Lag0026609 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0026609
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Integrase catalytic domain-containing protein
Location	chr10: 39634067 .. 39635002 (-)
RNA-Seq Expression	Lag0026609
Synteny	Lag0026609

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACTGCCTTTTTGGCCAAGAACTCTCAATCGAATGTGGCCAACTCCAGTCGTTCTAATCCTTAGAATACCAGGAAGAAGGAGCGTCCTCAATGCACTCACTGCAATGTTTTGGGGCACACTGTTGATCATTGTTATAAACTCCTTCGACTGCTTCAACCAAGATAGAAATCTCCCTTGTTCCAGGCTTCACTATAGAGCAATGCCAAATCCTCCTAATATGTTACAGTCACATTTGACCACTGCCAAGGTTGATTCTAATTCTCCATCTTCTTCTGGTACCGCACATGTCGAAGGTACATGCTCTTCCCTGATCCTCTTAATTCTACAGATGATAATTGGATTGTTGACTCGGGGCTTCTGCACATATATGTTATTCGAAGGAGATGTTTTCTTCTCTACATGAGGTATCTGGATTCTTAGTCACCTCCCTAATCAGAACCGTATCAAAGTAGATTTAACTGGGGATATACATTTATCATCCACACTCATACTGCATAATGTACTATTTGTTCCAGAATTCAGATTCAACCTCATCTCTGTCAGTACAATATCTGCAAAATTGCCCATTTTGATATCCTTTGTTGATGATTATTGTTTGCTTCAGGACAAGTCCTCTTTGAAGATGATTGGTAGGGCTAAACTTTGGCAAGGACTCTATACTTTACAGCCTGATTCCTTAATGTCTGAAAATTTTCATACTTCTACACAACATACTCTTAATTCAGTAGCTTGTAACTCTGTGTCTCAATGTAATATTTCTTTGTGGCATGACCGTCTTGGTCATCCTTCTATAAGACATTTGACTGCTTTGAAGAGTATTTTGCCTTGTCAAAACTTCAATTTTCAGCCTTGTTTGATATGCCCCTTACCAAACAGTGGAGACTGTCTTTATCTTCTAGTAATAGCTCAACAACCAGCCCCTTTGAATTGA

mRNA sequence

ATGCCACTGCCTTTTTGGCCAAGAACTCTCAATCGAATGTGGCCAACTCCAGTCGTTCTAATCCTTAGAATACCAGGAAGAAGGAGCGTCCTCAATGCACTCACTGCAATGTTTTGGGGCACACTGTTGATCATTGTTATAAACTCCTTCGACTGCTTCAACCAAGATAGAAATCTCCCTTGTTCCAGGCTTCACTATAGAGCAATGCCAAATCCTCCTAATATGTTACAGTCACATTTGACCACTGCCAAGGTTGATTCTAATTCTCCATCTTCTTCTGGTACCGCACATGTCGAAGAATTCAGATTCAACCTCATCTCTGTCAGTACAATATCTGCAAAATTGCCCATTTTGATATCCTTTGTTGATGATTATTGTTTGCTTCAGGACAAGTCCTCTTTGAAGATGATTGGTAGGGCTAAACTTTGGCAAGGACTCTATACTTTACAGCCTGATTCCTTAATGTCTGAAAATTTTCATACTTCTACACAACATACTCTTAATTCAGTAGCTTGTAACTCTGTGTCTCAATGTAATATTTCTTTGTGGCATGACCGTCTTGGTCATCCTTCTATAAGACATTTGACTGCTTTGAAGAGTATTTTGCCTTGTCAAAACTTCAATTTTCAGCCTTGTTTGATATGCCCCTTACCAAACAGTGGAGACTGTCTTTATCTTCTAGTAATAGCTCAACAACCAGCCCCTTTGAATTGA

Coding sequence (CDS)

ATGCCACTGCCTTTTTGGCCAAGAACTCTCAATCGAATGTGGCCAACTCCAGTCGTTCTAATCCTTAGAATACCAGGAAGAAGGAGCGTCCTCAATGCACTCACTGCAATGTTTTGGGGCACACTGTTGATCATTGTTATAAACTCCTTCGACTGCTTCAACCAAGATAGAAATCTCCCTTGTTCCAGGCTTCACTATAGAGCAATGCCAAATCCTCCTAATATGTTACAGTCACATTTGACCACTGCCAAGGTTGATTCTAATTCTCCATCTTCTTCTGGTACCGCACATGTCGAAGAATTCAGATTCAACCTCATCTCTGTCAGTACAATATCTGCAAAATTGCCCATTTTGATATCCTTTGTTGATGATTATTGTTTGCTTCAGGACAAGTCCTCTTTGAAGATGATTGGTAGGGCTAAACTTTGGCAAGGACTCTATACTTTACAGCCTGATTCCTTAATGTCTGAAAATTTTCATACTTCTACACAACATACTCTTAATTCAGTAGCTTGTAACTCTGTGTCTCAATGTAATATTTCTTTGTGGCATGACCGTCTTGGTCATCCTTCTATAAGACATTTGACTGCTTTGAAGAGTATTTTGCCTTGTCAAAACTTCAATTTTCAGCCTTGTTTGATATGCCCCTTACCAAACAGTGGAGACTGTCTTTATCTTCTAGTAATAGCTCAACAACCAGCCCCTTTGAATTGA

Protein sequence

MPLPFWPRTLNRMWPTPVVLILRIPGRRSVLNALTAMFWGTLLIIVINSFDCFNQDRNLPCSRLHYRAMPNPPNMLQSHLTTAKVDSNSPSSSGTAHVEEFRFNLISVSTISAKLPILISFVDDYCLLQDKSSLKMIGRAKLWQGLYTLQPDSLMSENFHTSTQHTLNSVACNSVSQCNISLWHDRLGHPSIRHLTALKSILPCQNFNFQPCLICPLPNSGDCLYLLVIAQQPAPLN

Homology

[Close]

BLAST of Lag0026609 vs. NCBI nr
Match: XP_022152756.1 (uncharacterized protein LOC111020399 [Momordica charantia])

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-14
Identity = 57/139 (41.01%), Postives = 78/139 (56.12%), Query Frame = 0


Query: 83  AKVDSNSPSSSGTAHVEEFRFNLISVSTISAKLPILISFVDDYCLLQDKSSLKMIGRAKL 142
           +K  SNS S S  A +   R+NL+ VS ++A   + + F D+ C+LQDKSS KMIG+A+ 
Sbjct: 260 SKSVSNSSSYSRQAFLHTLRYNLLYVSALTADSSVSVLFADNCCILQDKSSSKMIGKAES 319

Query: 143 WQGLYTLQPDSLMSENFHTSTQHTLNSVACNSVSQCNISLWHDRLGHPSIRHLTALKSIL 202
           W GLY      L+S   + +    L  V CNS        WH+RLGHPS +HL ALK++L
Sbjct: 320 WHGLY------LLSVELYAA----LTIVVCNSA----YHTWHNRLGHPSPKHLFALKNVL 379

Query: 203 PCQNFNFQ----PCLICPL 218
              + +      PC I PL
Sbjct: 380 HIDSVSKHDSDFPCEIFPL 384

[Close]

BLAST of Lag0026609 vs. NCBI nr
Match: XP_022143573.1 (uncharacterized protein LOC111013441 [Momordica charantia])

HSP 1 Score: 86.7 bits (213), Expect = 3.0e-13
Identity = 53/153 (34.64%), Postives = 81/153 (52.94%), Query Frame = 0


Query: 69  MPNPPNMLQSHLTTAKVDSNSPSSSGTAHVEEFRFNLISVSTISAKLPIL-ISFVDDYCL 128
           +PN P  +  +    ++ S+  S  G  ++ EF FNLISV+ +   +P L + F +D C+
Sbjct: 274 LPNKPRFVVEYSGFVRL-SDHLSIHGVLYIPEFYFNLISVNVLLRDMPSLSVEFTNDTCI 333

Query: 129 LQDKSSLKMIGRAKLWQGLYTLQPDSLMSENFHTSTQHTLNSVACNSVSQCNISLWHDRL 188
           +QDKS  K I + +L  GLY L   S  S         T+ S+  ++ +  +  +WH+RL
Sbjct: 334 IQDKSISKTIDKGRLCHGLYLLDNTSECSS--------TVQSICVSAFTLVSFDVWHNRL 393

Query: 189 GHPSIRHLTALKSILPCQNFNFQPCLI--CPLP 219
           GHPS   L ALKS+LP  N + +  L   C  P
Sbjct: 394 GHPSFTRLPALKSVLPVDNCSLEDFLTDSCDFP 417

[Close]

BLAST of Lag0026609 vs. NCBI nr
Match: KZV21171.1 (hypothetical protein F511_24735 [Dorcoceras hygrometricum])

HSP 1 Score: 82.4 bits (202), Expect = 5.7e-12
Identity = 46/123 (37.40%), Postives = 68/123 (55.28%), Query Frame = 0


Query: 97  HVEEFRFNLISVSTISAKLPILISFVDDYCLLQDKSSLKMIGRAKLWQGLYTL--QPDSL 156
           HV +F+FNL+S+S  +      + F  D+C  QD S+ K++G  KL+ GLY L   P ++
Sbjct: 309 HVPDFKFNLLSISKFTKDHHCSVVFYPDFCFFQDLSTGKIMGIGKLYNGLYYLAETPQNI 368

Query: 157 MSENFHTSTQHTLNSVACNSVSQCNISLWHDRLGHPSIRHLTALKSILPCQNFNFQPCLI 216
            ++   +S + T  S AC  +   +I++WH R GH SI  L  L  I   QN    PC I
Sbjct: 369 QTDRILSSPKLTCTSFACKDI---DINIWHQRFGHMSISRLQHLPFI--TQNTLNSPCYI 426

Query: 217 CPL 218
           CP+
Sbjct: 429 CPI 426

[Close]

BLAST of Lag0026609 vs. NCBI nr
Match: KYP54541.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 80.5 bits (197), Expect = 2.2e-11
Identity = 45/113 (39.82%), Postives = 63/113 (55.75%), Query Frame = 0


Query: 101 FRFNLISVSTISAKLPILISFVDDYCLLQDKSSLKMIGRAKLWQGLYTLQPDSLMSENFH 160
           F+FNLIS+S + + LP  + F  + CL+QD    KMIG  ++ +GLY L    L S   H
Sbjct: 403 FQFNLISISKLMSSLPCQLIFTSNKCLIQDLQHQKMIGTVEVIEGLYKLDVLPLNSPTTH 462

Query: 161 --TSTQHTLNSVACNSVSQCN---ISLWHDRLGHPSIRHLTALKSILPCQNFN 209
             +  Q+ ++SV   S+  CN   I +WH R GHPS   L ALK   P  +F+
Sbjct: 463 SVSDLQNIVDSVCKRSILTCNKLPIDIWHFRFGHPSSERLQALKQTYPAIDFD 515

[Close]

BLAST of Lag0026609 vs. NCBI nr
Match: KYP54535.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 80.5 bits (197), Expect = 2.2e-11
Identity = 45/113 (39.82%), Postives = 63/113 (55.75%), Query Frame = 0


Query: 101 FRFNLISVSTISAKLPILISFVDDYCLLQDKSSLKMIGRAKLWQGLYTLQPDSLMSENFH 160
           F+FNLIS+S + + LP  + F  + CL+QD    KMIG  ++ +GLY L    L S   H
Sbjct: 105 FQFNLISISKLMSSLPCQLIFTSNKCLIQDLQHQKMIGTVEVIEGLYKLDVLPLNSPTTH 164

Query: 161 --TSTQHTLNSVACNSVSQCN---ISLWHDRLGHPSIRHLTALKSILPCQNFN 209
             +  Q+ ++SV   S+  CN   I +WH R GHPS   L ALK   P  +F+
Sbjct: 165 SVSDLQNIVDSVCKRSILTCNKLPIDIWHFRFGHPSSERLQALKQTYPAIDFD 217

[Close]

BLAST of Lag0026609 vs. ExPASy TrEMBL
Match: A0A6J1DIP8 (uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020399 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.9e-15
Identity = 57/139 (41.01%), Postives = 78/139 (56.12%), Query Frame = 0


Query: 83  AKVDSNSPSSSGTAHVEEFRFNLISVSTISAKLPILISFVDDYCLLQDKSSLKMIGRAKL 142
           +K  SNS S S  A +   R+NL+ VS ++A   + + F D+ C+LQDKSS KMIG+A+ 
Sbjct: 260 SKSVSNSSSYSRQAFLHTLRYNLLYVSALTADSSVSVLFADNCCILQDKSSSKMIGKAES 319

Query: 143 WQGLYTLQPDSLMSENFHTSTQHTLNSVACNSVSQCNISLWHDRLGHPSIRHLTALKSIL 202
           W GLY      L+S   + +    L  V CNS        WH+RLGHPS +HL ALK++L
Sbjct: 320 WHGLY------LLSVELYAA----LTIVVCNSA----YHTWHNRLGHPSPKHLFALKNVL 379

Query: 203 PCQNFNFQ----PCLICPL 218
              + +      PC I PL
Sbjct: 380 HIDSVSKHDSDFPCEIFPL 384

[Close]

BLAST of Lag0026609 vs. ExPASy TrEMBL
Match: A0A6J1CR17 (uncharacterized protein LOC111013441 OS=Momordica charantia OX=3673 GN=LOC111013441 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-13
Identity = 53/153 (34.64%), Postives = 81/153 (52.94%), Query Frame = 0


Query: 69  MPNPPNMLQSHLTTAKVDSNSPSSSGTAHVEEFRFNLISVSTISAKLPIL-ISFVDDYCL 128
           +PN P  +  +    ++ S+  S  G  ++ EF FNLISV+ +   +P L + F +D C+
Sbjct: 274 LPNKPRFVVEYSGFVRL-SDHLSIHGVLYIPEFYFNLISVNVLLRDMPSLSVEFTNDTCI 333

Query: 129 LQDKSSLKMIGRAKLWQGLYTLQPDSLMSENFHTSTQHTLNSVACNSVSQCNISLWHDRL 188
           +QDKS  K I + +L  GLY L   S  S         T+ S+  ++ +  +  +WH+RL
Sbjct: 334 IQDKSISKTIDKGRLCHGLYLLDNTSECSS--------TVQSICVSAFTLVSFDVWHNRL 393

Query: 189 GHPSIRHLTALKSILPCQNFNFQPCLI--CPLP 219
           GHPS   L ALKS+LP  N + +  L   C  P
Sbjct: 394 GHPSFTRLPALKSVLPVDNCSLEDFLTDSCDFP 417

[Close]

BLAST of Lag0026609 vs. ExPASy TrEMBL
Match: A0A2Z7AHC5 (Integrase catalytic domain-containing protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_24735 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.8e-12
Identity = 46/123 (37.40%), Postives = 68/123 (55.28%), Query Frame = 0


Query: 97  HVEEFRFNLISVSTISAKLPILISFVDDYCLLQDKSSLKMIGRAKLWQGLYTL--QPDSL 156
           HV +F+FNL+S+S  +      + F  D+C  QD S+ K++G  KL+ GLY L   P ++
Sbjct: 309 HVPDFKFNLLSISKFTKDHHCSVVFYPDFCFFQDLSTGKIMGIGKLYNGLYYLAETPQNI 368

Query: 157 MSENFHTSTQHTLNSVACNSVSQCNISLWHDRLGHPSIRHLTALKSILPCQNFNFQPCLI 216
            ++   +S + T  S AC  +   +I++WH R GH SI  L  L  I   QN    PC I
Sbjct: 369 QTDRILSSPKLTCTSFACKDI---DINIWHQRFGHMSISRLQHLPFI--TQNTLNSPCYI 426

Query: 217 CPL 218
           CP+
Sbjct: 429 CPI 426

[Close]

BLAST of Lag0026609 vs. ExPASy TrEMBL
Match: A0A2N9EDE7 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS647 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.0e-11
Identity = 58/158 (36.71%), Postives = 87/158 (55.06%), Query Frame = 0


Query: 69  MPNPPNMLQSHLTTAKVDSNSPSSSGTAHVEEFRFNLISVSTISAKLPILISFVDDYCLL 128
           +PN    L +H+ T K+ S S        V  F FNLISVS +++ L   I F+ + C +
Sbjct: 442 LPNGETALVTHIGTVKI-SESLILVDVLCVPSFSFNLISVSKLTSSLNCCIFFLSNLCFI 501

Query: 129 QDKSSLKMIGRAKLWQGLYTLQ-PDSLMSENFHTSTQHTLNSV--ACNSVSQCNISLWHD 188
           QD    K+IGR K  +GLY L+  DS++  +F + +    +SV  + N+ S  ++ LWH+
Sbjct: 502 QDLVKWKLIGRGKEKEGLYLLEDQDSVIYPSFKSLSSVHKSSVHKSINNRSS-HLQLWHN 561

Query: 189 RLGHPSIRHLTALKSIL-----PCQ-NFNFQPCLICPL 218
           RLGH S  +L  LK+ +     PC  N +   CL+CPL
Sbjct: 562 RLGHASYANLQFLKNCISDLCTPCNVNDDDNHCLVCPL 597

[Close]

BLAST of Lag0026609 vs. ExPASy TrEMBL
Match: A0A438HH41 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Vitis vinifera OX=29760 GN=RE2_421 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-11
Identity = 48/122 (39.34%), Postives = 66/122 (54.10%), Query Frame = 0


Query: 98  VEEFRFNLISVSTISAKLPILISFVDDYCLLQDKSSLKMIGRAKLWQGLYTLQPDSLMSE 157
           V  FR+NL+SVS  +  L + + F  D C++Q+ S  KMIG+      LY L  DS +++
Sbjct: 346 VPTFRYNLLSVSAFTDTLSLSMVFTPDACIIQEPSRGKMIGKGSRKGQLYQLDFDSFVAD 405

Query: 158 NFHTSTQHTLNSVACNSVSQCNI-SLWHDRLGHPSIRHLTALKSILPC-QNFNFQPCLIC 217
                       VA + +   NI SLWH RLGHPS   L  L+SIL    +F+  PC +C
Sbjct: 406 KAF---------VAASRIPTSNILSLWHSRLGHPSFSRLKGLQSILDFDSSFDLTPCNVC 458

The following BLAST results are available for this feature:

BLAST of Lag0026609 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152756.1	1.2e-14	41.01	uncharacterized protein LOC111020399 [Momordica charantia]	[more]
XP_022143573.1	3.0e-13	34.64	uncharacterized protein LOC111013441 [Momordica charantia]	[more]
KZV21171.1	5.7e-12	37.40	hypothetical protein F511_24735 [Dorcoceras hygrometricum]	[more]
KYP54541.1	2.2e-11	39.82	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
KYP54535.1	2.2e-11	39.82	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]

BLAST of Lag0026609 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0026609 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DIP8	5.9e-15	41.01	uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1CR17	1.5e-13	34.64	uncharacterized protein LOC111013441 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A2Z7AHC5	2.8e-12	37.40	Integrase catalytic domain-containing protein OS=Dorcoceras hygrometricum OX=472...	[more]
A0A2N9EDE7	1.0e-11	36.71	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]
A0A438HH41	1.8e-11	39.34	Retrovirus-related Pol polyprotein from transposon RE2 OS=Vitis vinifera OX=2976...	[more]

BLAST of Lag0026609 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 145..217 e-value: 9.4E-9 score: 35.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0026609.1	Lag0026609.1	mRNA