Lag0026638 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0026638
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	11 kDa late embryogenesis abundant protein-like
Location	chr10: 39951342 .. 39953033 (-)
RNA-Seq Expression	Lag0026638
Synteny	Lag0026638

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTCGGGAAGGAACGCGGCGGAGTCAGTGAAGGAATCGGCCGCCAACGTGGCGGCCTCTGCAAAAGCTGGCATGGAAAAAACCAAAGCCACTGCTCAAGAAAAGGTTTACAATTTTATTTTTTCACCTTTTTTATTTTTAATTAAATTAAATGTTTAATTTTTTTAACTTCTAAATTTATACTTAACCTATGTCTTAAGTTGATTTTTCAAATTTATGCCTAACACGGTTTTAAACTTTAAAACAAGTATTTTTTTAAGGACTTATTAAATATAGACTTGATAGTCTATTATTCAATTTATTTTTTTTTAATTTAAAGATTGTGGTTTGGGATGTTTTTGAGAAAAATAAGGTGGTTGGTTTGTTGCATGAACACCGATCTCGAAGAAATAAAATCAATGGTTCGAAGTTGATGAAAATAGCTTTACAATTTTTTGAAAATATTTATAAAAAAAAATGTCATGCACAAATAAATACTTTATATTTTAAAAATATATTAAAATATTTATTATTAATATTATCTCTTATTACTTTTTTTTTTTTTTTTTTTTGAGAAGAAACTCTTATTACTCATTATTAGTTACATTTTACTCATATTTTCTTTATATTTGGAGATGTCAATCTCGGAGAAATTTAATGCATTGAGTAAGACTAATTTTTATTTAGTTTTAGTTTTTGAATGGTTGAAAATTTAATAATCTAGAACAAAATAATTTTACAAATATTCTTTTATTACAATTCAAGAAAAAGAAAAAAAACTAGTAATTTTAGAGTTTGAGATACAAACAAACATTTAAAAATTCTGTAAAAGTAAACGTGGAAAACATTGTTTTTCATGTATATATATATACGGTTTCTTGGAGGCTAAAAAGAAAAAAAAAAAAAGTGATTCACACTTTAAATAAAATTTTTATTTAAAAGGTTAGAAATTCTTTTTTCTTTTTGGAATATTCAATAATGAAAGATCTAACCATTAATAATTAGTGGCAATTAGTGGCATCCATTATTTAATGGAGGATTTTACAATTAACTGAAAATATCAGTAACGAGCATAACTCAACTAACATAAGACCAATTGGTATATATTAGTATATAACGACCAATTGAGTCGTAGGGTAATTGTAGTACTAATGGAAGATCTCTGGTATGTGTTAGTATTTATTTACTATCTATCACTTGAATCGTGGTGTGTATGTTTTTATATTCTTAGATATTTTTTAAAGATGAATTAATTAGGGAAGGAAGAATGTGATTACTTTTCACCTTTACCAAAGTGGATCAATGTCAATAAATAATAATCGATAAATAACAACATTAGATATTAATAATACAAGTACAAAGTTTCAAAAAAAAATAAAAATAATACAAGTACAAAACAAAATAATAAAATAATTACTTGGATGTGAATCCATGAGCCAGATGGACAAAATGCGGGCCCACGATCCATTGGAGAAGGAAATGGCGAGGGAAAGGAAAGATGAGAGGCTTCACGAGGCTGAATTCGACAAACAACAGGCGCGTGCAGAACACGCGGCCGAGAGGCACTCTGCGACAGCTACAGGCCCAGGGACCCGCACCGGCTTCGGCACCGGAACTGGGACCGGACCGACCACTGCGACCGGGACTGGAACTGGAACTGGAACTGGAACCCACACCTATGACCCCACCGTGGGCGCCACCTACCGTTGA

mRNA sequence

ATGCAGTCGGGAAGGAACGCGGCGGAGTCAGTGAAGGAATCGGCCGCCAACGTGGCGGCCTCTGCAAAAGCTGGCATGGAAAAAACCAAAGCCACTGCTCAAGAAAAGATGGACAAAATGCGGGCCCACGATCCATTGGAGAAGGAAATGGCGAGGGAAAGGAAAGATGAGAGGCTTCACGAGGCTGAATTCGACAAACAACAGGCGCGTGCAGAACACGCGGCCGAGAGGCACTCTGCGACAGCTACAGGCCCAGGGACCCGCACCGGCTTCGGCACCGGAACTGGGACCGGACCGACCACTGCGACCGGGACTGGAACTGGAACTGGAACTGGAACCCACACCTATGACCCCACCGTGGGCGCCACCTACCGTTGA

Coding sequence (CDS)

ATGCAGTCGGGAAGGAACGCGGCGGAGTCAGTGAAGGAATCGGCCGCCAACGTGGCGGCCTCTGCAAAAGCTGGCATGGAAAAAACCAAAGCCACTGCTCAAGAAAAGATGGACAAAATGCGGGCCCACGATCCATTGGAGAAGGAAATGGCGAGGGAAAGGAAAGATGAGAGGCTTCACGAGGCTGAATTCGACAAACAACAGGCGCGTGCAGAACACGCGGCCGAGAGGCACTCTGCGACAGCTACAGGCCCAGGGACCCGCACCGGCTTCGGCACCGGAACTGGGACCGGACCGACCACTGCGACCGGGACTGGAACTGGAACTGGAACTGGAACCCACACCTATGACCCCACCGTGGGCGCCACCTACCGTTGA

Protein sequence

MQSGRNAAESVKESAANVAASAKAGMEKTKATAQEKMDKMRAHDPLEKEMARERKDERLHEAEFDKQQARAEHAAERHSATATGPGTRTGFGTGTGTGPTTATGTGTGTGTGTHTYDPTVGATYR

Homology

[Close]

BLAST of Lag0026638 vs. NCBI nr
Match: XP_038905932.1 (11 kDa late embryogenesis abundant protein-like [Benincasa hispida])

HSP 1 Score: 146.4 bits (368), Expect = 1.7e-31
Identity = 90/121 (74.38%), Postives = 98/121 (80.99%), Query Frame = 0


Query: 1   MQSGRNAAESVKESAANVAASAKAGMEKTKATAQEKMDKMRAHDPLEKEMARERKDERLH 60
           MQSGRNAAE+ KESAANV ASAKAGMEK KA+AQEK+DKMRAHDP+EK+MARERK+ER+ 
Sbjct: 1   MQSGRNAAEAAKESAANVGASAKAGMEKAKASAQEKVDKMRAHDPIEKDMARERKEERIQ 60

Query: 61  EAEFDKQQARAEHAAERHSATATGPGTRTGFGTGTGTGPTTATGTGTGTGTGTHTYDPTV 120
           EAE DKQQARAEHAA+R   T TGPGTR G             GTGTGTGTGTHTYDPTV
Sbjct: 61  EAELDKQQARAEHAADRQ--TGTGPGTRVGL------------GTGTGTGTGTHTYDPTV 107

Query: 121 G 122
           G
Sbjct: 121 G 107

[Close]

BLAST of Lag0026638 vs. NCBI nr
Match: XP_031737964.1 (11 kDa late embryogenesis abundant protein-like [Cucumis sativus] >KGN59308.1 hypothetical protein Csa_001802 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 7.1e-30
Identity = 88/121 (72.73%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 1   MQSGRNAAESVKESAANVAASAKAGMEKTKATAQEKMDKMRAHDPLEKEMARERKDERLH 60
           MQSGRNAAE++KESAANV ASAKAGMEKTKATAQEK+DKMRAHDP EK+MARERKDER+ 
Sbjct: 1   MQSGRNAAEAMKESAANVGASAKAGMEKTKATAQEKVDKMRAHDPFEKDMARERKDERIQ 60

Query: 61  EAEFDKQQARAEHAAERHSATATGPGTRTGFGTGTGTGPTTATGTGTGTGTGTHTYDPTV 120
           EAE DKQQAR EHAAER   T TGPGTRTG                   GTGTHTYDPTV
Sbjct: 61  EAELDKQQARVEHAAERQ--TGTGPGTRTGL------------------GTGTHTYDPTV 101

Query: 121 G 122
           G
Sbjct: 121 G 101

[Close]

BLAST of Lag0026638 vs. NCBI nr
Match: XP_022940345.1 (11 kDa late embryogenesis abundant protein-like [Cucurbita moschata] >XP_023539729.1 11 kDa late embryogenesis abundant protein-like [Cucurbita pepo subsp. pepo] >XP_023539730.1 11 kDa late embryogenesis abundant protein-like [Cucurbita pepo subsp. pepo] >KAG6596235.1 18 kDa seed maturation protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027777.1 18 kDa seed maturation protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.0 bits (341), Expect = 2.3e-28
Identity = 90/125 (72.00%), Postives = 97/125 (77.60%), Query Frame = 0


Query: 1   MQSGRNAAESVKESAANVAASAKAGMEKTKATAQEKMDKMRAHDPLEKEMARERKDERLH 60
           MQSG+NAAESVKESAANV ASA+AGMEKTKATAQEK+DKMRAHDPLEK+MA ERK+ERLH
Sbjct: 1   MQSGKNAAESVKESAANVGASARAGMEKTKATAQEKVDKMRAHDPLEKDMASERKEERLH 60

Query: 61  EAEFDKQQARAEHAAERHSATATGPGTRTGFGTGTGTGPTTATGTGTGTGTGTHTYDPTV 120
            AE DKQQARAEHA ER +A+           TG  TG T    TGTGTGTGT  YDPTV
Sbjct: 61  GAELDKQQARAEHATERQAASK----------TGAHTGLT----TGTGTGTGTRAYDPTV 111

Query: 121 GATYR 126
           G T R
Sbjct: 121 GGTDR 111

[Close]

BLAST of Lag0026638 vs. NCBI nr
Match: TYK25405.1 (18 kDa seed maturation protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.0 bits (336), Expect = 8.7e-28
Identity = 82/103 (79.61%), Postives = 88/103 (85.44%), Query Frame = 0


Query: 1   MQSGRNAAESVKESAANVAASAKAGMEKTKATAQEKMDKMRAHDPLEKEMARERKDERLH 60
           MQSGRNAAE+VKESAANV ASAKAGMEKTKATAQEK+DKMRAHDP EKEM RE+KDER+ 
Sbjct: 1   MQSGRNAAEAVKESAANVGASAKAGMEKTKATAQEKVDKMRAHDPYEKEMVREKKDERIQ 60

Query: 61  EAEFDKQQARAEHAAERHSATATGPGTRTGFGTGTGTGPTTAT 104
           EA+ DKQQAR EHAAER +   TGPGTRTG GTGTG  PT  T
Sbjct: 61  EADLDKQQARFEHAAERQA--GTGPGTRTGLGTGTGPEPTPTT 101

[Close]

BLAST of Lag0026638 vs. NCBI nr
Match: XP_022971427.1 (11 kDa late embryogenesis abundant protein-like [Cucurbita maxima])

HSP 1 Score: 132.5 bits (332), Expect = 2.5e-27
Identity = 86/125 (68.80%), Postives = 93/125 (74.40%), Query Frame = 0


Query: 1   MQSGRNAAESVKESAANVAASAKAGMEKTKATAQEKMDKMRAHDPLEKEMARERKDERLH 60
           MQSG+NAAESVKESAANV ASA+AGMEKTKATAQEK+DKMRAHDPLEK+MA ERK+ERLH
Sbjct: 1   MQSGKNAAESVKESAANVGASARAGMEKTKATAQEKVDKMRAHDPLEKDMASERKEERLH 60

Query: 61  EAEFDKQQARAEHAAERHSATATGPGTRTGFGTGTGTGPTTATGTGTGTGTGTHTYDPTV 120
            AE DKQQARAEHAAER +A+ TG                    TG  TGTGT  YDPTV
Sbjct: 61  GAELDKQQARAEHAAERQAASKTG------------------AHTGLTTGTGTRAYDPTV 107

Query: 121 GATYR 126
           G T R
Sbjct: 121 GGTDR 107

[Close]

BLAST of Lag0026638 vs. ExPASy Swiss-Prot
Match: P46515 (11 kDa late embryogenesis abundant protein OS=Helianthus annuus OX=4232 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-19
Identity = 68/111 (61.26%), Postives = 84/111 (75.68%), Query Frame = 0


Query: 1   MQSGRNAAESVKESAANVAASAKAGMEKTKATAQEKMDKMRAHDPLEKEMARERKDERLH 60
           MQSG+NAA S KE+AANVAASAKAGMEKTKA+ QEK +KM AHDP++KEMARE+K+ER H
Sbjct: 1   MQSGKNAAASAKETAANVAASAKAGMEKTKASLQEKGEKMTAHDPMQKEMAREKKEERKH 60

Query: 61  EAEFDKQQARAEHAAERHSATATGPGTRTGFGTGTGTGPTT-ATGTGTGTG 111
           EAE++KQ A+  +AA++ +         TG GTGT +  TT  TG  TGTG
Sbjct: 61  EAEYEKQAAKEHNAAQKQT---------TGIGTGTHSYTTTNVTGHRTGTG 102

[Close]

BLAST of Lag0026638 vs. ExPASy Swiss-Prot
Match: Q01417 (18 kDa seed maturation protein OS=Glycine max OX=3847 GN=GMPM1 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-14
Identity = 58/115 (50.43%), Postives = 77/115 (66.96%), Query Frame = 0


Query: 1   MQSGRNAAESVKESAANVAASAKAGMEKTKATAQEKMDKMRAHDPLEKEMARERKDERLH 60
           MQ G+ A ES+KE+A N+ ASAKAGMEKTKAT QEK ++M A DP++KE+A ++K+ +++
Sbjct: 1   MQGGKKAGESIKETATNIGASAKAGMEKTKATVQEKAERMTARDPVQKELATQKKEAKMN 60

Query: 61  EAEFDKQQARAEHAAERHSATATGPGTRTGFGTGTGTGPTTATGTGT-GTGTGTH 115
           +AE DKQ AR  + A + SAT  G        TGTGTG  T + TG  G   G H
Sbjct: 61  QAELDKQAARQHNTAAKQSATTAGHMGHGHHTTGTGTGTATYSTTGEYGQPMGAH 115

[Close]

BLAST of Lag0026638 vs. ExPASy Swiss-Prot
Match: Q9FG31 (Late embryogenesis abundant protein 46 OS=Arabidopsis thaliana OX=3702 GN=LEA46 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.5e-11
Identity = 49/106 (46.23%), Postives = 74/106 (69.81%), Query Frame = 0


Query: 9   ESVKESAANVAASAKAGMEKTKATAQEKMDKMRAHDPLEKEMARERKDERLHEAEFDKQQ 68
           +S+KE+A+N+AASAK+GM+KTKAT +EK +KM+  DP++K+MA + K++++++AE  K++
Sbjct: 2   QSMKETASNIAASAKSGMDKTKATLEEKAEKMKTRDPVQKQMATQVKEDKINQAEMQKRE 61

Query: 69  ARAEHAAERHSATATGPGTRTGFGTGTGTGPTTATGTGTGTGTGTH 115
            R  +AA + +A     G  TG G GT T  TT      G GTGTH
Sbjct: 62  TRQHNAAMKEAA-----GAGTGLGLGTATHSTTGQ---VGHGTGTH 99

[Close]

BLAST of Lag0026638 vs. ExPASy Swiss-Prot
Match: Q00747 (Protein LE25 OS=Solanum lycopersicum OX=4081 GN=LE25 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.9e-10
Identity = 45/86 (52.33%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 13 ESAANVAASAKAGMEKTKATAQEKMDKMRAHDPLEKEMARERKDERLHEAEFDKQQARAE 72
          ++  + A++AKAGMEKTKA  QEK ++M   DPL+KEMA E+K++R+  AE  K+ A+A+
Sbjct: 2  QTGKDAASAAKAGMEKTKANVQEKAERMTTRDPLKKEMATEKKEDRVAAAEMGKRDAKAQ 61

Query: 73 HAAERHSATATGPGTRTGFG-TGTGT 98
          HAAE+  A  TG GT TG+G TG  T
Sbjct: 62 HAAEKQGAATTGTGT-TGYGATGNHT 86

[Close]

BLAST of Lag0026638 vs. ExPASy Swiss-Prot
Match: P09441 (Late embryogenesis abundant protein D-113 OS=Gossypium hirsutum OX=3635 PE=2 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-08
Identity = 60/118 (50.85%), Postives = 72/118 (61.02%), Query Frame = 0


Query: 13  ESAANVAASAKAGMEKTKATAQEKMDKMRAHDPLEKEMARERKDERLHEAEFDKQQARAE 72
           +S  + AASAKAGMEK KA+ QEK+D+M+  DP EKEMARERK+ER  +AE  KQ+AR  
Sbjct: 2   QSMKDAAASAKAGMEKAKASMQEKVDQMKTRDPNEKEMARERKEERQEDAELRKQEAR-- 61

Query: 73  HAAERHSATATGPGTRTGFGTGTGTGPTTA------TGTGTGTGTGTHTYDPTVGATY 125
                H+ATA   G   G G G GTG TTA      TG   GTG   +   PT G+ Y
Sbjct: 62  ----HHNATAGHVG---GGGIG-GTGYTTAGYNIGDTGGYGGTGGHDNRGYPTAGSGY 109

The following BLAST results are available for this feature:

BLAST of Lag0026638 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905932.1	1.7e-31	74.38	11 kDa late embryogenesis abundant protein-like [Benincasa hispida]	[more]
XP_031737964.1	7.1e-30	72.73	11 kDa late embryogenesis abundant protein-like [Cucumis sativus] >KGN59308.1 hy...	[more]
XP_022940345.1	2.3e-28	72.00	11 kDa late embryogenesis abundant protein-like [Cucurbita moschata] >XP_0235397...	[more]
TYK25405.1	8.7e-28	79.61	18 kDa seed maturation protein [Cucumis melo var. makuwa]	[more]
XP_022971427.1	2.5e-27	68.80	11 kDa late embryogenesis abundant protein-like [Cucurbita maxima]	[more]

BLAST of Lag0026638 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46515	1.5e-19	61.26	11 kDa late embryogenesis abundant protein OS=Helianthus annuus OX=4232 PE=2 SV=...	[more]
Q01417	1.5e-14	50.43	18 kDa seed maturation protein OS=Glycine max OX=3847 GN=GMPM1 PE=2 SV=1	[more]
Q9FG31	3.5e-11	46.23	Late embryogenesis abundant protein 46 OS=Arabidopsis thaliana OX=3702 GN=LEA46 ...	[more]
Q00747	2.9e-10	52.33	Protein LE25 OS=Solanum lycopersicum OX=4081 GN=LE25 PE=2 SV=1	[more]
P09441	2.7e-08	50.85	Late embryogenesis abundant protein D-113 OS=Gossypium hirsutum OX=3635 PE=2 SV=...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 52..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..125
None	No IPR available	PANTHER	PTHR33493:SF2	LATE EMBRYOGENESIS ABUNDANT PROTEIN 46	coord: 1..113
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PFAM	PF03760	LEA_1	coord: 9..77 e-value: 7.0E-23 score: 81.0
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PANTHER	PTHR33493	LATE EMBRYOGENESIS ABUNDANT PROTEIN 6-RELATED	coord: 1..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0026638.1	Lag0026638.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0009628	response to abiotic stimulus
biological_process	GO:0006950	response to stress