR  NS G  S++A
Sbjct: 1   MSVTSTSTTSSSLHSNPKSFFLSNPISPSRLFLPQLY-------GRRRSSNSAGAFSIKA 60

Query: 61  YMENPNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKA 120
           YMENPNSLSGFA+KVIGSLPVVGLIARI+SDEGGVGSD+IDFAEFRRRVGKKCTIM+SKA
Sbjct: 61  YMENPNSLSGFASKVIGSLPVVGLIARIMSDEGGVGSDLIDFAEFRRRVGKKCTIMESKA 120

Query: 121 FYEFQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMM 180
           FYEFQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETF+AMM
Sbjct: 121 FYEFQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFIAMM 180

Query: 181 NEAREKREKLKVAVPNIPMVVRVEKAIDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVG 240
           NEAREKREKLK AVPNIPM VRVEKA+DAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVG
Sbjct: 181 NEAREKREKLKAAVPNIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVG 240

Query: 241 QTEIQRIVKEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQEKSET 292
           + EIQRIVKEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQEK+ET
Sbjct: 241 EIEIQRIVKEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQEKNET 284

[Close]

BLAST of Lag0027683 vs. ExPASy TrEMBL
Match: A0A0A0LCC2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G836490 PE=4 SV=1)

HSP 1 Score: 489.6 bits (1259), Expect = 9.2e-135
Identity = 257/291 (88.32%), Postives = 270/291 (92.78%), Query Frame = 0


Query: 1   MSVTSTSTTSSSFHSNPKSFFLSQPISPSRLLLRRIYGSAAGHRGRRRPPNSGGVLSVRA 60
           MSVTSTSTTSSS HSNPK FFLS PISPS L LR++Y       GRRR PNS G  S++A
Sbjct: 1   MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLY-------GRRRNPNSAGAFSIKA 60

Query: 61  YMENPNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKA 120
           YME+PNSLSGFA+KVIGSLPVVGLIARILSDEGGVG+DIIDFAEFRRRVGKKCTIM+SKA
Sbjct: 61  YMESPNSLSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKA 120

Query: 121 FYEFQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMM 180
           FYEFQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMM
Sbjct: 121 FYEFQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMM 180

Query: 181 NEAREKREKLKVAVPNIPMVVRVEKAIDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVG 240
           NEAREKREKLK AVPNIPM VR+EKA+DAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVG
Sbjct: 181 NEAREKREKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVG 240

Query: 241 QTEIQRIVKEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQEKSET 292
           + EIQRI+KEKAIRIAEGKD AIVPEPQPLSKEAILAQMKDLQFLQE +ET
Sbjct: 241 EIEIQRILKEKAIRIAEGKDTAIVPEPQPLSKEAILAQMKDLQFLQENNET 284

[Close]

BLAST of Lag0027683 vs. ExPASy TrEMBL
Match: A0A6J1EQR9 (photosystem I assembly factor PSA3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111435039 PE=4 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 6.6e-133
Identity = 258/291 (88.66%), Postives = 272/291 (93.47%), Query Frame = 0


Query: 1   MSVTSTSTTSSSFHSNPKSFFLSQPISPSRLLLRRIYGSAAGHRGRRRPPNSGGVLSVRA 60
           M+VTSTSTT SSFHSNPKSFFL   ISP +LL R+ +GS     GRRR P S GVLSVRA
Sbjct: 1   MAVTSTSTT-SSFHSNPKSFFLYSLISPPKLLHRQFHGSV----GRRRHPTSTGVLSVRA 60

Query: 61  YMENPNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKA 120
           YMENPNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKA
Sbjct: 61  YMENPNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKA 120

Query: 121 FYEFQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMM 180
           FY+FQER+GK GEPL+VLLCCWLAAVGAGLLKSEEILEGVARLRIS+DIEFEEETFLAMM
Sbjct: 121 FYDFQERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMM 180

Query: 181 NEAREKREKLKVAVPNIPMVVRVEKAIDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVG 240
           NEAREKREKLKVAVP IPM VRVEKA+DAIYVCSFGRDPIEEDDEKLLVIMLS+VFP+VG
Sbjct: 181 NEAREKREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVG 240

Query: 241 QTEIQRIVKEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQEKSET 292
           Q+EIQRIVKEKA+RIAEGKDIAIVPEPQPLSKEAILAQMKDLQFL+E SET
Sbjct: 241 QSEIQRIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLRENSET 286

[Close]

BLAST of Lag0027683 vs. ExPASy TrEMBL
Match: A0A6J1JJA4 (photosystem I assembly factor PSA3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486319 PE=4 SV=1)

HSP 1 Score: 476.1 bits (1224), Expect = 1.1e-130
Identity = 255/291 (87.63%), Postives = 269/291 (92.44%), Query Frame = 0


Query: 1   MSVTSTSTTSSSFHSNPKSFFLSQPISPSRLLLRRIYGSAAGHRGRRRPPNSGGVLSVRA 60
           M+VTSTSTT SSFHSNPKSFFLS  ISP +LL R+ +GS     GRRR P S GVLSVRA
Sbjct: 1   MAVTSTSTT-SSFHSNPKSFFLSSLISPPKLLHRQFHGSV----GRRRHPTSTGVLSVRA 60

Query: 61  YMENPNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKA 120
           YMENPNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKA
Sbjct: 61  YMENPNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKA 120

Query: 121 FYEFQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMM 180
           FY+FQER+GK GEPL+VLLCCWLAAVGAGLLKSEEI EGVARLRIS+DIEFEEETFLAMM
Sbjct: 121 FYDFQERRGKPGEPLFVLLCCWLAAVGAGLLKSEEIFEGVARLRISDDIEFEEETFLAMM 180

Query: 181 NEAREKREKLKVAVPNIPMVVRVEKAIDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVG 240
           NEAREKREKLKVAV  IPM VRVEKA+DAIYVCSFGRDPIEE DEKLLVIMLS+VFP+VG
Sbjct: 181 NEAREKREKLKVAVSKIPMEVRVEKALDAIYVCSFGRDPIEEHDEKLLVIMLSSVFPTVG 240

Query: 241 QTEIQRIVKEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQEKSET 292
           Q+EIQR+VKEKA+RIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQE S T
Sbjct: 241 QSEIQRMVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENSGT 286

[Close]

BLAST of Lag0027683 vs. TAIR 10
Match: AT3G55250.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 46 Blast hits to 46 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 318.5 bits (815), Expect = 5.4e-87
Identity = 172/281 (61.21%), Postives = 211/281 (75.09%), Query Frame = 0


Query: 10  SSSFHSNPKSFFLSQPISPSRLLLRRIYGSAAGHRGRRRPPNSGG-VLSVRAYMENPNSL 69
           S+SFH    SFF  +  +PS                  RP   GG  LS+RAY+E PNS 
Sbjct: 8   STSFHQISPSFFHLRLRNPST-------------TSSSRPKLDGGFALSIRAYIEKPNSF 67

Query: 70  SGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYEFQERK 129
           S FANKVIGSLPV+GL+ARI+SDEGGVG D++DFAEFR+RVG KCT  DS+AFYEFQ+R+
Sbjct: 68  STFANKVIGSLPVIGLLARIISDEGGVGRDLVDFAEFRKRVGNKCTPDDSRAFYEFQQRR 127

Query: 130 GKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKRE 189
           GKAGEPLYVLLCCW+AAVGAGLLKSEEILEGV R+ ISND+EFEE+ F+A+M EAR++R 
Sbjct: 128 GKAGEPLYVLLCCWVAAVGAGLLKSEEILEGVTRVSISNDLEFEEQNFIALMTEARQRRA 187

Query: 190 KLKVAVPNIPMVVRVEKAIDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGQTEIQRIV 249
           KL +  P IPM +RVEKA++ IY C F R  IEE+DEKLL +ML AVFPSV ++EI+RI+
Sbjct: 188 KLNIDAPTIPMELRVEKALEGIYACCFRRGLIEEEDEKLLKVMLIAVFPSVEKSEIERII 247

Query: 250 KEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQEKS 290
           KEKA R+ EG +   V   + L KEAI  QMKDL+FLQ+++
Sbjct: 248 KEKATRVEEGGEEENVMAKR-LPKEAIQMQMKDLEFLQQQN 274

The following BLAST results are available for this feature:

BLAST of Lag0027683 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905081.1	3.1e-137	91.75	photosystem I assembly factor PSA3, chloroplastic [Benincasa hispida]	[more]
XP_008443515.1	4.5e-136	89.35	PREDICTED: uncharacterized protein LOC103487086 [Cucumis melo] >KAA0053674.1 put...	[more]
XP_004141087.1	1.9e-134	88.32	photosystem I assembly factor PSA3, chloroplastic [Cucumis sativus] >KGN59665.1 ...	[more]
XP_023530868.1	7.2e-134	89.35	photosystem I assembly factor PSA3, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
KAG7022731.1	2.7e-133	89.00	hypothetical protein SDJN02_16466 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lag0027683 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M3C6	7.6e-86	61.21	Photosystem I assembly factor PSA3, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]
B4FSG1	2.6e-78	63.36	Photosystem I assembly factor PSA3, chloroplastic OS=Zea mays OX=4577 GN=PSA3 PE...	[more]

BLAST of Lag0027683 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CQC9	2.2e-136	89.35	Putative ubiquinone biosynthesis UbiB OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3B876	2.2e-136	89.35	uncharacterized protein LOC103487086 OS=Cucumis melo OX=3656 GN=LOC103487086 PE=...	[more]
A0A0A0LCC2	9.2e-135	88.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G836490 PE=4 SV=1	[more]
A0A6J1EQR9	6.6e-133	88.66	photosystem I assembly factor PSA3, chloroplastic OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1JJA4	1.1e-130	87.63	photosystem I assembly factor PSA3, chloroplastic OS=Cucurbita maxima OX=3661 GN...	[more]

BLAST of Lag0027683 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55250.1	5.4e-87	61.21	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037736	Photosystem I assembly factor PSA3	PANTHER	PTHR36770	PHOTOSYSTEM I ASSEMBLY FACTOR PSA3, CHLOROPLASTIC	coord: 22..291

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0027683.1	Lag0027683.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048564	photosystem I assembly
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0098572	stromal side of plastid thylakoid membrane