Lag0027254 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0027254
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	chr10: 46217220 .. 46220392 (-)
RNA-Seq Expression	Lag0027254
Synteny	Lag0027254

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGTGGCCTTAAAGGATTTGCACCTGATGCTCTTCCGTGTAAATCACGGACATTTGTCCCATTCAAAGCCAATTTCCCGACTGGAACAGGGTTTTCAATTGGATTTTATTCGGTTTGTCCACGACTATAATGATTGAAAATTTGGAATTGGGATTTTCACTTTTCTTTTAGGGGCTGGAGCAGAGCAAGAAAGAGGGAGAATCAAGGAGTATGAAAGCCCAAATCTAAGGTCAGCCCACTGTTCGTTACCCCTAACCTACCAACTCTGTGTTAATATACCTTTAATTGACCTACTACGGGGTTCTCGCTGTCCGATCAGCGAGTCGGGGTCTAGGGGCGAAGTGGTCGGTGGGGGTTCGGGACAACACCCCTAAGCTAAATTAACTATAGAGATTAGATATGTTTTTTCGTTTTGGGCTTTTATTTTGGGCTTATTATCTTAGGAGTAAGAGTGGTGTCATATATAAACTCTTTAACCTATTTTACCCTAATCTCTGTAATCTGTCTATGTTTTACTCCTTATAATAAAATCGTTCTCTCCTTCTGTCTGTGGTCGTAGCTAACACACCGTTAGTGAATCACGTAAATTTGTGTGTTGTTTTCTTCGTCCTTTCATTCATGTTAGGTTAATTGAAGTGAAATTAACAACGTAGAAAAGAAAAGATTTGGAGGCATAAATTTCAAGAAGTTGCACAGGAAGAAAATTTGCTGCACAAATCGGGAGTAATAGAATGTCAACCAAAAGAAACACGAAGAAAGCAACGTGAGTTCTCTTTGGTCTCTTGTGATCTTTCTTTGCAGTTTGCACTCTCTTTTCTTGGAAAAATAACTCATGTTTCCTCATCGATTTTGCTTGTAGTTATGGATATTGAAGAATTTCACATCTTTCTTTAGTAATTAGGGTAGGATGTCAACGTCATTAACCAACTATTAAATAACAAAATGAAGTACAAAAGCGTCGATCTAAGGGGGTTTAGTCCCAATGGTTTGGTTGAAATTAGAATTTAGTTTGTACAGTTTTTATACTAGAATTTTGTCTCTGGTTTGATAAAACTTGTTTAGATGGTCTCTCCCGTTTGATAAAATCCCTTTAGACAAGGGTCATAGAAAAAAGAATGAGTTCAATCCATGTGGTCACCTCGGATATTTAATATCCTAGGAGTTTTGGCAACGAAATATAGTAACGTAGAACGAGATAGGGAAAAAAAATCACAACAATGTAATTTAACTAATAATTAATTTATCCGATGATGTACTTATTATTATTCTCATAATTTTATGGCGTGGAGATGCTTTTAATCTCAGTCAGGCAGAGTGTTGTTATTTCTAGAATGTAAAAATTTTCATTCTTATTTTGTTATTATCCCCATAACTAATCACAACAATGTAGCGTCAAACGTGCCGCAATTTTTTTTTTTGTTTTTTTTTTTTTTGGATGTAGCTCGTTACTTCTAGAATATGAATTTTGTACATTCTTATTCTGTTTTATCCCAATCAAATATTGCAACACTGTAGCATCAAACGATATATTTTACTTTATTTAAATATTAAAGATATTATTTAAAAAAAGATTAAAGATATAACACAAGTACTATTACCGTTTATTAAAAAAATAAATAAATAAAAGACAGGAAATGCTAATATTAGAAAGGGAAAATTGTAAAAATCTATCGAAACTTTCAATTAGATGATGAATCCATCCTTTTAAATTTATGGTGAAATACACCAACGTTTCAATCAAAATCTTACAACTTAACATTGATGTAAAAGCCATGAATTTTGAACTTACAAAAAAAACATAATTTAAGTTAATATCACATAATTTCGTAAGTTTAGAGAGTTGTTTATGCAGTACTTGAGTGCCACTCAGATATAAATTTCATTTCATCTGAGATGAGAAAATCTTAATCTCTAAATTCCAATCAAGGAAATCAGATGGCGTGGGCTCTATATCCACGTGAAATCAAAAGATGCTATCCAGCCAGCCAAACAGAACAACCACAATCACAGCCATAGAAACACTATTTTCAATAGGCCCCAATGAAACCAGATAAGGCAAAGATAAGGCCCTCACACCTCAGACCTTCTCCCCCGTCAGATGGATACACTCTCTTCATCCAACGCCCACCATTTCCCCACCAAACAGCCACCAAATTGTGGAAATTCCCCATATAACACCTCCAAATTCCAATCACCATTACATCAACCTCCCATCTCCGCCATGGCAACCACCACAAACGCCGCCGCCGCCTCCTCCTTCATCGGAACCCGCCTCCCCGTCGCCCCATCCGGGTCGGGTCGAGCGCAAGCCCGATTCTCATTTGGAAAAGGGAAACAAAAAGCCCACCGAAGAGATCGTCGAAGCCCAGCTCGGACCGCCCGCTCTGGTACCCGGGGCGGTGGCGCCGGAGTGGCTGGACGGGAGCTTGGTGGGGGACTATGGGTTCGACCCATTTGGGTTGGGGAAGCCGGCGGAGTACTTGCAGTTCGAGTTGGACTCGCTGGACCAGAACTTGGCGAAGAATGTGGCTGGCGATGTGATTGGGACTCGGTTCGAGAATGCGGATGTGAAATCGACGCCGTTTCAGCCGTACAGTGAGGTTTTTGGGTTGCAGAGGTTTCGTGAGTGCGAGCTCATCCATGGAAGGTGGGCTATGTTGGCTACGCTTGGTGCTCTCACTGTTGAATGGCTCACCGGTGTTACCTGGCAAGACGCCGGAAAGGTACGTAAATCTAAGTTTGTGGGGCTCACAATAGAGTGCTGTAATTGGTTAATAAGTTTGTAAATGTGTGTTTCAGGTAGAGCTGGTAGAAGGATCCTCATATCTTGGGCAGCCACTACCATTCTCAATATCAACATTGATATGGATCGAAGTTCTGGTAATTGGCTACATTGAGTTTCAACGAAACGCCGAGCTCGATCCCGAGAAGAGGCTTTACCCCGGGGGCAAGTACTTCGATCCCCTCGGCTTGGCAGCCGATCCCGAGAAGAAGGCGACGCTTCAATTGGCCGAGATCAAGCACGCTCGTCTCGCCATGGTTGCCTTCCTCGGCTTCGCTGTTCAGGCCGCTGCCACGGGCAAAGGCCCGCTCAATAACTGGGCAACCCATCTGAGCGACCCGCTCCACACCACCATTATTGACACATTCTTCTTTTCATCCTCTTGA

mRNA sequence

ATGACAAGTGGCCTTAAAGGATTTGCACCTGATGCTCTTCCGTGGGCTGGAGCAGAGCAAGAAAGAGGGAGAATCAAGGAGTATGAAAGCCCAAATCTAAGATGGATACACTCTCTTCATCCAACGCCCACCATTTCCCCACCAAACAGCCACCAAATTGTGGAAATTCCCCATATAACACCTCCAAATTCCAATCACCATTACATCAACCTCCCATCTCCGCCATGGCAACCACCACAAACGCCGCCGCCGCCTCCTCCTTCATCGGAACCCGCCTCCCCGTCGCCCCATCCGGGTCGGGTCGAGCGCAAGCCCGATTCTCATTTGGAAAAGGGAAACAAAAAGCCCACCGAAGAGATCGTCGAAGCCCAGCTCGGACCGCCCGCTCTGGTACCCGGGGCGGTGGCGCCGGAGTGGCTGGACGGGAGCTTGGTGGGGGACTATGGGTTCGACCCATTTGGGTTGGGGAAGCCGGCGGAGTACTTGCAGTTCGAGTTGGACTCGCTGGACCAGAACTTGGCGAAGAATGTGGCTGGCGATGTGATTGGGACTCGGTTCGAGAATGCGGATGTGAAATCGACGCCGTTTCAGCCGTACAGTGAGGTTTTTGGGTTGCAGAGGTTTCGTGAGTGCGAGCTCATCCATGGAAGGTGGGCTATGTTGGCTACGCTTGGTGCTCTCACTGTTGAATGGCTCACCGGTGTTACCTGGCAAGACGCCGGAAAGGTAGAGCTGGTAGAAGGATCCTCATATCTTGGGCAGCCACTACCATTCTCAATATCAACATTGATATGGATCGAAGTTCTGGTAATTGGCTACATTGAGTTTCAACGAAACGCCGAGCTCGATCCCGAGAAGAGGCTTTACCCCGGGGGCAAGTACTTCGATCCCCTCGGCTTGGCAGCCGATCCCGAGAAGAAGGCGACGCTTCAATTGGCCGAGATCAAGCACGCTCGTCTCGCCATGGTTGCCTTCCTCGGCTTCGCTGTTCAGGCCGCTGCCACGGGCAAAGGCCCGCTCAATAACTGGGCAACCCATCTGAGCGACCCGCTCCACACCACCATTATTGACACATTCTTCTTTTCATCCTCTTGA

Coding sequence (CDS)

ATGACAAGTGGCCTTAAAGGATTTGCACCTGATGCTCTTCCGTGGGCTGGAGCAGAGCAAGAAAGAGGGAGAATCAAGGAGTATGAAAGCCCAAATCTAAGATGGATACACTCTCTTCATCCAACGCCCACCATTTCCCCACCAAACAGCCACCAAATTGTGGAAATTCCCCATATAACACCTCCAAATTCCAATCACCATTACATCAACCTCCCATCTCCGCCATGGCAACCACCACAAACGCCGCCGCCGCCTCCTCCTTCATCGGAACCCGCCTCCCCGTCGCCCCATCCGGGTCGGGTCGAGCGCAAGCCCGATTCTCATTTGGAAAAGGGAAACAAAAAGCCCACCGAAGAGATCGTCGAAGCCCAGCTCGGACCGCCCGCTCTGGTACCCGGGGCGGTGGCGCCGGAGTGGCTGGACGGGAGCTTGGTGGGGGACTATGGGTTCGACCCATTTGGGTTGGGGAAGCCGGCGGAGTACTTGCAGTTCGAGTTGGACTCGCTGGACCAGAACTTGGCGAAGAATGTGGCTGGCGATGTGATTGGGACTCGGTTCGAGAATGCGGATGTGAAATCGACGCCGTTTCAGCCGTACAGTGAGGTTTTTGGGTTGCAGAGGTTTCGTGAGTGCGAGCTCATCCATGGAAGGTGGGCTATGTTGGCTACGCTTGGTGCTCTCACTGTTGAATGGCTCACCGGTGTTACCTGGCAAGACGCCGGAAAGGTAGAGCTGGTAGAAGGATCCTCATATCTTGGGCAGCCACTACCATTCTCAATATCAACATTGATATGGATCGAAGTTCTGGTAATTGGCTACATTGAGTTTCAACGAAACGCCGAGCTCGATCCCGAGAAGAGGCTTTACCCCGGGGGCAAGTACTTCGATCCCCTCGGCTTGGCAGCCGATCCCGAGAAGAAGGCGACGCTTCAATTGGCCGAGATCAAGCACGCTCGTCTCGCCATGGTTGCCTTCCTCGGCTTCGCTGTTCAGGCCGCTGCCACGGGCAAAGGCCCGCTCAATAACTGGGCAACCCATCTGAGCGACCCGCTCCACACCACCATTATTGACACATTCTTCTTTTCATCCTCTTGA

Protein sequence

MTSGLKGFAPDALPWAGAEQERGRIKEYESPNLRWIHSLHPTPTISPPNSHQIVEIPHITPPNSNHHYINLPSPPWQPPQTPPPPPPSSEPASPSPHPGRVERKPDSHLEKGNKKPTEEIVEAQLGPPALVPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFENADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFFFSSS

Homology

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BLAST of Lag0027254 vs. NCBI nr
Match: XP_038904041.1 (chlorophyll a-b binding protein CP29.1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 471.1 bits (1211), Expect = 8.8e-129
Identity = 239/278 (85.97%), Postives = 247/278 (88.85%), Query Frame = 0


Query: 91  PASPSPHPGRVER-----KPDSHLEKGNKKPTEEIVEAQLGPPALVPGAVAPEWLDGSLV 150
           P +P+   GRV+      K  S  +K +KKP  +        P   PGAVAPEWLDGSLV
Sbjct: 14  PVAPA-GSGRVQARFSFGKQKSPPKKSSKKPVSD-------RPLWFPGAVAPEWLDGSLV 73

Query: 151 GDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFENADVKSTPFQPYSEVFGL 210
           GDYGFDPFGLGKPAEYLQF+LDSLDQNLAKNVAGDVIGTRFENADVKSTPFQPYSEVFGL
Sbjct: 74  GDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNVAGDVIGTRFENADVKSTPFQPYSEVFGL 133

Query: 211 QRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIW 270
           QRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIW
Sbjct: 134 QRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIW 193

Query: 271 IEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLAEIKHARLAMVAF 330
           IEVLVIGYIEFQRN ELDPEKRLYPGGKYFDPLGLAADPEKK TLQLAEIKHARLAMVAF
Sbjct: 194 IEVLVIGYIEFQRNGELDPEKRLYPGGKYFDPLGLAADPEKKVTLQLAEIKHARLAMVAF 253

Query: 331 LGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFFFSS 364
           LGFAVQAAATGKGPLNNWATHLSDPLHTTIIDT F+SS
Sbjct: 254 LGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTLFYSS 283

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BLAST of Lag0027254 vs. NCBI nr
Match: XP_028072131.1 (chlorophyll a-b binding protein CP29.1, chloroplastic-like [Camellia sinensis])

HSP 1 Score: 463.8 bits (1192), Expect = 1.4e-126
Identity = 222/247 (89.88%), Postives = 233/247 (94.33%), Query Frame = 0


Query: 114 KKPTEEIVEAQLGPPALVPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNL 173
           K P ++I +     P   PGA APEWLDGSLVGDYGFDPFGLGKPAEYLQF+LDSLDQNL
Sbjct: 40  KAPPKKIAKQGFDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNL 99

Query: 174 AKNVAGDVIGTRFENADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLT 233
           AKN AGDVIGTRFE+ADVKSTPFQPY+EVFGLQRFRECELIHGRWAMLATLGALTVEWLT
Sbjct: 100 AKNSAGDVIGTRFESADVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT 159

Query: 234 GVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGK 293
           GVTWQDAGKVEL+EGSSYLGQPLPFSI+TLIWIEV+VIGYIEFQRNAELDPEKRLYPGGK
Sbjct: 160 GVTWQDAGKVELIEGSSYLGQPLPFSITTLIWIEVIVIGYIEFQRNAELDPEKRLYPGGK 219

Query: 294 YFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHT 353
           +FDPLGLA+DPEKKATLQLAEIKHARLAMVAFLGFAVQAA TGKGPLNNWATHLSDPLHT
Sbjct: 220 FFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHT 279

Query: 354 TIIDTFF 361
           TIIDTFF
Sbjct: 280 TIIDTFF 286

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BLAST of Lag0027254 vs. NCBI nr
Match: KAF3448904.1 (hypothetical protein FNV43_RR09620 [Rhamnella rubrinervis])

HSP 1 Score: 463.8 bits (1192), Expect = 1.4e-126
Identity = 228/261 (87.36%), Postives = 239/261 (91.57%), Query Frame = 0


Query: 99  GRVERKPDSHLEKGNKKPTEEIVEAQLGPPALVPGAVAPEWLDGSLVGDYGFDPFGLGKP 158
           GRV+ +     +K  + P +  V+     P   PGA APEWLDGSLVGDYGFDPFGLGKP
Sbjct: 26  GRVQARFGFGAKK--RPPKKTSVKPSNDRPLWYPGAQAPEWLDGSLVGDYGFDPFGLGKP 85

Query: 159 AEYLQFELDSLDQNLAKNVAGDVIGTRFENADVKSTPFQPYSEVFGLQRFRECELIHGRW 218
           AEYLQFELDSLDQNLAKN+AGDVIGTRFENADVKSTPFQPY+EVFGLQRFRECELIHGRW
Sbjct: 86  AEYLQFELDSLDQNLAKNLAGDVIGTRFENADVKSTPFQPYTEVFGLQRFRECELIHGRW 145

Query: 219 AMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR 278
           AMLATLGALTVEWLTG+TWQDAGKVELVEGSSYLGQPLPFSI+TLIWIEVLVIGYIEFQR
Sbjct: 146 AMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR 205

Query: 279 NAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKG 338
           NAELDPEKRLYPGGK+FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKG
Sbjct: 206 NAELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKG 265

Query: 339 PLNNWATHLSDPLHTTIIDTF 360
           PLNNWATHLSDPLHTTI DTF
Sbjct: 266 PLNNWATHLSDPLHTTIFDTF 284

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BLAST of Lag0027254 vs. NCBI nr
Match: KAB1224333.1 (Chlorophyll a-b binding protein CP29.2, chloroplastic [Morella rubra])

HSP 1 Score: 462.2 bits (1188), Expect = 4.1e-126
Identity = 227/261 (86.97%), Postives = 239/261 (91.57%), Query Frame = 0


Query: 99  GRVERKPDSHLEKGNKKPTEEIVEAQLGPPALVPGAVAPEWLDGSLVGDYGFDPFGLGKP 158
           GRV+ +     +K   +P +  V+     P   PGA APEWLDGSLVGDYGFDPFGLGKP
Sbjct: 26  GRVQARFGFGTKK--SRPRKASVKPSTDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKP 85

Query: 159 AEYLQFELDSLDQNLAKNVAGDVIGTRFENADVKSTPFQPYSEVFGLQRFRECELIHGRW 218
           AEYLQF+LDSLDQNLAKN+AGDVIGTRFE++DVKSTPFQPYSEVFGLQRFRECELIHGRW
Sbjct: 86  AEYLQFDLDSLDQNLAKNLAGDVIGTRFESSDVKSTPFQPYSEVFGLQRFRECELIHGRW 145

Query: 219 AMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR 278
           AMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSI+ LIWIEVLVIGYIEFQR
Sbjct: 146 AMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITALIWIEVLVIGYIEFQR 205

Query: 279 NAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKG 338
           NAELDPEKRLYPGGKYFDPLGLA+DPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKG
Sbjct: 206 NAELDPEKRLYPGGKYFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKG 265

Query: 339 PLNNWATHLSDPLHTTIIDTF 360
           PLNNWATHLSDPLHTTIIDTF
Sbjct: 266 PLNNWATHLSDPLHTTIIDTF 284

[Close]

BLAST of Lag0027254 vs. NCBI nr
Match: XP_028086654.1 (chlorophyll a-b binding protein CP29.2, chloroplastic-like [Camellia sinensis] >THG06463.1 hypothetical protein TEA_029107 [Camellia sinensis var. sinensis])

HSP 1 Score: 461.8 bits (1187), Expect = 5.3e-126
Identity = 220/247 (89.07%), Postives = 233/247 (94.33%), Query Frame = 0


Query: 114 KKPTEEIVEAQLGPPALVPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNL 173
           K P ++  +     P   PGA APEWLDG+LVGDYGFDPFGLGKPAEYLQFELDSLDQNL
Sbjct: 38  KAPAKKFAKPGSDRPLWFPGAKAPEWLDGTLVGDYGFDPFGLGKPAEYLQFELDSLDQNL 97

Query: 174 AKNVAGDVIGTRFENADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLT 233
           AKN+AGD+IGTRFE+ADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLT
Sbjct: 98  AKNLAGDIIGTRFESADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLT 157

Query: 234 GVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGK 293
           G+TWQDAGKVEL+EGSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELDPEKRLYPGGK
Sbjct: 158 GITWQDAGKVELLEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGK 217

Query: 294 YFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHT 353
           YFDPLGLA+DPEKKATLQLAEIKHARLAM+A LGFAVQAAATGKGPLNNWATHLSDPLHT
Sbjct: 218 YFDPLGLASDPEKKATLQLAEIKHARLAMIASLGFAVQAAATGKGPLNNWATHLSDPLHT 277

Query: 354 TIIDTFF 361
           TIIDTFF
Sbjct: 278 TIIDTFF 284

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BLAST of Lag0027254 vs. ExPASy Swiss-Prot
Match: Q07473 (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 1.4e-124
Identity = 213/232 (91.81%), Postives = 223/232 (96.12%), Query Frame = 0


Query: 128 PALVPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFE 187
           P   PGA++P+WLDGSLVGDYGFDPFGLGKPAEYLQF++DSLDQNLAKN+AGDVIGTR E
Sbjct: 56  PLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTE 115

Query: 188 NADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVE 247
            AD KSTPFQPYSEVFG+QRFRECELIHGRWAMLATLGAL+VEWLTGVTWQDAGKVELV+
Sbjct: 116 AADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVD 175

Query: 248 GSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKK 307
           GSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELD EKRLYPGGK+FDPLGLAADPEK 
Sbjct: 176 GSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKT 235

Query: 308 ATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 360
           A LQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF
Sbjct: 236 AQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 287

[Close]

BLAST of Lag0027254 vs. ExPASy Swiss-Prot
Match: Q9XF88 (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 5.3e-121
Identity = 213/249 (85.54%), Postives = 226/249 (90.76%), Query Frame = 0


Query: 112 GNKKPTEEIVEAQLGP-PALVPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLD 171
           G KK + +  +  +   P   PGA +PE+LDGSLVGDYGFDPFGLGKPAEYLQF+LDSLD
Sbjct: 36  GTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLD 95

Query: 172 QNLAKNVAGDVIGTRFENADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE 231
           QNLAKN+ G+VIGTR E  D KSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGA+TVE
Sbjct: 96  QNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVE 155

Query: 232 WLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYP 291
           WLTGVTWQDAGKVELV+GSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELD EKRLYP
Sbjct: 156 WLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYP 215

Query: 292 GGKYFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDP 351
           GGK+FDPLGLA+DP KKA LQLAEIKHARLAMV FLGFAVQAAATGKGPLNNWATHLSDP
Sbjct: 216 GGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDP 275

Query: 352 LHTTIIDTF 360
           LHTTIIDTF
Sbjct: 276 LHTTIIDTF 284

[Close]

BLAST of Lag0027254 vs. ExPASy Swiss-Prot
Match: Q9S7W1 (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.3 PE=2 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 6.4e-98
Identity = 183/255 (71.76%), Postives = 211/255 (82.75%), Query Frame = 0


Query: 94  PSPHPGRVE-RKPDSHLEKGNKKPTEEIVEAQLGPPALV--PGAVAPEWLDGSLVGDYGF 153
           P P  GRV+ R   S  +K    P ++  + Q     LV  PGA  PEWLDGS++GD GF
Sbjct: 20  PRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGF 79

Query: 154 DPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFENADVKSTPFQPYSEVFGLQRFRE 213
           DPFGLGKPAEYLQ++ D LDQNLAKNVAGD+IG   E++++K TPFQPY+EVFG+QRFRE
Sbjct: 80  DPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRE 139

Query: 214 CELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLV 273
           CELIHGRWAML TLGA+ VE LTG+ WQDAGKVELVEGSSYLGQPLPFS++TLIWIEVLV
Sbjct: 140 CELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLV 199

Query: 274 IGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAV 333
           +GYIEFQRN+ELDPEKR+YPGG YFDPLGLAADPEK  TL+LAEIKH+RLAMVAFL FA+
Sbjct: 200 VGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFAL 259

Query: 334 QAAATGKGPLNNWAT 346
           QAA TGKGP++  AT
Sbjct: 260 QAAFTGKGPVSFLAT 273

[Close]

BLAST of Lag0027254 vs. ExPASy Swiss-Prot
Match: Q93WD2 (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii OX=3055 GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 246.9 bits (629), Expect = 3.5e-64
Identity = 132/228 (57.89%), Postives = 159/228 (69.74%), Query Frame = 0


Query: 126 GPPALVPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTR 185
           G    +P    PEWLDGSL GD GFDP GL KP+E++   +D  DQN AKN  G V    
Sbjct: 49  GDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSV---- 108

Query: 186 FENADVKSTP--------FQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTW 245
              A V++TP          PYSEVFGL RFRECELIHGRWAMLA LGAL  E  TGV+W
Sbjct: 109 --EAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSW 168

Query: 246 QDAGKVELVEGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDP 305
            +AGKVEL +G+SY G  LPFSI+ LIWIEV+++G  EF RN+E +PEKR YPGG  FDP
Sbjct: 169 VEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGG-VFDP 228

Query: 306 LGLAADPEKKA-TLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWA 345
           L LA++ E++A  L+ AEIKHARLAMV+F G+ VQA +TG+G L + A
Sbjct: 229 LKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA 268

[Close]

BLAST of Lag0027254 vs. ExPASy Swiss-Prot
Match: Q01667 (Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA1 PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.8e-37
Identity = 96/232 (41.38%), Postives = 127/232 (54.74%), Query Frame = 0


Query: 131 VPGAVAPEWLDGSLVGDYGFDPFGLGK-PAEYLQFELDSLDQNLAKNVAGDVIGTRFENA 190
           +PG   P +LDGS  GD+GFDP GLG+ PA                              
Sbjct: 49  MPGEPRPAYLDGSAPGDFGFDPLGLGEVPA------------------------------ 108

Query: 191 DVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEG- 250
                          L+R++E ELIH RWAMLA  G L  E L    W  A +   + G 
Sbjct: 109 --------------NLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGG 168

Query: 251 -SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEK 310
            ++YLG P+P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG  FDPLG + DP+K
Sbjct: 169 QATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGA-FDPLGYSKDPKK 228

Query: 311 KATLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIID 358
              L++ EIK+ RLA++AF+GF VQ +A  G GPL N ATHL+DP H  I D
Sbjct: 229 LEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 235

[Close]

BLAST of Lag0027254 vs. ExPASy TrEMBL
Match: A0A6A1WHK8 (Chlorophyll a-b binding protein, chloroplastic OS=Morella rubra OX=262757 GN=CJ030_MR2G004236 PE=3 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 2.0e-126
Identity = 227/261 (86.97%), Postives = 239/261 (91.57%), Query Frame = 0


Query: 99  GRVERKPDSHLEKGNKKPTEEIVEAQLGPPALVPGAVAPEWLDGSLVGDYGFDPFGLGKP 158
           GRV+ +     +K   +P +  V+     P   PGA APEWLDGSLVGDYGFDPFGLGKP
Sbjct: 26  GRVQARFGFGTKK--SRPRKASVKPSTDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKP 85

Query: 159 AEYLQFELDSLDQNLAKNVAGDVIGTRFENADVKSTPFQPYSEVFGLQRFRECELIHGRW 218
           AEYLQF+LDSLDQNLAKN+AGDVIGTRFE++DVKSTPFQPYSEVFGLQRFRECELIHGRW
Sbjct: 86  AEYLQFDLDSLDQNLAKNLAGDVIGTRFESSDVKSTPFQPYSEVFGLQRFRECELIHGRW 145

Query: 219 AMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR 278
           AMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSI+ LIWIEVLVIGYIEFQR
Sbjct: 146 AMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITALIWIEVLVIGYIEFQR 205

Query: 279 NAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKG 338
           NAELDPEKRLYPGGKYFDPLGLA+DPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKG
Sbjct: 206 NAELDPEKRLYPGGKYFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKG 265

Query: 339 PLNNWATHLSDPLHTTIIDTF 360
           PLNNWATHLSDPLHTTIIDTF
Sbjct: 266 PLNNWATHLSDPLHTTIIDTF 284

[Close]

BLAST of Lag0027254 vs. ExPASy TrEMBL
Match: A0A4S4DT89 (Chlorophyll a-b binding protein, chloroplastic OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_029107 PE=3 SV=1)

HSP 1 Score: 461.8 bits (1187), Expect = 2.6e-126
Identity = 220/247 (89.07%), Postives = 233/247 (94.33%), Query Frame = 0


Query: 114 KKPTEEIVEAQLGPPALVPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNL 173
           K P ++  +     P   PGA APEWLDG+LVGDYGFDPFGLGKPAEYLQFELDSLDQNL
Sbjct: 38  KAPAKKFAKPGSDRPLWFPGAKAPEWLDGTLVGDYGFDPFGLGKPAEYLQFELDSLDQNL 97

Query: 174 AKNVAGDVIGTRFENADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLT 233
           AKN+AGD+IGTRFE+ADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLT
Sbjct: 98  AKNLAGDIIGTRFESADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLT 157

Query: 234 GVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGK 293
           G+TWQDAGKVEL+EGSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELDPEKRLYPGGK
Sbjct: 158 GITWQDAGKVELLEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGK 217

Query: 294 YFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHT 353
           YFDPLGLA+DPEKKATLQLAEIKHARLAM+A LGFAVQAAATGKGPLNNWATHLSDPLHT
Sbjct: 218 YFDPLGLASDPEKKATLQLAEIKHARLAMIASLGFAVQAAATGKGPLNNWATHLSDPLHT 277

Query: 354 TIIDTFF 361
           TIIDTFF
Sbjct: 278 TIIDTFF 284

[Close]

BLAST of Lag0027254 vs. ExPASy TrEMBL
Match: A0A061EQW6 (Chlorophyll a-b binding protein, chloroplastic OS=Theobroma cacao OX=3641 GN=TCM_021708 PE=3 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 9.8e-126
Identity = 221/248 (89.11%), Postives = 233/248 (93.95%), Query Frame = 0


Query: 112 GNKKPTEEIVEAQLGPPALVPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQ 171
           G KK   ++ +     P   PGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQ+ELDSLDQ
Sbjct: 35  GRKKAARKVSKPTSDRPLWYPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQYELDSLDQ 94

Query: 172 NLAKNVAGDVIGTRFENADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEW 231
           NLAKNVAG++IGTR E +DVK+TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEW
Sbjct: 95  NLAKNVAGEIIGTRTEVSDVKATPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEW 154

Query: 232 LTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPG 291
           LTGVTWQDAGKVELVEGSSYLGQPLPF+ISTLIWIEVL+IGYIEFQRNAELDPEKRLYPG
Sbjct: 155 LTGVTWQDAGKVELVEGSSYLGQPLPFNISTLIWIEVLLIGYIEFQRNAELDPEKRLYPG 214

Query: 292 GKYFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 351
           GK+FDPLGLA+DPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL
Sbjct: 215 GKFFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 274

Query: 352 HTTIIDTF 360
           HTTIIDTF
Sbjct: 275 HTTIIDTF 282

[Close]

BLAST of Lag0027254 vs. ExPASy TrEMBL
Match: A0A6A3A3K3 (Chlorophyll a-b binding protein, chloroplastic OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110610pilonHSYRG00133 PE=3 SV=1)

HSP 1 Score: 459.1 bits (1180), Expect = 1.7e-125
Identity = 223/251 (88.84%), Postives = 235/251 (93.63%), Query Frame = 0


Query: 112 GNKKPTEEIVEAQL---GPPALVPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDS 171
           G KK  +++ +++      P   PGAVAP+WLDGSLVGDYGFDPFGLGKPAEYLQ++LDS
Sbjct: 35  GGKKAAKKVTKSKAPTSDRPLWYPGAVAPDWLDGSLVGDYGFDPFGLGKPAEYLQYDLDS 94

Query: 172 LDQNLAKNVAGDVIGTRFENADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALT 231
           LDQNLAKNVAGD+IGTR E ADVK+TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALT
Sbjct: 95  LDQNLAKNVAGDIIGTRTEVADVKATPFQPYSEVFGLQRFRECELIHGRWAMLATLGALT 154

Query: 232 VEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRL 291
           VEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRL
Sbjct: 155 VEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRL 214

Query: 292 YPGGKYFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLS 351
           YPGGK+FDPLGLAADPEKKA LQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLS
Sbjct: 215 YPGGKFFDPLGLAADPEKKAILQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLS 274

Query: 352 DPLHTTIIDTF 360
           DPLHTTIIDTF
Sbjct: 275 DPLHTTIIDTF 285

[Close]

BLAST of Lag0027254 vs. ExPASy TrEMBL
Match: A0A1R3IR75 (Chlorophyll a-b binding protein, chloroplastic OS=Corchorus capsularis OX=210143 GN=CCACVL1_10433 PE=3 SV=1)

HSP 1 Score: 459.1 bits (1180), Expect = 1.7e-125
Identity = 223/251 (88.84%), Postives = 234/251 (93.23%), Query Frame = 0


Query: 112 GNKKPTEEIVEAQL---GPPALVPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDS 171
           G KK  +++ +++      P   PGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQ+ELDS
Sbjct: 36  GTKKAAKKVAKSKAPTSDRPLWYPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQYELDS 95

Query: 172 LDQNLAKNVAGDVIGTRFENADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALT 231
           LDQNLAKNVAGD+IGTR E ADVK+TPFQPY+EVFGLQRFRECELIHGRWAMLATLGALT
Sbjct: 96  LDQNLAKNVAGDIIGTRTEVADVKATPFQPYAEVFGLQRFRECELIHGRWAMLATLGALT 155

Query: 232 VEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRL 291
           VEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRL
Sbjct: 156 VEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRL 215

Query: 292 YPGGKYFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLS 351
           YPGG +FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAA TGKGPLNNWATHLS
Sbjct: 216 YPGGSFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLS 275

Query: 352 DPLHTTIIDTF 360
           DPLHTTIIDTF
Sbjct: 276 DPLHTTIIDTF 286

[Close]

BLAST of Lag0027254 vs. TAIR 10
Match: AT5G01530.1 (light harvesting complex photosystem II )

HSP 1 Score: 447.6 bits (1150), Expect = 9.7e-126
Identity = 213/232 (91.81%), Postives = 223/232 (96.12%), Query Frame = 0


Query: 128 PALVPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFE 187
           P   PGA++P+WLDGSLVGDYGFDPFGLGKPAEYLQF++DSLDQNLAKN+AGDVIGTR E
Sbjct: 56  PLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTE 115

Query: 188 NADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVE 247
            AD KSTPFQPYSEVFG+QRFRECELIHGRWAMLATLGAL+VEWLTGVTWQDAGKVELV+
Sbjct: 116 AADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVD 175

Query: 248 GSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKK 307
           GSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELD EKRLYPGGK+FDPLGLAADPEK 
Sbjct: 176 GSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKT 235

Query: 308 ATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 360
           A LQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF
Sbjct: 236 AQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 287

[Close]

BLAST of Lag0027254 vs. TAIR 10
Match: AT3G08940.2 (light harvesting complex photosystem II )

HSP 1 Score: 435.6 bits (1119), Expect = 3.8e-122
Identity = 213/249 (85.54%), Postives = 226/249 (90.76%), Query Frame = 0


Query: 112 GNKKPTEEIVEAQLGP-PALVPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLD 171
           G KK + +  +  +   P   PGA +PE+LDGSLVGDYGFDPFGLGKPAEYLQF+LDSLD
Sbjct: 36  GTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLD 95

Query: 172 QNLAKNVAGDVIGTRFENADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE 231
           QNLAKN+ G+VIGTR E  D KSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGA+TVE
Sbjct: 96  QNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVE 155

Query: 232 WLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYP 291
           WLTGVTWQDAGKVELV+GSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELD EKRLYP
Sbjct: 156 WLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYP 215

Query: 292 GGKYFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDP 351
           GGK+FDPLGLA+DP KKA LQLAEIKHARLAMV FLGFAVQAAATGKGPLNNWATHLSDP
Sbjct: 216 GGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDP 275

Query: 352 LHTTIIDTF 360
           LHTTIIDTF
Sbjct: 276 LHTTIIDTF 284

[Close]

BLAST of Lag0027254 vs. TAIR 10
Match: AT2G40100.1 (light harvesting complex photosystem II )

HSP 1 Score: 359.0 bits (920), Expect = 4.5e-99
Identity = 183/255 (71.76%), Postives = 211/255 (82.75%), Query Frame = 0


Query: 94  PSPHPGRVE-RKPDSHLEKGNKKPTEEIVEAQLGPPALV--PGAVAPEWLDGSLVGDYGF 153
           P P  GRV+ R   S  +K    P ++  + Q     LV  PGA  PEWLDGS++GD GF
Sbjct: 20  PRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGF 79

Query: 154 DPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFENADVKSTPFQPYSEVFGLQRFRE 213
           DPFGLGKPAEYLQ++ D LDQNLAKNVAGD+IG   E++++K TPFQPY+EVFG+QRFRE
Sbjct: 80  DPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRE 139

Query: 214 CELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLV 273
           CELIHGRWAML TLGA+ VE LTG+ WQDAGKVELVEGSSYLGQPLPFS++TLIWIEVLV
Sbjct: 140 CELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLV 199

Query: 274 IGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAV 333
           +GYIEFQRN+ELDPEKR+YPGG YFDPLGLAADPEK  TL+LAEIKH+RLAMVAFL FA+
Sbjct: 200 VGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFAL 259

Query: 334 QAAATGKGPLNNWAT 346
           QAA TGKGP++  AT
Sbjct: 260 QAAFTGKGPVSFLAT 273

[Close]

BLAST of Lag0027254 vs. TAIR 10
Match: AT3G08940.1 (light harvesting complex photosystem II )

HSP 1 Score: 219.2 bits (557), Expect = 5.6e-57
Identity = 109/148 (73.65%), Postives = 120/148 (81.08%), Query Frame = 0


Query: 112 GNKKPTEEIVEAQLGP-PALVPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLD 171
           G KK + +  +  +   P   PGA +PE+LDGSLVGDYGFDPFGLGKPAEYLQF+LDSLD
Sbjct: 36  GTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLD 95

Query: 172 QNLAKNVAGDVIGTRFENADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE 231
           QNLAKN+ G+VIGTR E  D KSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGA+TVE
Sbjct: 96  QNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVE 155

Query: 232 WLTGVTWQDAGKVELVEGSSYLGQPLPF 259
           WLTGVTWQDAGKV  +  SS L   L F
Sbjct: 156 WLTGVTWQDAGKVSPLFFSSLLRLCLAF 183

[Close]

BLAST of Lag0027254 vs. TAIR 10
Match: AT2G40100.2 (light harvesting complex photosystem II )

HSP 1 Score: 194.5 bits (493), Expect = 1.5e-49
Identity = 99/154 (64.29%), Postives = 117/154 (75.97%), Query Frame = 0


Query: 94  PSPHPGRVE-RKPDSHLEKGNKKPTEEIVEAQLGPPALV--PGAVAPEWLDGSLVGDYGF 153
           P P  GRV+ R   S  +K    P ++  + Q     LV  PGA  PEWLDGS++GD GF
Sbjct: 20  PRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGF 79

Query: 154 DPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFENADVKSTPFQPYSEVFGLQRFRE 213
           DPFGLGKPAEYLQ++ D LDQNLAKNVAGD+IG   E++++K TPFQPY+EVFG+QRFRE
Sbjct: 80  DPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRE 139

Query: 214 CELIHGRWAMLATLGALTVEWLTGVTWQDAGKVE 245
           CELIHGRWAML TLGA+ VE LTG+ WQDAGKVE
Sbjct: 140 CELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVE 173

The following BLAST results are available for this feature:

BLAST of Lag0027254 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904041.1	8.8e-129	85.97	chlorophyll a-b binding protein CP29.1, chloroplastic-like [Benincasa hispida]	[more]
XP_028072131.1	1.4e-126	89.88	chlorophyll a-b binding protein CP29.1, chloroplastic-like [Camellia sinensis]	[more]
KAF3448904.1	1.4e-126	87.36	hypothetical protein FNV43_RR09620 [Rhamnella rubrinervis]	[more]
KAB1224333.1	4.1e-126	86.97	Chlorophyll a-b binding protein CP29.2, chloroplastic [Morella rubra]	[more]
XP_028086654.1	5.3e-126	89.07	chlorophyll a-b binding protein CP29.2, chloroplastic-like [Camellia sinensis] >...	[more]

BLAST of Lag0027254 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q07473	1.4e-124	91.81	Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9XF88	5.3e-121	85.54	Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9S7W1	6.4e-98	71.76	Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q93WD2	3.5e-64	57.89	Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii OX=3055 GN=Lhc...	[more]
Q01667	4.8e-37	41.38	Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of Lag0027254 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A1WHK8	2.0e-126	86.97	Chlorophyll a-b binding protein, chloroplastic OS=Morella rubra OX=262757 GN=CJ0...	[more]
A0A4S4DT89	2.6e-126	89.07	Chlorophyll a-b binding protein, chloroplastic OS=Camellia sinensis var. sinensi...	[more]
A0A061EQW6	9.8e-126	89.11	Chlorophyll a-b binding protein, chloroplastic OS=Theobroma cacao OX=3641 GN=TCM...	[more]
A0A6A3A3K3	1.7e-125	88.84	Chlorophyll a-b binding protein, chloroplastic OS=Hibiscus syriacus OX=106335 GN...	[more]
A0A1R3IR75	1.7e-125	88.84	Chlorophyll a-b binding protein, chloroplastic OS=Corchorus capsularis OX=210143...	[more]

BLAST of Lag0027254 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01530.1	9.7e-126	91.81	light harvesting complex photosystem II	[more]
AT3G08940.2	3.8e-122	85.54	light harvesting complex photosystem II	[more]
AT2G40100.1	4.5e-99	71.76	light harvesting complex photosystem II	[more]
AT3G08940.1	5.6e-57	73.65	light harvesting complex photosystem II	[more]
AT2G40100.2	1.5e-49	64.29	light harvesting complex photosystem II	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 126..362 e-value: 1.9E-69 score: 235.6
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 136..332 e-value: 5.3E-51 score: 173.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..94
None	No IPR available	PANTHER	PTHR21649:SF71	CHLOROPHYLL A-B BINDING PROTEIN CP29.2, CHLOROPLASTIC	coord: 126..358
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 131..359
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 126..358

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0027254.1	Lag0027254.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding