Lag0026762 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026762
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionPollen preferential protein
Locationchr10: 41606278 .. 41606757 (+)
RNA-Seq ExpressionLag0026762
SyntenyLag0026762
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAGTCCGATTATGATCCGGCCGCTATCGTCGAACCGTCCGCAACCGCTGCTACCGAGCCAATCCGTCTCCGGAAGCGTCCGGTTCGCGGAGGTTGCCGGCGGCACAACCGCGGAGTGCGCGGCCGTGTGCTGCTGTTGTCCTTGCATCGTCATCAACGTCCTCGTCCTCGCCGTTTACAAGGTTCCGGCCGGACTGTACCGCCGCGCCTTTAGGACGAAGCGGCGGCAGAGGCTGAAGAAGAAGGGAGGTTCTCCTGCGTGGCGCGGGCGGCACTCCATCGGCGGCCTGGACGAGACGGATATTCAGATTCTTTCATTCGGAAAAACGCTGTACTCGTCGGAACCGAAAGGTCAAAAATCGGAGGAGACGGATCGGAAAGTGATGGAACTGGAGAAAGAGATGTGGGAGATTTTCTACAGCACTGGATTCTGGAGAAGCCCCTCACAGAGAGATCAAATTTCAATCTCCAAATGA

mRNA sequence

ATGTCGAGTCCGATTATGATCCGGCCGCTATCGTCGAACCGTCCGCAACCGCTGCTACCGAGCCAATCCGTCTCCGGAAGCGTCCGGTTCGCGGAGGTTGCCGGCGGCACAACCGCGGAGTGCGCGGCCGTGTGCTGCTGTTGTCCTTGCATCGTCATCAACGTCCTCGTCCTCGCCGTTTACAAGGTTCCGGCCGGACTGTACCGCCGCGCCTTTAGGACGAAGCGGCGGCAGAGGCTGAAGAAGAAGGGAGGTTCTCCTGCGTGGCGCGGGCGGCACTCCATCGGCGGCCTGGACGAGACGGATATTCAGATTCTTTCATTCGGAAAAACGCTGTACTCGTCGGAACCGAAAGGTCAAAAATCGGAGGAGACGGATCGGAAAGTGATGGAACTGGAGAAAGAGATGTGGGAGATTTTCTACAGCACTGGATTCTGGAGAAGCCCCTCACAGAGAGATCAAATTTCAATCTCCAAATGA

Coding sequence (CDS)

ATGTCGAGTCCGATTATGATCCGGCCGCTATCGTCGAACCGTCCGCAACCGCTGCTACCGAGCCAATCCGTCTCCGGAAGCGTCCGGTTCGCGGAGGTTGCCGGCGGCACAACCGCGGAGTGCGCGGCCGTGTGCTGCTGTTGTCCTTGCATCGTCATCAACGTCCTCGTCCTCGCCGTTTACAAGGTTCCGGCCGGACTGTACCGCCGCGCCTTTAGGACGAAGCGGCGGCAGAGGCTGAAGAAGAAGGGAGGTTCTCCTGCGTGGCGCGGGCGGCACTCCATCGGCGGCCTGGACGAGACGGATATTCAGATTCTTTCATTCGGAAAAACGCTGTACTCGTCGGAACCGAAAGGTCAAAAATCGGAGGAGACGGATCGGAAAGTGATGGAACTGGAGAAAGAGATGTGGGAGATTTTCTACAGCACTGGATTCTGGAGAAGCCCCTCACAGAGAGATCAAATTTCAATCTCCAAATGA

Protein sequence

MSSPIMIRPLSSNRPQPLLPSQSVSGSVRFAEVAGGTTAECAAVCCCCPCIVINVLVLAVYKVPAGLYRRAFRTKRRQRLKKKGGSPAWRGRHSIGGLDETDIQILSFGKTLYSSEPKGQKSEETDRKVMELEKEMWEIFYSTGFWRSPSQRDQISISK
Homology
BLAST of Lag0026762 vs. NCBI nr
Match: XP_038905288.1 (uncharacterized protein LOC120091362 [Benincasa hispida])

HSP 1 Score: 257.3 bits (656), Expect = 8.7e-65
Identity = 134/160 (83.75%), Postives = 144/160 (90.00%), Query Frame = 0

Query: 1   MSSPIMIRPLSSNRPQPLLPSQSVSGSVRFAEVAGGTTAECAAVCCCCPCIVINVLVLAV 60
           MS+ IM+RP S+NR QPLL S+SVSGSVRFAEVAGGTTAECAAVCCCCPC+V+N LVLA+
Sbjct: 1   MSNTIMLRPPSTNRRQPLLTSKSVSGSVRFAEVAGGTTAECAAVCCCCPCVVLNFLVLAI 60

Query: 61  YKVPAGLYRRAFRTKRRQRLKKKGGSPAWRGRHSIGGLDETDIQILSFGKTLYSSEPKGQ 120
           YKVPAGL RRA RTKRRQRLKKKG  PA R R S GG DETDIQILS GKT+YSSEPKGQ
Sbjct: 61  YKVPAGLCRRALRTKRRQRLKKKGAIPARRTRFSGGGYDETDIQILSIGKTVYSSEPKGQ 120

Query: 121 KSEETDRKVMELEKEMWEIFYSTGFWRSPSQRDQI-SISK 160
           KSEET+R+VMELEKEMWEIFYSTGFWRSPSQRDQI SISK
Sbjct: 121 KSEETERRVMELEKEMWEIFYSTGFWRSPSQRDQISSISK 160

BLAST of Lag0026762 vs. NCBI nr
Match: KAA0043783.1 (uncharacterized protein E6C27_scaffold236G001150 [Cucumis melo var. makuwa] >TYK25350.1 uncharacterized protein E5676_scaffold352G004890 [Cucumis melo var. makuwa])

HSP 1 Score: 255.8 bits (652), Expect = 2.5e-64
Identity = 130/159 (81.76%), Postives = 144/159 (90.57%), Query Frame = 0

Query: 1   MSSPIMIRPLSSNRPQPLLPSQSVSGSVRFAEVAGGTTAECAAVCCCCPCIVINVLVLAV 60
           MS+ IM+RP SSNR QPLL S+S SGSVRFAEVAGGTTAECAAVCCCCPC+VIN LVLA+
Sbjct: 1   MSNTIMLRPPSSNRRQPLLASKSASGSVRFAEVAGGTTAECAAVCCCCPCVVINFLVLAI 60

Query: 61  YKVPAGLYRRAFRTKRRQRLKKKGGSPAWRGRHSIGGLDETDIQILSFGKTLYSSEPKGQ 120
           YKVPAGL RRA RTKRRQRLKKKG  PA RGR+S GG DETDIQILS GK+LYSSEP+GQ
Sbjct: 61  YKVPAGLCRRALRTKRRQRLKKKGVIPARRGRYSYGGYDETDIQILSAGKSLYSSEPRGQ 120

Query: 121 KSEETDRKVMELEKEMWEIFYSTGFWRSPSQRDQISISK 160
           ++EET+RKVMELEKEMWEIFYSTGFWRSPS+R+Q SIS+
Sbjct: 121 QAEETERKVMELEKEMWEIFYSTGFWRSPSRRNQTSISQ 159

BLAST of Lag0026762 vs. NCBI nr
Match: XP_011652052.1 (uncharacterized protein LOC105434984 [Cucumis sativus] >KGN59241.1 hypothetical protein Csa_001735 [Cucumis sativus])

HSP 1 Score: 252.7 bits (644), Expect = 2.1e-63
Identity = 129/159 (81.13%), Postives = 141/159 (88.68%), Query Frame = 0

Query: 1   MSSPIMIRPLSSNRPQPLLPSQSVSGSVRFAEVAGGTTAECAAVCCCCPCIVINVLVLAV 60
           MS+ IM RP SSNR QPLL S+S SGSVRFAEVAGGTTAECAAVCCCCPC+VIN LVLA+
Sbjct: 1   MSNTIMFRPPSSNRRQPLLTSKSASGSVRFAEVAGGTTAECAAVCCCCPCVVINFLVLAI 60

Query: 61  YKVPAGLYRRAFRTKRRQRLKKKGGSPAWRGRHSIGGLDETDIQILSFGKTLYSSEPKGQ 120
           YKVPAGL RRA RTKRRQRLKKKG +PA RGR S GG DETDIQILS GK +YSSEP+GQ
Sbjct: 61  YKVPAGLCRRALRTKRRQRLKKKGVTPARRGRFSFGGYDETDIQILSAGKLVYSSEPRGQ 120

Query: 121 KSEETDRKVMELEKEMWEIFYSTGFWRSPSQRDQISISK 160
           ++ ET+RKVMELEKEMWEIFYSTGFWRSPS+RDQ SIS+
Sbjct: 121 QAVETERKVMELEKEMWEIFYSTGFWRSPSRRDQTSISQ 159

BLAST of Lag0026762 vs. NCBI nr
Match: XP_016899649.1 (PREDICTED: uncharacterized protein LOC103486710 [Cucumis melo])

HSP 1 Score: 235.3 bits (599), Expect = 3.5e-58
Identity = 123/159 (77.36%), Postives = 136/159 (85.53%), Query Frame = 0

Query: 1   MSSPIMIRPLSSNRPQPLLPSQSVSGSVRFAEVAGGTTAECAAVCCCCPCIVINVLVLAV 60
           MS+ IM+RP SSNR QPLL S+S SGSVRFAEVAGGTTAECAAVCCCCPC+VIN LVLA+
Sbjct: 1   MSNTIMLRPPSSNRRQPLLASKSASGSVRFAEVAGGTTAECAAVCCCCPCVVINFLVLAI 60

Query: 61  YKVPAGLYRRAFRTKRRQRLKKKGGSPAWRGRHSIGGLDETDIQILSFGKTLYSSEPKGQ 120
           YKVPAGL RRA RTKRRQRLKKK            GG DETDIQILS GK+LYSSEP+GQ
Sbjct: 61  YKVPAGLCRRALRTKRRQRLKKKD-----------GGYDETDIQILSAGKSLYSSEPRGQ 120

Query: 121 KSEETDRKVMELEKEMWEIFYSTGFWRSPSQRDQISISK 160
           ++EET+RKVMELEKEMWEIFYSTGFWRSPS+R+Q SIS+
Sbjct: 121 QAEETERKVMELEKEMWEIFYSTGFWRSPSRRNQTSISQ 148

BLAST of Lag0026762 vs. NCBI nr
Match: XP_023539516.1 (uncharacterized protein LOC111800159 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 208.4 bits (529), Expect = 4.6e-50
Identity = 109/158 (68.99%), Postives = 127/158 (80.38%), Query Frame = 0

Query: 1   MSSPIMIRPLSSNRPQPLLPSQSVSGSVRFAEVAGGTTAECAAVCCCCPCIVINVLVLAV 60
           MS+ +M RP  S R QPLL S+S+ GS+RFAEVAGGTTAECAAVCCCCPC V++ LVLA+
Sbjct: 1   MSNKVMFRPPLSKREQPLLRSKSIPGSLRFAEVAGGTTAECAAVCCCCPCFVLHFLVLAI 60

Query: 61  YKVPAGLYRRAFRTKRRQRLKKKGGSPAWRGRHSIGGLDETDIQILSFGKTLYSSEPKGQ 120
           YKVPAGL RRA RT+RR  L +KG  PA RGR S    DE D+QIL+ GKT+ +SE KG+
Sbjct: 61  YKVPAGLCRRALRTRRRHSL-RKGTLPARRGRCSACSYDEADLQILTGGKTMNASELKGK 120

Query: 121 KSEETDRKVMELEKEMWEIFYSTGFWRSPSQRDQISIS 159
           KS+ET+RKVMELE EMWE FY TGFWRSPSQRDQI+ S
Sbjct: 121 KSDETERKVMELETEMWETFYGTGFWRSPSQRDQITDS 157

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038905288.18.7e-6583.75uncharacterized protein LOC120091362 [Benincasa hispida][more]
KAA0043783.12.5e-6481.76uncharacterized protein E6C27_scaffold236G001150 [Cucumis melo var. makuwa] >TYK... [more]
XP_011652052.12.1e-6381.13uncharacterized protein LOC105434984 [Cucumis sativus] >KGN59241.1 hypothetical ... [more]
XP_016899649.13.5e-5877.36PREDICTED: uncharacterized protein LOC103486710 [Cucumis melo][more]
XP_023539516.14.6e-5068.99uncharacterized protein LOC111800159 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33264EXPRESSED PROTEINcoord: 8..154
NoneNo IPR availablePANTHERPTHR33264:SF8EXPRESSED PROTEINcoord: 8..154

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026762.1Lag0026762.1mRNA