Lag0027401 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0027401
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein FAR1-RELATED SEQUENCE 4-like
Location	chr8: 190765 .. 191963 (-)
RNA-Seq Expression	Lag0027401
Synteny	Lag0027401

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACGTGTATGGGTATGTTTTGGAGGTTTGTGGAATGAGATTGGAAAAAAATATGAAGGTGGAGTGTTGAGAGGGTTTGATGTAGACACTAACATTATGTACGACCAGTTTTTAGGGTGTGTGTATGAAATAAGTGAGATAAATTCAGACGAGTTCTATATGGTAATTAGATGCATAATCCAATTAAGGTCGAAAGCCCCTGCATTCGTTATAAGAAATGATGTTGACCTTCAAACTTTTTTGACTTGGGGGAAGTGTCCTTAATACCACTGTACATATCCACTGTGCCAAAAATATCGCCTAACCAAGGTTTCCGGCCAAATTTCATTCAACATATGACCCAAGAAATTCCATATATGCATCCATGTCCATCCATGGCTACATCTTTTCCTTATTATTTAGGTCAAGAAATTCCATCAACATCGACCATGTCCCACTTACATCAAATCCTAGTGTGCCACCATCACTTACCCCATTGTCCAGTAATGTAGTGACATACAACCTAGGGATGATGCAGACCCTGTTACTCATGAACATGCTGACGTCGATGGTGGGGTCCACGATTGGGAAGATGATGGATTGGATGCACACTCTAATAGTGATGGTGGAGATGGTGGAGATGGTGAAGATGAAGAAGAAGAGATCAATGAAGTGGGTGATATGCAACAAGTGAGAATGAATGTTCCCACTACTGAAGTTCCACCACCTCAAGAACTCCGAACAATCCTCCACTTTCGATTGAAGCACCCCATGTGTCATATCAATCCTGGTAAGTCAATCATCATGCAAGGTCAACCTTCCTCACAAGATATAGAAGTTGGGGATATTTTTTTATCAAGAAAAGATTTATACATGAGATTGTATGTTATAGCGATGAGAAACAATTTCGAGTTTAGGGTTAAAAAGTCGAACCCAAAACTTTTCACATGCAGATGTGTTATCAAGGAATGTAAATGGAGAGTGGGGTTGTTCGTTTGAAGGGGTGTGATGCATTTAAAATTTCAAAGTATAGTAATACTCATAACTGCAAGCATGAAATGTTGTCACACGATCATTGTAATACTAAAAGTTGGGTTATAGGGCGCTTAATTAAGTCAAGGTTTGGAGATGTTAGTCGTACGTATAACCCAAAAGATATTGTAAAAGATATGCGACAGGAGTTTGGTGTGAGCTTGACTTATGGCAAAGGTTGCTAG

mRNA sequence

ATGTCACGTGTATGGGTATGTTTTGGAGGTTTGTGGAATGAGATTGGAAAAAAATATGAAGGTGGAGTGTTGAGAGGGTTTGATGTAGACACTAACATTATGTACGACCAGTTTTTAGGTGACATACAACCTAGGGATGATGCAGACCCTGTTACTCATGAACATGCTGACGTCGATGGTGGGGTCCACGATTGGGAAGATGATGGATTGGATGCACACTCTAATAGTGATGGTGGAGATGGTGGAGATGGTGAAGATGAAGAAGAAGAGATCAATGAAGTGGGTGATATGCAACAAGTGAGAATGAATGTTCCCACTACTGAAGTTCCACCACCTCAAGAACTCCGAACAATCCTCCACTTTCGATTGAAGCACCCCATGTGTCATATCAATCCTGGGCGCTTAATTAAGTCAAGGTTTGGAGATGTTAGTCGTACGTATAACCCAAAAGATATTGTAAAAGATATGCGACAGGAGTTTGGTGTGAGCTTGACTTATGGCAAAGGTTGCTAG

Coding sequence (CDS)

ATGTCACGTGTATGGGTATGTTTTGGAGGTTTGTGGAATGAGATTGGAAAAAAATATGAAGGTGGAGTGTTGAGAGGGTTTGATGTAGACACTAACATTATGTACGACCAGTTTTTAGGTGACATACAACCTAGGGATGATGCAGACCCTGTTACTCATGAACATGCTGACGTCGATGGTGGGGTCCACGATTGGGAAGATGATGGATTGGATGCACACTCTAATAGTGATGGTGGAGATGGTGGAGATGGTGAAGATGAAGAAGAAGAGATCAATGAAGTGGGTGATATGCAACAAGTGAGAATGAATGTTCCCACTACTGAAGTTCCACCACCTCAAGAACTCCGAACAATCCTCCACTTTCGATTGAAGCACCCCATGTGTCATATCAATCCTGGGCGCTTAATTAAGTCAAGGTTTGGAGATGTTAGTCGTACGTATAACCCAAAAGATATTGTAAAAGATATGCGACAGGAGTTTGGTGTGAGCTTGACTTATGGCAAAGGTTGCTAG

Protein sequence

MSRVWVCFGGLWNEIGKKYEGGVLRGFDVDTNIMYDQFLGDIQPRDDADPVTHEHADVDGGVHDWEDDGLDAHSNSDGGDGGDGEDEEEEINEVGDMQQVRMNVPTTEVPPPQELRTILHFRLKHPMCHINPGRLIKSRFGDVSRTYNPKDIVKDMRQEFGVSLTYGKGC

Homology

[Close]

BLAST of Lag0027401 vs. NCBI nr
Match: XP_038882416.1 (protein FAR1-RELATED SEQUENCE 8-like [Benincasa hispida])

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-04
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 133 GRLIKSRFGDVSRTYNPKDIVKDMRQEFGVSLTYGK 169
           G LI S+F D+SR+Y PKDIVKD++QE+GVSL+Y K
Sbjct: 88  GHLISSKFEDISRSYKPKDIVKDIKQEYGVSLSYDK 123

[Close]

BLAST of Lag0027401 vs. NCBI nr
Match: XP_022153146.1 (uncharacterized protein LOC111020715 [Momordica charantia])

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-04
Identity = 22/36 (61.11%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 133 GRLIKSRFGDVSRTYNPKDIVKDMRQEFGVSLTYGK 169
           G L++++F DVSRTY PKDI++DMR+E+GV+L+Y K
Sbjct: 161 GHLVQAKFTDVSRTYRPKDIIQDMRKEYGVNLSYDK 196

[Close]

BLAST of Lag0027401 vs. NCBI nr
Match: XP_022148135.1 (uncharacterized protein LOC111016888 [Momordica charantia])

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-04
Identity = 22/36 (61.11%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 133 GRLIKSRFGDVSRTYNPKDIVKDMRQEFGVSLTYGK 169
           G L++++F DVSRTY PKDI++DMR+E+GV+L+Y K
Sbjct: 117 GHLVQAKFTDVSRTYRPKDIIQDMRKEYGVNLSYDK 152

[Close]

BLAST of Lag0027401 vs. NCBI nr
Match: XP_022153200.1 (uncharacterized protein LOC111020756 [Momordica charantia])

HSP 1 Score: 55.1 bits (131), Expect = 7.0e-04
Identity = 21/36 (58.33%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 133 GRLIKSRFGDVSRTYNPKDIVKDMRQEFGVSLTYGK 169
           G L++ +F DVSRTY PKDI++DMR+E+GV+L+Y +
Sbjct: 70  GHLVQEKFTDVSRTYRPKDIIQDMRKEYGVNLSYDR 105

[Close]

BLAST of Lag0027401 vs. NCBI nr
Match: XP_022142677.1 (uncharacterized protein LOC111012733 [Momordica charantia])

HSP 1 Score: 55.1 bits (131), Expect = 7.0e-04
Identity = 21/36 (58.33%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 133 GRLIKSRFGDVSRTYNPKDIVKDMRQEFGVSLTYGK 169
           G L++S+F DVSRTY PKDI++D+R+E+GV+++Y K
Sbjct: 129 GHLVQSKFTDVSRTYRPKDIMQDIREEYGVNMSYDK 164

The following BLAST results are available for this feature:

BLAST of Lag0027401 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882416.1	1.1e-04	66.67	protein FAR1-RELATED SEQUENCE 8-like [Benincasa hispida]	[more]
XP_022153146.1	2.4e-04	61.11	uncharacterized protein LOC111020715 [Momordica charantia]	[more]
XP_022148135.1	2.4e-04	61.11	uncharacterized protein LOC111016888 [Momordica charantia]	[more]
XP_022153200.1	7.0e-04	58.33	uncharacterized protein LOC111020756 [Momordica charantia]	[more]
XP_022142677.1	7.0e-04	58.33	uncharacterized protein LOC111012733 [Momordica charantia]	[more]

BLAST of Lag0027401 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0027401.1	Lag0027401.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding