Lag0027647 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0027647
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	T3P18.3
Location	chr8: 2927070 .. 2927855 (-)
RNA-Seq Expression	Lag0027647
Synteny	Lag0027647

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAAATCCAGAAGCTTCCTCTGTTAGAATTCTGTTATTTCTGTACAATGGCAGGTTCTATTTTCTCCTGTAATTTTAGGACATCTGTCCTATTCTGATATCATTCTTTATTCATTATTGCTTGCCCTAATTTGGAAAATTTTTGTATAAGAATGGTTGCGAGCCCTTAATGAAAGGTGTGGAAAATAGAGAACATTTCATCTCTAAAAAATTCTCTATTTCAGAAATTGACTTGGTATCAGAGCTACTCAAATGACCAACGCCTCAATCACTGGAGCTCTCACTACCTTCACACTCCACCGCTCAATCAACTTCTAAATCAAATCATCACGATTAAACTTGATCGAAGCAACTTTCTGCTATGGAAAAACTTAGCTCTCCCTATACTGAGAAGCTACAAACTCGAAGATCACCTCCTTGGGACTGATGTCTGCCCCTTGAAATACATCCCACAAAGCACAGCTGAGAATGCAGCAGCTCAAGTCGGTAGCGGTGAAGTATTAAGCTCTGAAATGCAGACAAGTGGAGCATCTAGCTCAACAATTCCAACAACTCGGGTAAATCCTCTCTATGAAGCTTGGATGACTACTGATCAATTACTTCTGGGTTGGTTATACAACTCAATGAAGTCCGAAGTTGCGACTCAAGTTATGGGATTCGACAACGCAAAGGAATTATGGGATGCTATTCAAAACCTATTTGGGATTCAATCCAGGGCAGAAGAAGATTACTTAAGGCAAATATTTTCAGTAGACTCGCAGAGGTACGCCCAAAATTGCTGA

mRNA sequence

ATGAAGGAAATCCAGAAGCTTCCTCTGTTAGAATTCTGTTATTTCTGTACAATGGCAGCTCTCCCTATACTGAGAAGCTACAAACTCGAAGATCACCTCCTTGGGACTGATGTCTGCCCCTTGAAATACATCCCACAAAGCACAGCTGAGAATGCAGCAGCTCAAGTCGGTAGCGGTGAAGTATTAAGCTCTGAAATGCAGACAAGTGGAGCATCTAGCTCAACAATTCCAACAACTCGGGTAAATCCTCTCTATGAAGCTTGGATGACTACTGATCAATTACTTCTGGGTTGGTTATACAACTCAATGAAGTCCGAAGTTGCGACTCAAGTTATGGGATTCGACAACGCAAAGGAATTATGGGATGCTATTCAAAACCTATTTGGGATTCAATCCAGGGCAGAAGAAGATTACTTAAGGCAAATATTTTCAGTAGACTCGCAGAGGTACGCCCAAAATTGCTGA

Coding sequence (CDS)

ATGAAGGAAATCCAGAAGCTTCCTCTGTTAGAATTCTGTTATTTCTGTACAATGGCAGCTCTCCCTATACTGAGAAGCTACAAACTCGAAGATCACCTCCTTGGGACTGATGTCTGCCCCTTGAAATACATCCCACAAAGCACAGCTGAGAATGCAGCAGCTCAAGTCGGTAGCGGTGAAGTATTAAGCTCTGAAATGCAGACAAGTGGAGCATCTAGCTCAACAATTCCAACAACTCGGGTAAATCCTCTCTATGAAGCTTGGATGACTACTGATCAATTACTTCTGGGTTGGTTATACAACTCAATGAAGTCCGAAGTTGCGACTCAAGTTATGGGATTCGACAACGCAAAGGAATTATGGGATGCTATTCAAAACCTATTTGGGATTCAATCCAGGGCAGAAGAAGATTACTTAAGGCAAATATTTTCAGTAGACTCGCAGAGGTACGCCCAAAATTGCTGA

Protein sequence

MKEIQKLPLLEFCYFCTMAALPILRSYKLEDHLLGTDVCPLKYIPQSTAENAAAQVGSGEVLSSEMQTSGASSSTIPTTRVNPLYEAWMTTDQLLLGWLYNSMKSEVATQVMGFDNAKELWDAIQNLFGIQSRAEEDYLRQIFSVDSQRYAQNC

Homology

[Close]

BLAST of Lag0027647 vs. NCBI nr
Match: XP_038887015.1 (uncharacterized protein LOC120077182 [Benincasa hispida])

HSP 1 Score: 129.8 bits (325), Expect = 2.0e-26
Identity = 67/124 (54.03%), Postives = 79/124 (63.71%), Query Frame = 0


Query: 20  ALPILRSYKLEDHLLGTDVCPLKYIPQSTAENAAAQVGSGEVLSSEMQTSGASSSTIPTT 79
           ALPILR YKLE HL GT +C   +   +         GS        Q SG +SS     
Sbjct: 46  ALPILRGYKLERHLSGTKICSPMFTVSTIPSIETGDFGS--------QASGGASSATGER 105

Query: 80  RVNPLYEAWMTTDQLLLGWLYNSMKSEVATQVMGFDNAKELWDAIQNLFGIQSRAEEDYL 139
             NPLYE W+T DQLLLGW YNSM  EVA Q+MG ++AK LWDAI +LFG+QSRAE+DYL
Sbjct: 106 TFNPLYEVWVTADQLLLGWPYNSMTPEVAVQLMGHESAKSLWDAIHSLFGVQSRAEKDYL 161

Query: 140 RQIF 144
           RQ+F
Sbjct: 166 RQVF 161

[Close]

BLAST of Lag0027647 vs. NCBI nr
Match: KAA0067279.1 (uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa])

HSP 1 Score: 126.3 bits (316), Expect = 2.2e-25
Identity = 67/124 (54.03%), Postives = 80/124 (64.52%), Query Frame = 0


Query: 20  ALPILRSYKLEDHLLGTDVCPLKYIPQSTAENAAAQVGSGEVLSSEMQTSGASSSTIPTT 79
           ALPIL+SYKL  HL G   C  K I  +T  N +    +GE       +   SSS+    
Sbjct: 46  ALPILKSYKLNSHLFGESPCLPKIIMLTTQPNESIVENAGE------PSQETSSSSTAVV 105

Query: 80  RVNPLYEAWMTTDQLLLGWLYNSMKSEVATQVMGFDNAKELWDAIQNLFGIQSRAEEDYL 139
            VNP YE W+TTD LLLGWLYNSM  EV  Q+MGF NAK+LW+A Q+LFGIQSRA+ED+L
Sbjct: 106 TVNPKYERWITTDLLLLGWLYNSMTPEVTIQLMGFTNAKDLWEATQDLFGIQSRAKEDFL 163

Query: 140 RQIF 144
            Q F
Sbjct: 166 HQTF 163

[Close]

BLAST of Lag0027647 vs. NCBI nr
Match: XP_016900937.1 (PREDICTED: uncharacterized protein LOC107991116 [Cucumis melo])

HSP 1 Score: 126.3 bits (316), Expect = 2.2e-25
Identity = 67/124 (54.03%), Postives = 80/124 (64.52%), Query Frame = 0


Query: 20  ALPILRSYKLEDHLLGTDVCPLKYIPQSTAENAAAQVGSGEVLSSEMQTSGASSSTIPTT 79
           ALPIL+SYKL  HL G   C  K I  +T  N +    +GE       +   SSS+    
Sbjct: 121 ALPILKSYKLNSHLFGESPCLPKIIMLTTQPNESIVENAGE------PSQETSSSSTAVV 180

Query: 80  RVNPLYEAWMTTDQLLLGWLYNSMKSEVATQVMGFDNAKELWDAIQNLFGIQSRAEEDYL 139
            VNP YE W+TTD LLLGWLYNSM  EV  Q+MGF NAK+LW+A Q+LFGIQSRA+ED+L
Sbjct: 181 TVNPKYERWITTDLLLLGWLYNSMTPEVTIQLMGFTNAKDLWEATQDLFGIQSRAKEDFL 238

Query: 140 RQIF 144
            Q F
Sbjct: 241 HQTF 238

[Close]

BLAST of Lag0027647 vs. NCBI nr
Match: XP_016902203.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo])

HSP 1 Score: 124.8 bits (312), Expect = 6.5e-25
Identity = 64/123 (52.03%), Postives = 81/123 (65.85%), Query Frame = 0


Query: 20  ALPILRSYKLEDHLLGTDVCPLKYIPQSTAENAAAQVGSGEVLSSEMQTSGASSSTIPTT 79
           ALPIL+ YKLE HL     CP  ++  +++ N        +       T GASSS  P  
Sbjct: 47  ALPILKDYKLEGHLTAETPCPSHFVLSASSSNTTVTEEGADA------TIGASSSITPRI 106

Query: 80  RVNPLYEAWMTTDQLLLGWLYNSMKSEVATQVMGFDNAKELWDAIQNLFGIQSRAEEDYL 139
            VNPL+E W+TTD LLLGWLYNSM  +VA Q+MGF N ++LWDA Q+ FG+QSRAEED+L
Sbjct: 107 -VNPLFEQWVTTDLLLLGWLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFL 162

Query: 140 RQI 143
           RQ+
Sbjct: 167 RQM 162

[Close]

BLAST of Lag0027647 vs. NCBI nr
Match: XP_016902205.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo])

HSP 1 Score: 124.8 bits (312), Expect = 6.5e-25
Identity = 64/123 (52.03%), Postives = 81/123 (65.85%), Query Frame = 0


Query: 20  ALPILRSYKLEDHLLGTDVCPLKYIPQSTAENAAAQVGSGEVLSSEMQTSGASSSTIPTT 79
           ALPIL+ YKLE HL     CP  ++  +++ N        +       T GASSS  P  
Sbjct: 47  ALPILKDYKLEGHLTAETPCPSHFVLSASSSNTTVTEEGADA------TIGASSSITPRI 106

Query: 80  RVNPLYEAWMTTDQLLLGWLYNSMKSEVATQVMGFDNAKELWDAIQNLFGIQSRAEEDYL 139
            VNPL+E W+TTD LLLGWLYNSM  +VA Q+MGF N ++LWDA Q+ FG+QSRAEED+L
Sbjct: 107 -VNPLFEQWVTTDLLLLGWLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFL 162

Query: 140 RQI 143
           RQ+
Sbjct: 167 RQM 162

The following BLAST results are available for this feature:

BLAST of Lag0027647 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887015.1	2.0e-26	54.03	uncharacterized protein LOC120077182 [Benincasa hispida]	[more]
KAA0067279.1	2.2e-25	54.03	uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa]	[more]
XP_016900937.1	2.2e-25	54.03	PREDICTED: uncharacterized protein LOC107991116 [Cucumis melo]	[more]
XP_016902203.1	6.5e-25	52.03	PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo]	[more]
XP_016902205.1	6.5e-25	52.03	PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo]	[more]

BLAST of Lag0027647 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0027647.1	Lag0027647.1	mRNA