Lag0026958 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0026958
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Phytosulfokine-beta
Location	chr10: 43737401 .. 43737874 (+)
RNA-Seq Expression	Lag0026958
Synteny	Lag0026958

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCAGAATTCCCATGGCTTCTTCTTCTTCTTCTTCTTCATTTTCCTTCTCTTTTCCCACACAGCCTCTGCCCGTTTCCCACCACCCAAACAAGGTAAAAGAAAACTAAAACCCACTTGGAAAAATCCTTCCTTTTTCACTCTAACTTCCATTTTCTCACTCTTTCTTTCTCTTTCCCTTTCATTTTCCCGGAAAATTTGCAGGTCTTGAAGATACCCACCACAAGCTCAGCCATGGAATGCTCCAAGTTCAACCAGATTCATGGCCAGATTTCCCCCATGTAATAAAAATCCTTCCTTTTTTTTTCTTTTTTCAATTTTCTTATTTGGATTTTAATGGGTTTTTTTTTTTTTTTAGATAATGGGAGGAAAAGAAAAGGGAGAAGAAGTTGATGAAGAAGAATGGGAGAAGAGAAGGATGATGTTACATGCGCACTTGGATTATGTCTACACACAAAATGAGAATCCTTGA

mRNA sequence

ATGAACCAGAATTCCCATGGCTTCTTCTTCTTCTTCTTCTTCATTTTCCTTCTCTTTTCCCACACAGCCTCTGCCCGTTTCCCACCACCCAAACAAGGTCTTGAAGATACCCACCACAAGCTCAGCCATGGAATGCTCCAAGTTCAACCAGATTCATGGCCAGATTTCCCCCATATAATGGGAGGAAAAGAAAAGGGAGAAGAAGTTGATGAAGAAGAATGGGAGAAGAGAAGGATGATGTTACATGCGCACTTGGATTATGTCTACACACAAAATGAGAATCCTTGA

Coding sequence (CDS)

ATGAACCAGAATTCCCATGGCTTCTTCTTCTTCTTCTTCTTCATTTTCCTTCTCTTTTCCCACACAGCCTCTGCCCGTTTCCCACCACCCAAACAAGGTCTTGAAGATACCCACCACAAGCTCAGCCATGGAATGCTCCAAGTTCAACCAGATTCATGGCCAGATTTCCCCCATATAATGGGAGGAAAAGAAAAGGGAGAAGAAGTTGATGAAGAAGAATGGGAGAAGAGAAGGATGATGTTACATGCGCACTTGGATTATGTCTACACACAAAATGAGAATCCTTGA

Protein sequence

MNQNSHGFFFFFFFIFLLFSHTASARFPPPKQGLEDTHHKLSHGMLQVQPDSWPDFPHIMGGKEKGEEVDEEEWEKRRMMLHAHLDYVYTQNENP

Homology

[Close]

BLAST of Lag0026958 vs. NCBI nr
Match: XP_038906014.1 (uncharacterized protein LOC120091917 [Benincasa hispida])

HSP 1 Score: 147.1 bits (370), Expect = 7.6e-32
Identity = 78/109 (71.56%), Postives = 85/109 (77.98%), Query Frame = 0


Query: 1   MNQNSHGFFFFFF----FIFLLF-SHTASARFPPPKQGLEDTHHKLSHGMLQVQPDSWPD 60
           MNQNSHGFFFFFF    FIFLLF SH+ASARFP  KQG+E+TH K+SHGM  VQ DSWPD
Sbjct: 1   MNQNSHGFFFFFFLSFLFIFLLFSSHSASARFPSSKQGIEETHKKISHGM--VQADSWPD 60

Query: 61  FPHIMGGKEKG---------EEVDEEEWEKRRMMLHAHLDYVYTQNENP 96
           FPHIMGG+EKG         EE +EEEWEK +MML AHLDYVYTQNE P
Sbjct: 61  FPHIMGGREKGGGGGGGGEEEEEEEEEWEKGKMMLEAHLDYVYTQNEKP 107

[Close]

BLAST of Lag0026958 vs. NCBI nr
Match: XP_022983167.1 (uncharacterized protein LOC111481800 [Cucurbita maxima])

HSP 1 Score: 140.6 bits (353), Expect = 7.1e-30
Identity = 70/95 (73.68%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 1  MNQNSHGFFFFFF---FIFLLFSHTASARFPPPKQGLEDTHHKLSHGMLQVQPDSWPDFP 60
          MNQ+SHGFFFFFF   FIFLLFS + SARFP  KQGL +TH KL+HG+  VQ DSW DFP
Sbjct: 1  MNQSSHGFFFFFFSFLFIFLLFSQSTSARFPAAKQGLGETHEKLTHGV--VQADSWADFP 60

Query: 61 HIMGGKEKGEEVDEEEWEKRRMMLHAHLDYVYTQN 93
          HI+GG+EKGEE +EE WEKR+MML AHLDYVYTQN
Sbjct: 61 HIIGGREKGEEEEEEGWEKRKMMLEAHLDYVYTQN 93

[Close]

BLAST of Lag0026958 vs. NCBI nr
Match: KAG6580671.1 (hypothetical protein SDJN03_20673, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.4 bits (350), Expect = 1.6e-29
Identity = 72/96 (75.00%), Postives = 80/96 (83.33%), Query Frame = 0


Query: 1  MNQNSHGFFFFFF----FIFLLFSHTASARFPPPKQGLEDTHHKLSHGMLQVQPDSWPDF 60
          MNQ+SHGFFFFFF    FIFLLFS +ASARFP  KQGL +TH KL+HG   VQ DSWPDF
Sbjct: 1  MNQSSHGFFFFFFFSFLFIFLLFSQSASARFPAAKQGLGETHEKLTHG--GVQADSWPDF 60

Query: 61 PHIMGGKEKGEEVDEEEWEKRRMMLHAHLDYVYTQN 93
          PHI+GG+EKGEE +EE WEKR+MML AHLDYVYTQN
Sbjct: 61 PHIIGGREKGEE-EEEGWEKRKMMLEAHLDYVYTQN 93

[Close]

BLAST of Lag0026958 vs. NCBI nr
Match: XP_022935155.1 (uncharacterized protein LOC111442110 [Cucurbita moschata])

HSP 1 Score: 139.4 bits (350), Expect = 1.6e-29
Identity = 72/96 (75.00%), Postives = 80/96 (83.33%), Query Frame = 0


Query: 1  MNQNSHGFFFFFF----FIFLLFSHTASARFPPPKQGLEDTHHKLSHGMLQVQPDSWPDF 60
          MNQ+SHGFFFFFF    FIFLLFS +ASARFP  KQGL +TH KL+HG   VQ DSWPDF
Sbjct: 1  MNQSSHGFFFFFFFSFLFIFLLFSQSASARFPAAKQGLGETHEKLTHG--GVQADSWPDF 60

Query: 61 PHIMGGKEKGEEVDEEEWEKRRMMLHAHLDYVYTQN 93
          PHI+GG+EKGEE +EE WEKR+MML AHLDYVYTQN
Sbjct: 61 PHIIGGREKGEE-EEEGWEKRKMMLEAHLDYVYTQN 93

[Close]

BLAST of Lag0026958 vs. NCBI nr
Match: XP_023528216.1 (putative phytosulfokines 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 136.3 bits (342), Expect = 1.3e-28
Identity = 70/96 (72.92%), Postives = 80/96 (83.33%), Query Frame = 0


Query: 1  MNQNSHGFFFFFF----FIFLLFSHTASARFPPPKQGLEDTHHKLSHGMLQVQPDSWPDF 60
          MNQ+SHGFFFFFF    FIFLLFS +ASARFP  KQGL +TH KL+HG+  VQ DSW DF
Sbjct: 1  MNQSSHGFFFFFFFSFLFIFLLFSQSASARFPAAKQGLGETHEKLTHGV--VQADSWADF 60

Query: 61 PHIMGGKEKGEEVDEEEWEKRRMMLHAHLDYVYTQN 93
          PH++GG+EKGEE +EE WEKR+MML AHLDYVYTQN
Sbjct: 61 PHMIGGREKGEE-EEEGWEKRKMMLEAHLDYVYTQN 93

The following BLAST results are available for this feature:

BLAST of Lag0026958 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906014.1	7.6e-32	71.56	uncharacterized protein LOC120091917 [Benincasa hispida]	[more]
XP_022983167.1	7.1e-30	73.68	uncharacterized protein LOC111481800 [Cucurbita maxima]	[more]
KAG6580671.1	1.6e-29	75.00	hypothetical protein SDJN03_20673, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022935155.1	1.6e-29	75.00	uncharacterized protein LOC111442110 [Cucurbita moschata]	[more]
XP_023528216.1	1.3e-28	72.92	putative phytosulfokines 6 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0026958 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009438	Phytosulfokine	PFAM	PF06404	PSK	coord: 14..94 e-value: 4.6E-12 score: 46.8
IPR009438	Phytosulfokine	PANTHER	PTHR33285	PHYTOSULFOKINES 3	coord: 1..95
None	No IPR available	PANTHER	PTHR33285:SF33	PHYTOSULFOKINES 6-RELATED	coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0026958.1	Lag0026958.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0008283	cell population proliferation
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016020	membrane
molecular_function	GO:0008083	growth factor activity