Lag0026633 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0026633
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr10: 39876448 .. 39877932 (-)
RNA-Seq Expression	Lag0026633
Synteny	Lag0026633

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAAAACCCAAAACGACATGTCGACCAGTCCTCAAGGATCGGTTCCAAATAAAACATCGGCATTTCCTCCCCCAATCTTAGCGTCAGCTGCACTTCAATGTCCATCCCCTCTCTCTCCTCTCTCTTCTCTCTTCTCTCTCTAACATTGATTAACTTTTCATCCTGATTTTCTGTTTAATTAGGAGGAAGGGAATTGAATCAAGTAACGCACAATTTCAATCTTCAGCCATGGTTTCTGGGTTTGGATCTTCAGGCGTTTTCATGGTGCCGCTTCATCGATTAGCGCCAATCGCTTGGCTTGCGAAGCATATTCCAGTTGCCGCGATCCATATCAGAGGCGTGCCGGCAAGATCATCCGGTTAGCCTCTCATTGGTTGCTTTGATATTCGACCGCGATTAGATGACTCTTTGCGAGAGACTCTCCAGGAAATTATGCGCCACTCGCATTTTTGTTTGGTAGGTTCAATTGCAGGTTTGTTTCACCATTTCTGTTTCTGTTTTTTTGGGTATTTGGTTGTTTTTGAATTTCGATTTTCCCCCTTTAACTGGACTTGAGTGGTCTTTGACTTGATGGGTAGCTCGAGATGGAACCTCCCCTTTTTCTAGTTTGATTGTTTTTCTATGCCTTTTCGTTGTGTTTTCTAGTGACAGCTCCGATCGGCGTTAATCTGTCTTGTGGTACTCTAGCTTTTGGATTTGGGTGGTTTCTATTTTGACATGAACTTGATTTCTTTGAGTTTATTTGAATTGACTGAGATCATATTCAATCTGTTGAAAAACTTCACAATCCATGCATTTGGGGGTAAGGGGGGTGCTTGACAATAGATTATTGGCTGTAGACGTGTATGTTTTCGGTCGAAGTTGACCATCCACCACTCTTTCTTTTATTCCATTCTTCTTTTTTTCATAATTAATAGATTGGTTCTAAGAGAACGAAGTATAACAATTTAGGCAGCTCCTTTGTTGTAATTACAATTCTTGAAGTATTGCCCTCTATTGACTGCATGCATACTTGGAACTGCGAGCTTCTCCAAGTCTTCCATATTTGCATTAGATAACAGTAATTCTTAAGGGAGATTTGCGAGATTGGAGTGTGATAATTGCCTATCACAGTAAAGGGAAACTAAACTACAAAAATGATAAGGGAGGGGTGGGGGTAAGGTGGAGGAGGATTGATTTTGTGTTAGTATATTCATAGACGATGTTTTTTTTTTATCTTTGGTTTATGAAATGCTTGAGTCTCAGTTCATTGGAGTTGGGAATCTCATTCCTTCTTTGATGACAATGGAGGCATAACTTTCTAAGGATTTGAATTCTTTTGTGGTGTTATCTGTTTCTAGGTTCCGTCTTATGGTTTTTGATTGAGTTCTTTGTGTAGGTCTATTCATACTTGGATTTCTCATCCATTAAGGGAGTTCATTGAAGAGTTGTTCAGATGGCGATCTCCTTCAGTGGTAGGGACAACTTTTCTTGGAATCTAG

mRNA sequence

ATGTTCAAAACCCAAAACGACATGTCGACCAGTCCTCAAGGATCGGTTCCAAATAAAACATCGGCATTTCCTCCCCCAATCTTAGCGAGGAAGGGAATTGAATCAAGTAACGCACAATTTCAATCTTCAGCCATGGTTTCTGGGTTTGGATCTTCAGGCGTTTTCATGGTGCCGCTTCATCGATTAGCGCCAATCGCTTGGCTTGCGAAGCATATTCCAGTTGCCGCGATCCATATCAGAGGCGTGCCGGCAAGATCATCCGTGACAGCTCCGATCGGCGTTAATCTGTCTTGTGGTACTCTAGCTTTTGGATTTGGGTGGTCTATTCATACTTGGATTTCTCATCCATTAAGGGAGTTCATTGAAGAGTTGTTCAGATGGCGATCTCCTTCAGTGGTAGGGACAACTTTTCTTGGAATCTAG

Coding sequence (CDS)

ATGTTCAAAACCCAAAACGACATGTCGACCAGTCCTCAAGGATCGGTTCCAAATAAAACATCGGCATTTCCTCCCCCAATCTTAGCGAGGAAGGGAATTGAATCAAGTAACGCACAATTTCAATCTTCAGCCATGGTTTCTGGGTTTGGATCTTCAGGCGTTTTCATGGTGCCGCTTCATCGATTAGCGCCAATCGCTTGGCTTGCGAAGCATATTCCAGTTGCCGCGATCCATATCAGAGGCGTGCCGGCAAGATCATCCGTGACAGCTCCGATCGGCGTTAATCTGTCTTGTGGTACTCTAGCTTTTGGATTTGGGTGGTCTATTCATACTTGGATTTCTCATCCATTAAGGGAGTTCATTGAAGAGTTGTTCAGATGGCGATCTCCTTCAGTGGTAGGGACAACTTTTCTTGGAATCTAG

Protein sequence

MFKTQNDMSTSPQGSVPNKTSAFPPPILARKGIESSNAQFQSSAMVSGFGSSGVFMVPLHRLAPIAWLAKHIPVAAIHIRGVPARSSVTAPIGVNLSCGTLAFGFGWSIHTWISHPLREFIEELFRWRSPSVVGTTFLGI

Homology

[Close]

BLAST of Lag0026633 vs. NCBI nr
Match: KAG6596233.1 (hypothetical protein SDJN03_09413, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.3 bits (194), Expect = 2.9e-11
Identity = 40/53 (75.47%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 30  RKGIESSNAQFQSSAMVSGFGSSGVFMVPLHRLAPIAWLAKHIPVAAIHIRGV 83
           R GIESS AQFQS+AMVSG  SSGVF++PL+RLA IAWL KH P  AIHIRGV
Sbjct: 55  RNGIESSKAQFQSTAMVSGLRSSGVFVLPLNRLALIAWLVKHFPAVAIHIRGV 107

[Close]

BLAST of Lag0026633 vs. NCBI nr
Match: KGN59311.1 (hypothetical protein Csa_000870 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 3.2e-10
Identity = 49/86 (56.98%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 8  MSTSPQGSVPNKTSAFPPPILA------RKGIESSNAQFQSSAMVSGFGSSGVFMVPLHR 67
          MST+PQGSVPNK      P L+        GIESSNAQFQ   M     SS VFM  LHR
Sbjct: 1  MSTNPQGSVPNKNIGIFFPNLSVSWTSMMMGIESSNAQFQFPTMFFRLRSSSVFMPSLHR 60

Query: 68 LAPIAWLAKHIPVAAIHIRGVPARSS 88
          L  IA L  H P AAIH RGV ARSS
Sbjct: 61 LLSIASLPTHFPAAAIHTRGVAARSS 86

[Close]

BLAST of Lag0026633 vs. NCBI nr
Match: KAA0043725.1 (hypothetical protein E6C27_scaffold236G00540 [Cucumis melo var. makuwa] >TYK25408.1 hypothetical protein E5676_scaffold352G005500 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 4.7e-06
Identity = 35/56 (62.50%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 32 GIESSNAQFQSSAMVSGFGSSGVFMVPLHRLAPIAWLAKHIPVAAIHIRGVPARSS 88
          GIESSNAQFQ   +     SS VFM  LHRL  IA L  H P AAIH RGV ARSS
Sbjct: 42 GIESSNAQFQFPTVFFRLRSSSVFMASLHRLPSIALLPTHFPAAAIHTRGVAARSS 97

The following BLAST results are available for this feature:

BLAST of Lag0026633 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596233.1	2.9e-11	75.47	hypothetical protein SDJN03_09413, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN59311.1	3.2e-10	56.98	hypothetical protein Csa_000870 [Cucumis sativus]	[more]
KAA0043725.1	4.7e-06	62.50	hypothetical protein E6C27_scaffold236G00540 [Cucumis melo var. makuwa] >TYK2540...	[more]

BLAST of Lag0026633 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0026633.1	Lag0026633.1	mRNA