Lag0026868 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026868
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr10: 42740310 .. 42741311 (-)
RNA-Seq ExpressionLag0026868
SyntenyLag0026868
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGGAGTGCTTATAAATGGTGTCACTGAGGTGGCACGTGAAGATCTAAGTGAGAGGGGGGTGAGTTTCATAGTTTTGTTGGTACTGTAATTTGAGACTTGTTTGTTTTTACTGTCATGAAATTGTTGACAAAGATGTCATTCAAATAAGTGATGGATTGTATCATATTTGCACTGAAAGAGAGTGGGATTGTGCCCTTATCAAAAGTAAGCAACATGCAACATATGTTGTCAATCAAGCTGCTAGTGTGAGCTTTTACATAAGGGCCAAAAAAGAAGGTTTATTTTTATTTTATTTTATTTTTTATGTTATGAAAAACTTTAAATGAAGGAGTAGTGCACTAGAAACCCAAAAGTAAAAAGTCAAAATTGAGGTATTACAAATGAAAGCTAATACGAAGTTTCATAATTGTAAACGAATCCACTTTACTTTAGTTCTGGTCTTCAAATTATGCATGTGTAATTTGTATAAGTGATGTTATAAGAAGCAAGGTTCTTCAGTTAGATACATACATTGAGGTAAGTGCATTTAGCTCTCTCTTTGCTGTCTCTCGTTAATTACTTTTTTTTTTCCATTTACCTCTCTCTTTGATGTGTTTCCTTTATAGGCTGAAAAAGAAGTAGACAATATACATGCGGATGCATCAAAAGTTGTTTGTTCAAAAGAAGTTGTAGCCAAGGGTAAGATGCAAAGCTTTAACTTCATGATACATTAGGAATTGTTGTTTTAGATATGTATGTATACCAAAGAAATGAGGAAAACCCAAGCTAAAGGAATTACGAAAGGCTTCAATTCGATAAAAGTGAATTAAGAGGAGATGACAATTTACACCAAACGATAGCAATGAATTCCTTAATAATTGATGTTGTCTATTCCTATAGTCATTTTCTTGTGGTCTGAGTGTAAAATGTTTCTTGACAAGATGATGTTTCAGGAGCTGCAGATGAGCAAAGAGGACTTGAGGACGGTGCTCTAATAAAGTTGGAGCTGATGGCCTAG

mRNA sequence

ATGAGAGGAGTGCTTATAAATGGTGTCACTGAGGTGGCACGTGAAGATCTAAGTGAGAGGGGGGCTGAAAAAGAAGTAGACAATATACATGCGGATGCATCAAAAGTTGTTTGTTCAAAAGAAGTTGTAGCCAAGGGAGCTGCAGATGAGCAAAGAGGACTTGAGGACGGTGCTCTAATAAAGTTGGAGCTGATGGCCTAG

Coding sequence (CDS)

ATGAGAGGAGTGCTTATAAATGGTGTCACTGAGGTGGCACGTGAAGATCTAAGTGAGAGGGGGGCTGAAAAAGAAGTAGACAATATACATGCGGATGCATCAAAAGTTGTTTGTTCAAAAGAAGTTGTAGCCAAGGGAGCTGCAGATGAGCAAAGAGGACTTGAGGACGGTGCTCTAATAAAGTTGGAGCTGATGGCCTAG

Protein sequence

MRGVLINGVTEVAREDLSERGAEKEVDNIHADASKVVCSKEVVAKGAADEQRGLEDGALIKLELMA
Homology
[Close]
BLAST of Lag0026868 vs. NCBI nr
Match: XP_038880116.1 (transcription factor IIIB 90 kDa subunit-like isoform X4 [Benincasa hispida])

HSP 1 Score: 53.5 bits (127), Expect = 7.9e-04
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 23  EKEVDNIHADASKVVCSKEVVAKGAADEQRGLEDGA 59
           EK  DN+HADASK V SKE  AK AADEQRGL+DGA
Sbjct: 259 EKGSDNVHADASKTVSSKEAEAKEAADEQRGLDDGA 294

[Close]
BLAST of Lag0026868 vs. NCBI nr
Match: XP_038880114.1 (transcription factor IIIB 90 kDa subunit-like isoform X3 [Benincasa hispida])

HSP 1 Score: 53.5 bits (127), Expect = 7.9e-04
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 23  EKEVDNIHADASKVVCSKEVVAKGAADEQRGLEDGA 59
           EK  DN+HADASK V SKE  AK AADEQRGL+DGA
Sbjct: 295 EKGSDNVHADASKTVSSKEAEAKEAADEQRGLDDGA 330

[Close]
BLAST of Lag0026868 vs. NCBI nr
Match: XP_038880112.1 (transcription factor IIIB 70 kDa subunit-like isoform X1 [Benincasa hispida])

HSP 1 Score: 53.5 bits (127), Expect = 7.9e-04
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 23  EKEVDNIHADASKVVCSKEVVAKGAADEQRGLEDGA 59
           EK  DN+HADASK V SKE  AK AADEQRGL+DGA
Sbjct: 378 EKGSDNVHADASKTVSSKEAEAKEAADEQRGLDDGA 413

The following BLAST results are available for this feature:
BLAST of Lag0026868 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038880116.17.9e-0475.00transcription factor IIIB 90 kDa subunit-like isoform X4 [Benincasa hispida][more]
XP_038880114.17.9e-0475.00transcription factor IIIB 90 kDa subunit-like isoform X3 [Benincasa hispida][more]
XP_038880112.17.9e-0475.00transcription factor IIIB 70 kDa subunit-like isoform X1 [Benincasa hispida][more]
BLAST of Lag0026868 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026868.1Lag0026868.1mRNA