Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCTTCCACCTACTCCAATTCTCCCTGTGCAGCCTGCAAGTTCCTACGGCGAAAATGCCTACCGGACTGCGTTTTCGCGCCGTATTTCCCGCCGGAGGAGCCGCAAAAGTTTGCCAACGTCCACAAGATCTTCGGTGCCAGCAATGTCAGCAAATTGCTGAATGAAGTTCAGCCACACCAGCGGGAGGACGCCGTGAACTCGCTCGCCTACGAGGCCGAGGCGAGGATGAAAGACCCCGTCTACGGCTGCGTCGGTGCCATCTCCATCCTCCAAAGGCAAGTCATCAAGCTTCAGAAAGAACTCGATGCCACTAACGCCGATCTCATTCGCTATGCTTGTAGCGAAATCCCCGCCCCGTCCCCGTCCCCGTCCTCGTCGTCGCAGTACGCTCGAAGGTCGTCCTCGACGAGCCATGAGGGAAGCTCATCCACCACTAGCTATGGCCACTACTATTCTGGTCTCTACTTTTCTCCATGGAGTAACAACAACAATGGCCCTTGTGGAGATGGCCATGATCACAAAGGAGAATACAAGTAA
mRNA sequence
ATGTCTTCTTCCACCTACTCCAATTCTCCCTGTGCAGCCTGCAAGTTCCTACGGCGAAAATGCCTACCGGACTGCGTTTTCGCGCCGTATTTCCCGCCGGAGGAGCCGCAAAAGTTTGCCAACGTCCACAAGATCTTCGGTGCCAGCAATGTCAGCAAATTGCTGAATGAAGTTCAGCCACACCAGCGGGAGGACGCCGTGAACTCGCTCGCCTACGAGGCCGAGGCGAGGATGAAAGACCCCGTCTACGGCTGCGTCGGTGCCATCTCCATCCTCCAAAGGCAAGTCATCAAGCTTCAGAAAGAACTCGATGCCACTAACGCCGATCTCATTCGCTATGCTTGTAGCGAAATCCCCGCCCCGTCCCCGTCCCCGTCCTCGTCGTCGCAGTACGCTCGAAGGTCGTCCTCGACGAGCCATGAGGGAAGCTCATCCACCACTAGCTATGGCCACTACTATTCTGGTCTCTACTTTTCTCCATGGAGTAACAACAACAATGGCCCTTGTGGAGATGGCCATGATCACAAAGGAGAATACAAGTAA
Coding sequence (CDS)
ATGTCTTCTTCCACCTACTCCAATTCTCCCTGTGCAGCCTGCAAGTTCCTACGGCGAAAATGCCTACCGGACTGCGTTTTCGCGCCGTATTTCCCGCCGGAGGAGCCGCAAAAGTTTGCCAACGTCCACAAGATCTTCGGTGCCAGCAATGTCAGCAAATTGCTGAATGAAGTTCAGCCACACCAGCGGGAGGACGCCGTGAACTCGCTCGCCTACGAGGCCGAGGCGAGGATGAAAGACCCCGTCTACGGCTGCGTCGGTGCCATCTCCATCCTCCAAAGGCAAGTCATCAAGCTTCAGAAAGAACTCGATGCCACTAACGCCGATCTCATTCGCTATGCTTGTAGCGAAATCCCCGCCCCGTCCCCGTCCCCGTCCTCGTCGTCGCAGTACGCTCGAAGGTCGTCCTCGACGAGCCATGAGGGAAGCTCATCCACCACTAGCTATGGCCACTACTATTCTGGTCTCTACTTTTCTCCATGGAGTAACAACAACAATGGCCCTTGTGGAGATGGCCATGATCACAAAGGAGAATACAAGTAA
Protein sequence
MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPAPSPSPSSSSQYARRSSSTSHEGSSSTTSYGHYYSGLYFSPWSNNNNGPCGDGHDHKGEYK
Homology
BLAST of Lag0027627 vs. NCBI nr
Match:
XP_011652293.1 (LOB domain-containing protein 25 isoform X2 [Cucumis sativus] >KAE8651263.1 hypothetical protein Csa_001141 [Cucumis sativus])
HSP 1 Score: 346.3 bits (887), Expect = 1.6e-91
Identity = 175/180 (97.22%), Postives = 177/180 (98.33%), Query Frame = 0
Query: 1 MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60
MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP
Sbjct: 1 MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60
Query: 61 HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPA 120
HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPA
Sbjct: 61 HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPA 120
Query: 121 PSPSPSSSSQYARRSSSTSHEGSSSTTSYGHYYSGLYFSPWSNNNNGPCGDGHDHKGEYK 180
PSPSSSSQYARRSSSTSHEGSSST+SYGHYY+GLYFSPWSNNNNGPCGDGHD KGEYK
Sbjct: 121 --PSPSSSSQYARRSSSTSHEGSSSTSSYGHYYTGLYFSPWSNNNNGPCGDGHD-KGEYK 177
BLAST of Lag0027627 vs. NCBI nr
Match:
XP_004141196.1 (LOB domain-containing protein 25 isoform X1 [Cucumis sativus])
HSP 1 Score: 346.3 bits (887), Expect = 1.6e-91
Identity = 175/180 (97.22%), Postives = 177/180 (98.33%), Query Frame = 0
Query: 1 MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60
MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP
Sbjct: 19 MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 78
Query: 61 HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPA 120
HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPA
Sbjct: 79 HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPA 138
Query: 121 PSPSPSSSSQYARRSSSTSHEGSSSTTSYGHYYSGLYFSPWSNNNNGPCGDGHDHKGEYK 180
PSPSSSSQYARRSSSTSHEGSSST+SYGHYY+GLYFSPWSNNNNGPCGDGHD KGEYK
Sbjct: 139 --PSPSSSSQYARRSSSTSHEGSSSTSSYGHYYTGLYFSPWSNNNNGPCGDGHD-KGEYK 195
BLAST of Lag0027627 vs. NCBI nr
Match:
XP_008443563.1 (PREDICTED: LOB domain-containing protein 25-like [Cucumis melo] >KAA0053633.1 LOB domain-containing protein 25-like [Cucumis melo var. makuwa] >TYK00802.1 LOB domain-containing protein 25-like [Cucumis melo var. makuwa])
HSP 1 Score: 345.1 bits (884), Expect = 3.6e-91
Identity = 174/180 (96.67%), Postives = 177/180 (98.33%), Query Frame = 0
Query: 1 MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60
MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP
Sbjct: 1 MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60
Query: 61 HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPA 120
HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSE+PA
Sbjct: 61 HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEMPA 120
Query: 121 PSPSPSSSSQYARRSSSTSHEGSSSTTSYGHYYSGLYFSPWSNNNNGPCGDGHDHKGEYK 180
PSPSSSSQYARRSSSTSHEGSSST+SYGHYY+GLYFSPWSNNNNGPCGDGHD KGEYK
Sbjct: 121 --PSPSSSSQYARRSSSTSHEGSSSTSSYGHYYTGLYFSPWSNNNNGPCGDGHD-KGEYK 177
BLAST of Lag0027627 vs. NCBI nr
Match:
XP_022152200.1 (LOB domain-containing protein 25-like [Momordica charantia])
HSP 1 Score: 345.1 bits (884), Expect = 3.6e-91
Identity = 172/180 (95.56%), Postives = 177/180 (98.33%), Query Frame = 0
Query: 1 MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60
M+SSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP
Sbjct: 15 MASSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 74
Query: 61 HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPA 120
HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNA+LIRYAC+EIPA
Sbjct: 75 HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACNEIPA 134
Query: 121 PSPSPSSSSQYARRSSSTSHEGSSSTTSYGHYYSGLYFSPWSNNNNGPCGDGHDHKGEYK 180
PSPSPSSSSQYARRSSST+HEGSSST+SYGHYYSGLYFSPWS NNNGPCGDGHD GEYK
Sbjct: 135 PSPSPSSSSQYARRSSSTNHEGSSSTSSYGHYYSGLYFSPWS-NNNGPCGDGHDKGGEYK 193
BLAST of Lag0027627 vs. NCBI nr
Match:
XP_038905774.1 (LOB domain-containing protein 25-like [Benincasa hispida])
HSP 1 Score: 344.0 bits (881), Expect = 8.0e-91
Identity = 174/180 (96.67%), Postives = 176/180 (97.78%), Query Frame = 0
Query: 1 MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60
MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP
Sbjct: 16 MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 75
Query: 61 HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPA 120
HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPA
Sbjct: 76 HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPA 135
Query: 121 PSPSPSSSSQYARRSSSTSHEGSSSTTSYGHYYSGLYFSPWSNNNNGPCGDGHDHKGEYK 180
PSPSSSSQYAR+SSSTSHE SSST+SYGHYYSGLYFSPWSNNNNGPCGDGHD KGEYK
Sbjct: 136 --PSPSSSSQYARKSSSTSHEASSSTSSYGHYYSGLYFSPWSNNNNGPCGDGHD-KGEYK 192
BLAST of Lag0027627 vs. ExPASy Swiss-Prot
Match:
Q8L8Q3 (LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 SV=3)
HSP 1 Score: 204.1 bits (518), Expect = 1.3e-51
Identity = 94/111 (84.68%), Postives = 105/111 (94.59%), Query Frame = 0
Query: 4 STYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQR 63
S Y+NSPCAACKFLRRKC DCVFAPYFPPEEP KFANVH+IFGASNVSK+L+EV PHQR
Sbjct: 33 SNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQR 92
Query: 64 EDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYA 115
EDAVNSLAYEAEAR+KDPVYGCVGAIS+LQRQV++LQ+EL+ TNADL+RYA
Sbjct: 93 EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYA 143
BLAST of Lag0027627 vs. ExPASy Swiss-Prot
Match:
Q9FML4 (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=1)
HSP 1 Score: 191.8 bits (486), Expect = 6.6e-48
Identity = 112/192 (58.33%), Postives = 126/192 (65.62%), Query Frame = 0
Query: 2 SSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPH 61
SSS NSPCAACKFLRRKC+P C+FAPYFPPEEP KFANVHKIFGASNV+KLLNE+ PH
Sbjct: 3 SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62
Query: 62 QREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPA- 121
QREDAVNSLAYEAEAR++DPVYGCVGAIS LQRQV +LQKELDA NADL Y S A
Sbjct: 63 QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122
Query: 122 -----------PSPSPSSS----SQYARRSSSTSHEGSSSTTSYGHYYSGLYFSPWSNNN 178
P P PS + R S ++ + G Y + F PW+N
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGT---FLPWNN-- 182
BLAST of Lag0027627 vs. ExPASy Swiss-Prot
Match:
O04479 (Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1)
HSP 1 Score: 165.2 bits (417), Expect = 6.7e-40
Identity = 91/175 (52.00%), Postives = 118/175 (67.43%), Query Frame = 0
Query: 3 SSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQ 62
+S+ +NSPCAACKFLRRKC P+CVFAPYFPP++PQKFANVHK+FGASNV+KLLNE+ P Q
Sbjct: 2 ASSSTNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQ 61
Query: 63 REDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPAPS 122
REDAVNSLAYEA+ R++DPVYGCVG IS+LQ Q+ +LQ +L ++L +Y I A +
Sbjct: 62 REDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKYQSLGILAAT 121
Query: 123 PSPSSSSQYARRSSSTSHEGSSSTTSYGHYYSGLYFSPWSNNNNG---PCGDGHD 175
+ A + T +T HY+ +F P G P G+ +D
Sbjct: 122 HQSLGINLLAGAADGT------ATAVRDHYHHHQFF-PREQMFGGLDVPAGNNYD 169
BLAST of Lag0027627 vs. ExPASy Swiss-Prot
Match:
Q32SG3 (LOB domain-containing protein 6 OS=Zea mays OX=4577 GN=LBD6 PE=1 SV=1)
HSP 1 Score: 164.1 bits (414), Expect = 1.5e-39
Identity = 80/145 (55.17%), Postives = 104/145 (71.72%), Query Frame = 0
Query: 7 SNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDA 66
+ SPCAACKFLRRKC PDCVFAPYFPP+ PQKF +VH++FGASNV+KLLNE+ P QREDA
Sbjct: 30 TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDA 89
Query: 67 VNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPAPSPSPS 126
VNSLAYEA+ R++DPVYGCVG ISILQ + +LQ++L +L +Y + + S +P+
Sbjct: 90 VNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQAAAAASASTAPT 149
Query: 127 SSSQYARRSSSTSHEGSSSTTSYGH 152
A + G+ + + GH
Sbjct: 150 GPQAMAEFIGNAMPNGAHNFINIGH 174
BLAST of Lag0027627 vs. ExPASy Swiss-Prot
Match:
A1YKY7 (Protein IAL1 OS=Zea mays OX=4577 PE=2 SV=1)
HSP 1 Score: 160.6 bits (405), Expect = 1.6e-38
Identity = 77/138 (55.80%), Postives = 100/138 (72.46%), Query Frame = 0
Query: 7 SNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDA 66
+ SPCAACKFLRRKC PDCVFAPYFPP+ PQKF VH++FGASNV+KL+NE+ P QREDA
Sbjct: 30 TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVRVHRVFGASNVTKLMNEIHPLQREDA 89
Query: 67 VNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPAPSPSPS 126
+NSLAYEA+ R++DPVYGCVG ISILQ + +LQ++L +L +Y + + S +P+
Sbjct: 90 MNSLAYEADMRIRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQAAAAASASTAPT 149
Query: 127 SSSQYARRSSSTSHEGSS 145
A S G++
Sbjct: 150 GPQAMAEFIGSAMPNGAA 167
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_011652293.1 | 1.6e-91 | 97.22 | LOB domain-containing protein 25 isoform X2 [Cucumis sativus] >KAE8651263.1 hypo... | [more] |
XP_004141196.1 | 1.6e-91 | 97.22 | LOB domain-containing protein 25 isoform X1 [Cucumis sativus] | [more] |
XP_008443563.1 | 3.6e-91 | 96.67 | PREDICTED: LOB domain-containing protein 25-like [Cucumis melo] >KAA0053633.1 LO... | [more] |
XP_022152200.1 | 3.6e-91 | 95.56 | LOB domain-containing protein 25-like [Momordica charantia] | [more] |
XP_038905774.1 | 8.0e-91 | 96.67 | LOB domain-containing protein 25-like [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
Q8L8Q3 | 1.3e-51 | 84.68 | LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 S... | [more] |
Q9FML4 | 6.6e-48 | 58.33 | Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=... | [more] |
O04479 | 6.7e-40 | 52.00 | Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1 | [more] |
Q32SG3 | 1.5e-39 | 55.17 | LOB domain-containing protein 6 OS=Zea mays OX=4577 GN=LBD6 PE=1 SV=1 | [more] |
A1YKY7 | 1.6e-38 | 55.80 | Protein IAL1 OS=Zea mays OX=4577 PE=2 SV=1 | [more] |