Lag0027349 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0027349
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionPPR_long domain-containing protein
Locationchr10: 46869031 .. 46869396 (-)
RNA-Seq ExpressionLag0027349
SyntenyLag0027349
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGTGGTTAAGAAATTTGGGGATGAACACAGCAACTTGTTGGACCAATATGAGAGACTGAGCTTTGAAGCACGACTAAACCAGGCGATGCTGGGGCGGAGTCTTTCGGAGCCGAAGACAATGAGGTCTCAAACTCAACTTACTGGCTCAGGCTCTGGCTCAGTTCGAGTACCATACTTGGTAACAACAACAACTACGCATCAGCCTAGAAAAGGACGCCGTGGATCCACCTTCAACTTCAACAAGATTATCAACAAGTTACTCAAACCCATTTTGGAGAGAAAGAGTAGGGCAAAGAAGGAACTTCCAGATTTCAAAAACCCCATGTCTTGGAAAGCCTTCAGTAAATCCATGCGCAATTGA

mRNA sequence

ATGGCAGTGGTTAAGAAATTTGGGGATGAACACAGCAACTTGTTGGACCAATATGAGAGACTGAGCTTTGAAGCACGACTAAACCAGGCGATGCTGGGGCGGAGTCTTTCGGAGCCGAAGACAATGAGGTCTCAAACTCAACTTACTGGCTCAGGCTCTGGCTCAGTTCGAGTACCATACTTGGTAACAACAACAACTACGCATCAGCCTAGAAAAGGACGCCGTGGATCCACCTTCAACTTCAACAAGATTATCAACAAGTTACTCAAACCCATTTTGGAGAGAAAGAGTAGGGCAAAGAAGGAACTTCCAGATTTCAAAAACCCCATGTCTTGGAAAGCCTTCAGTAAATCCATGCGCAATTGA

Coding sequence (CDS)

ATGGCAGTGGTTAAGAAATTTGGGGATGAACACAGCAACTTGTTGGACCAATATGAGAGACTGAGCTTTGAAGCACGACTAAACCAGGCGATGCTGGGGCGGAGTCTTTCGGAGCCGAAGACAATGAGGTCTCAAACTCAACTTACTGGCTCAGGCTCTGGCTCAGTTCGAGTACCATACTTGGTAACAACAACAACTACGCATCAGCCTAGAAAAGGACGCCGTGGATCCACCTTCAACTTCAACAAGATTATCAACAAGTTACTCAAACCCATTTTGGAGAGAAAGAGTAGGGCAAAGAAGGAACTTCCAGATTTCAAAAACCCCATGTCTTGGAAAGCCTTCAGTAAATCCATGCGCAATTGA

Protein sequence

MAVVKKFGDEHSNLLDQYERLSFEARLNQAMLGRSLSEPKTMRSQTQLTGSGSGSVRVPYLVTTTTTHQPRKGRRGSTFNFNKIINKLLKPILERKSRAKKELPDFKNPMSWKAFSKSMRN
Homology
BLAST of Lag0027349 vs. NCBI nr
Match: KAG6580428.1 (hypothetical protein SDJN03_20430, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 180.3 bits (456), Expect = 1.0e-41
Identity = 100/124 (80.65%), Postives = 109/124 (87.90%), Query Frame = 0

Query: 1   MAVVKKFGDEHSNLLDQYERLSFEARLNQAMLGRSLSEPKTMRSQTQLTG--SGSGSVRV 60
           MAVVKKFGDEHSNLLDQYER SFEARLNQA+LGRSLSEP+T+RSQ Q     S SGSVR+
Sbjct: 1   MAVVKKFGDEHSNLLDQYERRSFEARLNQAILGRSLSEPRTLRSQQQPQPQLSASGSVRL 60

Query: 61  PYLVTTTTTHQPRKGRRGSTFNFNKIINKLLKPILER--KSRAKKELPDFKNPMSWKAFS 120
           P LV TT+++QPRKG RGSTFNFNKIINKLLKPIL R  KSRAKKELPDF+NP+SWKA S
Sbjct: 61  PCLV-TTSSNQPRKGGRGSTFNFNKIINKLLKPILGRKSKSRAKKELPDFRNPVSWKALS 120

BLAST of Lag0027349 vs. NCBI nr
Match: OAY41638.1 (hypothetical protein MANES_09G117900v8 [Manihot esculenta])

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-22
Identity = 68/118 (57.63%), Postives = 84/118 (71.19%), Query Frame = 0

Query: 3   VVKKFGDEHSNLLDQYERLSFEARLNQAMLGRSLSEPKTMRSQTQLTGSGSGSVRVPYLV 62
           ++K+FGDE S LLDQ+ERL+FE +LNQA+LGRSLSEP   RS+ Q+  +G      P LV
Sbjct: 7   ILKRFGDEQSTLLDQFERLTFEVQLNQAILGRSLSEPSVGRSRFQVPLNGEDP---PALV 66

Query: 63  TTTTTHQPRKGRRGSTFNFNKIINKLLKPILERKSRAKKELPDFKNPMSWKAFSKSMR 121
             T   Q R+ RRGS   FNK++ KLLKPI  RK  AKKE+ D KNP SWKAFS+S+R
Sbjct: 67  --TQVRQGRRRRRGS--GFNKVLMKLLKPIFRRKDGAKKEVLDPKNPKSWKAFSRSLR 117

BLAST of Lag0027349 vs. NCBI nr
Match: XP_042940573.1 (uncharacterized protein LOC122275540 isoform X1 [Carya illinoinensis] >KAG6643576.1 hypothetical protein CIPAW_09G221400 [Carya illinoinensis])

HSP 1 Score: 111.3 bits (277), Expect = 5.9e-21
Identity = 64/121 (52.89%), Postives = 81/121 (66.94%), Query Frame = 0

Query: 3   VVKKFGDEHSNLLDQYERLSFEARLNQAMLGRSLSEPKTMRSQTQLTGSGSGSVRVPYLV 62
           V++KFGDE S LLD++ERLSFE +LNQA+LGRS SEP   R Q  L G G      P   
Sbjct: 135 VLRKFGDEQSTLLDRFERLSFEVQLNQAILGRSFSEPSVARFQAPLFGQGPAPPPPP--- 194

Query: 63  TTTTTHQPRKGRRGSTFNFNKIINKLLKPILERKSR---AKKELPDFKNPMSWKAFSKSM 121
                 Q ++GRRGS   F+K++ K LKPIL RKSR   ++ +LPD +NP SWKAFS+S+
Sbjct: 195 ----LRQAQRGRRGSA--FHKVLKKFLKPILGRKSRGGMSEVQLPDPRNPRSWKAFSRSL 246

BLAST of Lag0027349 vs. NCBI nr
Match: XP_042940575.1 (uncharacterized protein LOC122275540 isoform X3 [Carya illinoinensis])

HSP 1 Score: 111.3 bits (277), Expect = 5.9e-21
Identity = 64/121 (52.89%), Postives = 81/121 (66.94%), Query Frame = 0

Query: 3   VVKKFGDEHSNLLDQYERLSFEARLNQAMLGRSLSEPKTMRSQTQLTGSGSGSVRVPYLV 62
           V++KFGDE S LLD++ERLSFE +LNQA+LGRS SEP   R Q  L G G      P   
Sbjct: 75  VLRKFGDEQSTLLDRFERLSFEVQLNQAILGRSFSEPSVARFQAPLFGQGPAPPPPP--- 134

Query: 63  TTTTTHQPRKGRRGSTFNFNKIINKLLKPILERKSR---AKKELPDFKNPMSWKAFSKSM 121
                 Q ++GRRGS   F+K++ K LKPIL RKSR   ++ +LPD +NP SWKAFS+S+
Sbjct: 135 ----LRQAQRGRRGSA--FHKVLKKFLKPILGRKSRGGMSEVQLPDPRNPRSWKAFSRSL 186

BLAST of Lag0027349 vs. NCBI nr
Match: XP_042940574.1 (uncharacterized protein LOC122275540 isoform X2 [Carya illinoinensis])

HSP 1 Score: 111.3 bits (277), Expect = 5.9e-21
Identity = 64/121 (52.89%), Postives = 81/121 (66.94%), Query Frame = 0

Query: 3   VVKKFGDEHSNLLDQYERLSFEARLNQAMLGRSLSEPKTMRSQTQLTGSGSGSVRVPYLV 62
           V++KFGDE S LLD++ERLSFE +LNQA+LGRS SEP   R Q  L G G      P   
Sbjct: 127 VLRKFGDEQSTLLDRFERLSFEVQLNQAILGRSFSEPSVARFQAPLFGQGPAPPPPP--- 186

Query: 63  TTTTTHQPRKGRRGSTFNFNKIINKLLKPILERKSR---AKKELPDFKNPMSWKAFSKSM 121
                 Q ++GRRGS   F+K++ K LKPIL RKSR   ++ +LPD +NP SWKAFS+S+
Sbjct: 187 ----LRQAQRGRRGSA--FHKVLKKFLKPILGRKSRGGMSEVQLPDPRNPRSWKAFSRSL 238

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6580428.11.0e-4180.65hypothetical protein SDJN03_20430, partial [Cucurbita argyrosperma subsp. sorori... [more]
OAY41638.11.1e-2257.63hypothetical protein MANES_09G117900v8 [Manihot esculenta][more]
XP_042940573.15.9e-2152.89uncharacterized protein LOC122275540 isoform X1 [Carya illinoinensis] >KAG664357... [more]
XP_042940575.15.9e-2152.89uncharacterized protein LOC122275540 isoform X3 [Carya illinoinensis][more]
XP_042940574.15.9e-2152.89uncharacterized protein LOC122275540 isoform X2 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..59
NoneNo IPR availablePANTHERPTHR48196FAMILY NOT NAMEDcoord: 2..120

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0027349.1Lag0027349.1mRNA