Lag0027159 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0027159
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	cysteine-rich receptor-like protein kinase 42
Location	chr10: 45520224 .. 45520661 (-)
RNA-Seq Expression	Lag0027159
Synteny	Lag0027159

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCATTTTCATCCATTTCTCAAACCAAATTCCAATCCATGAAGTTTCTTTCTTCTTCCTCTTCTTCTTTGTTTCTCTCTTAGATCCCCGAATCTCAGAATCCATAAGCTTCTGCGGAGCCTCCAAGCCTCCGTCCAACTCCAGATTCATCTCGACCTTCATCGAAGAAATGGAAGCCATATTCGAGCTTCTCACAACTCGCAGTTGGACCACCCACTTCGTCAATTCCACTCCCCCAATGTTCGCCGTATCGCAATGCTTCAACAATCTCTCTCTCACCGATTGCCTTCTCTGCTACGCCGCCAGCCGCACCTCCTTGTCGCGGTGCGCCTACCCGCCGTCGCCGCCCGAATCTTCCTCGACAGATGCTTCCTCCTCTACGACAATTACAACTTCTACAAAGAATCCGCCGATTAGGTTAGGGATTCTGTGA

mRNA sequence

ATGGCTTCCATTTTCATCCATTTCTCAAACCAAATTCCAATCCATGAAGTTTCTTTCTTCTTCCTCTTCTTCTTTGTTTCTCTCTTAGATCCCCGAATCTCAGAATCCATAAGCTTCTGCGGAGCCTCCAAGCCTCCGTCCAACTCCAGATTCATCTCGACCTTCATCGAAGAAATGGAAGCCATATTCGAGCTTCTCACAACTCGCAGTTGGACCACCCACTTCGTCAATTCCACTCCCCCAATGTTCGCCGTATCGCAATGCTTCAACAATCTCTCTCTCACCGATTGCCTTCTCTGCTACGCCGCCAGCCGCACCTCCTTGTCGCGGTGCGCCTACCCGCCGTCGCCGCCCGAATCTTCCTCGACAGATGCTTCCTCCTCTACGACAATTACAACTTCTACAAAGAATCCGCCGATTAGGTTAGGGATTCTGTGA

Coding sequence (CDS)

ATGGCTTCCATTTTCATCCATTTCTCAAACCAAATTCCAATCCATGAAGTTTCTTTCTTCTTCCTCTTCTTCTTTGTTTCTCTCTTAGATCCCCGAATCTCAGAATCCATAAGCTTCTGCGGAGCCTCCAAGCCTCCGTCCAACTCCAGATTCATCTCGACCTTCATCGAAGAAATGGAAGCCATATTCGAGCTTCTCACAACTCGCAGTTGGACCACCCACTTCGTCAATTCCACTCCCCCAATGTTCGCCGTATCGCAATGCTTCAACAATCTCTCTCTCACCGATTGCCTTCTCTGCTACGCCGCCAGCCGCACCTCCTTGTCGCGGTGCGCCTACCCGCCGTCGCCGCCCGAATCTTCCTCGACAGATGCTTCCTCCTCTACGACAATTACAACTTCTACAAAGAATCCGCCGATTAGGTTAGGGATTCTGTGA

Protein sequence

MASIFIHFSNQIPIHEVSFFFLFFFVSLLDPRISESISFCGASKPPSNSRFISTFIEEMEAIFELLTTRSWTTHFVNSTPPMFAVSQCFNNLSLTDCLLCYAASRTSLSRCAYPPSPPESSSTDASSSTTITTSTKNPPIRLGIL

Homology

[Close]

BLAST of Lag0027159 vs. NCBI nr
Match: XP_038905701.1 (cysteine-rich receptor-like protein kinase 42 [Benincasa hispida])

HSP 1 Score: 173.7 bits (439), Expect = 1.2e-39
Identity = 92/115 (80.00%), Postives = 95/115 (82.61%), Query Frame = 0


Query: 1   MASIFIHFSNQIPIHEVSFFFLFFF----VSLLDPRISESISFCGASKPPSNSRFISTFI 60
           M SIFIH S+Q PIH V FFF FFF    VSL DPRISES S CG  KPP NSRFI TFI
Sbjct: 1   MDSIFIHSSHQFPIHGVPFFFFFFFFLISVSLSDPRISESGSICGTFKPPPNSRFIPTFI 60

Query: 61  EEMEAIFELLTTRSWTTHFVNSTPPMFAVSQCFNNLSLTDCLLCYAASRTSLSRC 112
           EEMEAI ELLTTRSWTTHFVNSTPPMFA+SQCFN+LS TDCLLCYAASRTSL RC
Sbjct: 61  EEMEAISELLTTRSWTTHFVNSTPPMFALSQCFNDLSHTDCLLCYAASRTSLPRC 115

[Close]

BLAST of Lag0027159 vs. NCBI nr
Match: XP_008443549.1 (PREDICTED: cysteine-rich receptor-like protein kinase 42 [Cucumis melo] >KAA0053648.1 cysteine-rich receptor-like protein kinase 42 [Cucumis melo var. makuwa])

HSP 1 Score: 169.5 bits (428), Expect = 2.2e-38
Identity = 90/114 (78.95%), Postives = 94/114 (82.46%), Query Frame = 0


Query: 1   MASIFIHFSNQIPIHEVS---FFFLFFFVSLLDPRISESISFCGASKPPSNSRFISTFIE 60
           MASIF H S Q PIH V    FFFLFF VSL DPRIS+S S CG  KPP +SRFI TFIE
Sbjct: 1   MASIFTHSSTQFPIHGVPFFFFFFLFFSVSLSDPRISQSGSICGTVKPPPSSRFIPTFIE 60

Query: 61  EMEAIFELLTTRSWTTHFVNSTPPMFAVSQCFNNLSLTDCLLCYAASRTSLSRC 112
           EMEAI ELLTTRSWTTHFVNSTPPMFA+SQCFN+LS TDCLLCYAASRTSL RC
Sbjct: 61  EMEAISELLTTRSWTTHFVNSTPPMFALSQCFNDLSHTDCLLCYAASRTSLPRC 114

[Close]

BLAST of Lag0027159 vs. NCBI nr
Match: TYK00819.1 (cysteine-rich receptor-like protein kinase 42 [Cucumis melo var. makuwa])

HSP 1 Score: 169.5 bits (428), Expect = 2.2e-38
Identity = 90/114 (78.95%), Postives = 94/114 (82.46%), Query Frame = 0


Query: 1   MASIFIHFSNQIPIHEVS---FFFLFFFVSLLDPRISESISFCGASKPPSNSRFISTFIE 60
           MASIF H S Q PIH V    FFFLFF VSL DPRIS+S S CG  KPP +SRFI TFIE
Sbjct: 1   MASIFTHSSTQFPIHGVPFFFFFFLFFSVSLSDPRISQSGSICGTVKPPPSSRFIPTFIE 60

Query: 61  EMEAIFELLTTRSWTTHFVNSTPPMFAVSQCFNNLSLTDCLLCYAASRTSLSRC 112
           EMEAI ELLTTRSWTTHFVNSTPPMFA+SQCFN+LS TDCLLCYAASRTSL RC
Sbjct: 61  EMEAISELLTTRSWTTHFVNSTPPMFALSQCFNDLSHTDCLLCYAASRTSLPRC 114

[Close]

BLAST of Lag0027159 vs. NCBI nr
Match: XP_022152135.1 (cysteine-rich receptor-like protein kinase 42 [Momordica charantia])

HSP 1 Score: 157.5 bits (397), Expect = 8.5e-35
Identity = 82/111 (73.87%), Postives = 91/111 (81.98%), Query Frame = 0


Query: 5   FIHFSNQIPIHEVSFFFLFFF----VSLLDPRISESISFCGASKPPSNSRFISTFIEEME 64
           FIHFSNQ   + VSFFF FFF    VSL DPRISES ++CG SK P  SRFI TFI EME
Sbjct: 26  FIHFSNQAQSYGVSFFFFFFFFFFSVSLSDPRISESGTYCGTSKAPPKSRFIPTFIAEME 85

Query: 65  AIFELLTTRSWTTHFVNSTPPMFAVSQCFNNLSLTDCLLCYAASRTSLSRC 112
           A+ ELLTTR+WTTHFVNSTPPMFA+SQCF++LS TDCLLCYAASRT+L RC
Sbjct: 86  AMSELLTTRNWTTHFVNSTPPMFALSQCFHDLSHTDCLLCYAASRTTLPRC 136

[Close]

BLAST of Lag0027159 vs. NCBI nr
Match: KAG7017773.1 (Cysteine-rich receptor-like protein kinase 42, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.8 bits (390), Expect = 5.5e-34
Identity = 82/111 (73.87%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MASIFIHFSNQIPIHEVSFFFLFFFVSLLDPRISESISFCGASKPPSNSRFISTFIEEME 60
           MASIFIH  +        FFFLFF VSL DPRISE+ S CG  KPP  SRFI TFIEEME
Sbjct: 1   MASIFIHGVSFFFFFFFFFFFLFFSVSLSDPRISEAGSICGTFKPPPKSRFIPTFIEEME 60

Query: 61  AIFELLTTRSWTTHFVNSTPPMFAVSQCFNNLSLTDCLLCYAASRTSLSRC 112
           AI ELLTTR+WTTHFVNSTPPMFA+SQCFN+LS  DCLLCYAASRT+L RC
Sbjct: 61  AISELLTTRNWTTHFVNSTPPMFALSQCFNDLSHNDCLLCYAASRTALPRC 111

[Close]

BLAST of Lag0027159 vs. ExPASy Swiss-Prot
Match: Q9FNE1 (Cysteine-rich receptor-like protein kinase 42 OS=Arabidopsis thaliana OX=3702 GN=CRK42 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.5e-13
Identity = 43/103 (41.75%), Postives = 63/103 (61.17%), Query Frame = 0


Query: 15  HEVSFFFLFFFVSLL-----DPRISESISFCGA-SKPPSNSRFISTFIEEMEAIFELLTT 74
           H V  F+ FFF+  L     D R + S  FCG  SK  ++  +I TF+E+M ++   LTT
Sbjct: 11  HYVIIFYSFFFLPFLSSSSDDQRTTVSGLFCGGRSKSSADPNYIPTFVEDMHSLSLKLTT 70

Query: 75  RSWTTHFVNSTPPMFAVSQCFNNLSLTDCLLCYAASRTSLSRC 112
           R + T  +NST  ++A+ QC ++LS +DC LCYA +RT + RC
Sbjct: 71  RRFATESLNSTTSIYALIQCHDDLSPSDCQLCYAIARTRIPRC 113

The following BLAST results are available for this feature:

BLAST of Lag0027159 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905701.1	1.2e-39	80.00	cysteine-rich receptor-like protein kinase 42 [Benincasa hispida]	[more]
XP_008443549.1	2.2e-38	78.95	PREDICTED: cysteine-rich receptor-like protein kinase 42 [Cucumis melo] >KAA0053...	[more]
TYK00819.1	2.2e-38	78.95	cysteine-rich receptor-like protein kinase 42 [Cucumis melo var. makuwa]	[more]
XP_022152135.1	8.5e-35	73.87	cysteine-rich receptor-like protein kinase 42 [Momordica charantia]	[more]
KAG7017773.1	5.5e-34	73.87	Cysteine-rich receptor-like protein kinase 42, partial [Cucurbita argyrosperma s...	[more]

BLAST of Lag0027159 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNE1	9.5e-13	41.75	Cysteine-rich receptor-like protein kinase 42 OS=Arabidopsis thaliana OX=3702 GN...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..145
None	No IPR available	PANTHER	PTHR47973	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	coord: 21..112
None	No IPR available	PANTHER	PTHR47973:SF8	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42	coord: 21..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0027159.1	Lag0027159.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity