Lag0027681 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0027681
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	CCHC-type domain-containing protein
Location	chr8: 3428612 .. 3428968 (-)
RNA-Seq Expression	Lag0027681
Synteny	Lag0027681

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGGAAAAATTAAGGAGTGTCTTAATCGGTTACATCATTGGAGTAGAGAGAGATATGGAGGGTCCATTAGAGGGGCAATTGCGCGAAAAGAGAAGGAAATTAATCTGCTTCTCTCGGAATCTGATCATCATGATGGACATGTTCTTAGGAAAAAGGAAAAGGACTTGGAGAATTTATTAGAGGATGATGAGATATACTGGAAACAGAGAGCTCGAGAAGATTGGTTAAACTGGGGGGACAGGAACACAAAGTGGTTTCATGCGCAGGCCAGCAAGAGAAAGAAAGTTAATAAAATTCGAGGTCTTCTGGATGAGTTTGGAGTTTGGCAAGAAGATGGAGTATGTGGCAAATGA

mRNA sequence

ATGGTCGGAAAAATTAAGGAGTGTCTTAATCGGTTACATCATTGGAGTAGAGAGAGATATGGAGGGTCCATTAGAGGGGCAATTGCGCGAAAAGAGAAGGAAATTAATCTGCTTCTCTCGGAATCTGATCATCATGATGGACATGTTCTTAGGAAAAAGGAAAAGGACTTGGAGAATTTATTAGAGGATGATGAGATATACTGGAAACAGAGAGCTCGAGAAGATTGGTTAAACTGGGGGGACAGGAACACAAAGTGGTTTCATGCGCAGGCCAGCAAGAGAAAGAAAGTTAATAAAATTCGAGGTCTTCTGGATGAGTTTGGAGTTTGGCAAGAAGATGGAGTATGTGGCAAATGA

Coding sequence (CDS)

ATGGTCGGAAAAATTAAGGAGTGTCTTAATCGGTTACATCATTGGAGTAGAGAGAGATATGGAGGGTCCATTAGAGGGGCAATTGCGCGAAAAGAGAAGGAAATTAATCTGCTTCTCTCGGAATCTGATCATCATGATGGACATGTTCTTAGGAAAAAGGAAAAGGACTTGGAGAATTTATTAGAGGATGATGAGATATACTGGAAACAGAGAGCTCGAGAAGATTGGTTAAACTGGGGGGACAGGAACACAAAGTGGTTTCATGCGCAGGCCAGCAAGAGAAAGAAAGTTAATAAAATTCGAGGTCTTCTGGATGAGTTTGGAGTTTGGCAAGAAGATGGAGTATGTGGCAAATGA

Protein sequence

MVGKIKECLNRLHHWSRERYGGSIRGAIARKEKEINLLLSESDHHDGHVLRKKEKDLENLLEDDEIYWKQRAREDWLNWGDRNTKWFHAQASKRKKVNKIRGLLDEFGVWQEDGVCGK

Homology

[Close]

BLAST of Lag0027681 vs. NCBI nr
Match: XP_015382226.1 (uncharacterized protein LOC107175329, partial [Citrus sinensis])

HSP 1 Score: 104.8 bits (260), Expect = 5.3e-19
Identity = 50/110 (45.45%), Postives = 73/110 (66.36%), Query Frame = 0


Query: 4   KIKECLNRLHHWSRERYGGSIRGAIARKEKEINLLLSESDHHDGHVLRKKEKDLENLLED 63
           K +E L  L  WS++ +GG  +     + K  ++  S S +  G  L+K E  ++N+L+D
Sbjct: 51  KARESLGELQLWSKKEFGGRQKQLEQLQNKLKSIRHSFSHYDCGDELKKTENQIDNILQD 110

Query: 64  DEIYWKQRAREDWLNWGDRNTKWFHAQASKRKKVNKIRGLLDEFGVWQED 114
           +EI+WKQR+R DWL  GD+NTK+FHA+AS R+K N+I G+LDE G W ED
Sbjct: 111 EEIFWKQRSRADWLKEGDKNTKFFHAKASARRKKNRIGGILDEQGKWTED 160

[Close]

BLAST of Lag0027681 vs. NCBI nr
Match: XP_006487889.1 (uncharacterized protein LOC102617714 [Citrus sinensis])

HSP 1 Score: 104.8 bits (260), Expect = 5.3e-19
Identity = 50/110 (45.45%), Postives = 73/110 (66.36%), Query Frame = 0


Query: 4   KIKECLNRLHHWSRERYGGSIRGAIARKEKEINLLLSESDHHDGHVLRKKEKDLENLLED 63
           K +E L  L  WS++ +GG  +     + K  ++  S S +  G  L+K E  ++N+L+D
Sbjct: 196 KARESLGELQLWSKKEFGGRQKQLEQLQNKLKSIRHSFSHYDCGDELKKTENQIDNILQD 255

Query: 64  DEIYWKQRAREDWLNWGDRNTKWFHAQASKRKKVNKIRGLLDEFGVWQED 114
           +EI+WKQR+R DWL  GD+NTK+FHA+AS R+K N+I G+LDE G W ED
Sbjct: 256 EEIFWKQRSRADWLKEGDKNTKFFHAKASARRKKNRIGGILDEQGKWTED 305

[Close]

BLAST of Lag0027681 vs. NCBI nr
Match: XP_015388578.1 (uncharacterized protein LOC107178209 [Citrus sinensis])

HSP 1 Score: 95.5 bits (236), Expect = 3.2e-16
Identity = 48/117 (41.03%), Postives = 72/117 (61.54%), Query Frame = 0


Query: 6   KECLNRLHHWSRERYGGSIRGAIARKEKEINLLLSE--------SDHHDGHVLRKKEKDL 65
           K  L +L  WS++ +GG        +EK++N+L  E          H   + ++K E+ +
Sbjct: 71  KSSLAQLKWWSKDEFGG--------REKKLNMLTQELQKAKQNKVQHKQANAIKKIEEQI 130

Query: 66  ENLLEDDEIYWKQRAREDWLNWGDRNTKWFHAQASKRKKVNKIRGLLDEFGVWQEDG 115
            N+L ++EIYW+ RAR DWL   DRNTK+FH++A+ RK+ NKI G+ D+ GVW EDG
Sbjct: 131 HNILFNEEIYWRHRARADWLQASDRNTKFFHSKATARKRKNKIWGVEDKNGVWTEDG 179

[Close]

BLAST of Lag0027681 vs. NCBI nr
Match: XP_030929385.1 (uncharacterized protein LOC115955407 [Quercus lobata])

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-15
Identity = 46/116 (39.66%), Postives = 74/116 (63.79%), Query Frame = 0


Query: 1   MVGKIKECLNRLHHWSRERYGGSIRGAIARKEKEIN-LLLSESDHHDGHVLRKKEKDLEN 60
           MV  +K+C + L  W+ E + G +   I  K + +N L+L   D  +G+ + K  K++ +
Sbjct: 275 MVAGLKQCADDLSRWNGEVF-GRVPRQIQNKRRVLNELVLRVHDGSNGYEINKIRKEIND 334

Query: 61  LLEDDEIYWKQRAREDWLNWGDRNTKWFHAQASKRKKVNKIRGLLDEFGVWQEDGV 116
           LLE +EI W+QR++  W+  GDRNT++FH +AS+RKK N I  +LDE G+W+E  +
Sbjct: 335 LLECEEIMWQQRSKVQWMGLGDRNTRYFHTKASERKKKNTISKILDERGMWRESAL 389

[Close]

BLAST of Lag0027681 vs. NCBI nr
Match: XP_015384098.1 (uncharacterized protein LOC107176315 [Citrus sinensis])

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-15
Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 0


Query: 11  RLHHWSRERYGGSIRGAIARKEKEINLLLSESDHHD-GHVLRKKEKDLENLLEDDEIYWK 70
           RL  WS+  + GS +  + R  K++  +    +H+D G   R+ E  + NLL D+E+YWK
Sbjct: 3   RLKGWSKREF-GSRKEELKRLRKQLERVKQNLEHYDGGDEYRRLENRIHNLLIDEEMYWK 62

Query: 71  QRAREDWLNWGDRNTKWFHAQASKRKKVNKIRGLLDEFGVWQED 114
           QR+R DWL  GD+NTK+FHA+AS RK+ NKI G+ D  G W ED
Sbjct: 63  QRSRADWLKEGDQNTKFFHAKASARKRKNKIWGIEDGQGKWTED 105

The following BLAST results are available for this feature:

BLAST of Lag0027681 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_015382226.1	5.3e-19	45.45	uncharacterized protein LOC107175329, partial [Citrus sinensis]	[more]
XP_006487889.1	5.3e-19	45.45	uncharacterized protein LOC102617714 [Citrus sinensis]	[more]
XP_015388578.1	3.2e-16	41.03	uncharacterized protein LOC107178209 [Citrus sinensis]	[more]
XP_030929385.1	1.6e-15	39.66	uncharacterized protein LOC115955407 [Quercus lobata]	[more]
XP_015384098.1	1.6e-15	46.15	uncharacterized protein LOC107176315 [Citrus sinensis]	[more]

BLAST of Lag0027681 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0027681.1	Lag0027681.1	mRNA