Lag0026799 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026799
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr10: 42042390 .. 42042895 (+)
RNA-Seq ExpressionLag0026799
SyntenyLag0026799
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATATTATTACAAATGAGGAAGACATTATAATGCACACGGACGCTTCGGTTATGAATAAGCAGAGTAACACCAACATTGGCATAGTTTTGAGGGATAACTATGGTATGCTAATAACGGTGCAGACTTTGCCCACTATGGTGAACCATTCTCCTATGGTAGTGGAAACGGTGGCGGTTCTGGAAGGGTTGCGTTTGGTCAGGAGTTTGAAGGTGGATCGACTATCTATTTTGTCGGACTCACTATCTTTAATTTAGTCCATTAATGAGGAGATGCAGGGGGATGCCTGTATTGCGGCGATTCTGCGGGAGATCAAAACGCGTCAAAATTCATTTCAGAGTTTGACTTTTCATTTTACTAATCGTAAATTCAATGTATTTGCTCATAGAATGGCCCGTTTAGGGCTATCATCTACTCCATGTTTGTGGCTCGGAAACTATCCCGAGTGGATGGTGTCTTTAGTGATCCAAGAGCGATCGTTGTTTGGTATCCCAACGGGGGCTAG

mRNA sequence

ATGAATATTATTACAAATGAGGAAGACATTATAATGCACACGGACGCTTCGGTTATGAATAAGCAGAGTAACACCAACATTGGCATAGTTTTGAGGGATAACTATGGTATGCTAATAACGGTGCAGACTTTGCCCACTATGGTGAACCATTCTCCTATGGTAGTGGAAACGGTGGCGGTTCTGGAAGGGTTGCGTTTGGTCAGGAGTTTGAAGAATGGCCCGTTTAGGGCTATCATCTACTCCATGTTTGTGGCTCGGAAACTATCCCGAGTGGATGGTGTCTTTAGTGATCCAAGAGCGATCGTTGTTTGGTATCCCAACGGGGGCTAG

Coding sequence (CDS)

ATGAATATTATTACAAATGAGGAAGACATTATAATGCACACGGACGCTTCGGTTATGAATAAGCAGAGTAACACCAACATTGGCATAGTTTTGAGGGATAACTATGGTATGCTAATAACGGTGCAGACTTTGCCCACTATGGTGAACCATTCTCCTATGGTAGTGGAAACGGTGGCGGTTCTGGAAGGGTTGCGTTTGGTCAGGAGTTTGAAGAATGGCCCGTTTAGGGCTATCATCTACTCCATGTTTGTGGCTCGGAAACTATCCCGAGTGGATGGTGTCTTTAGTGATCCAAGAGCGATCGTTGTTTGGTATCCCAACGGGGGCTAG

Protein sequence

MNIITNEEDIIMHTDASVMNKQSNTNIGIVLRDNYGMLITVQTLPTMVNHSPMVVETVAVLEGLRLVRSLKNGPFRAIIYSMFVARKLSRVDGVFSDPRAIVVWYPNGG
Homology
The following BLAST results are available for this feature:
BLAST of Lag0026799 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0026799 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 14..71
e-value: 4.7E-6
score: 26.4
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 9..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026799.1Lag0026799.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity