Lag0026530 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0026530
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr10: 38530806 .. 38531245 (+)
RNA-Seq Expression	Lag0026530
Synteny	Lag0026530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAAGGAAAACCTCTCAAATCGTGTTTTGATTGGATCGACTGTGTATGTATGGATCACTAGCAAGAAATCGTTTCTTTTTTCATACCTAAGTTCTGCACGCATTGCAGACGACAAGGTCATGCACGAATGCAAAGTGGCGAATAAGGAACCTGGTGTCAACCCGTCACCGAGAATGGCCTATGTTCCAAGAAAAAATGCTACCTAGCACCTACCACTGAAGTTAGCCTTCATGATTCAGATGTTGTTGTTGCTGACATGCAAACCATTGAAGATGGTCCTCGGGACGAAGAGCTTGAACCAGATAACAATCCCCAAGCTTCTGTTCTTCAACAACCAGAGTATTTAGCTATTGGAAAATCGTCTTCGGTTAATGCAGCTCCTAATACCGGCGGTAGCTCTGCCTCATGGGGACAGCAGGAAGAGGAAAGAGTTTGA

mRNA sequence

ATGATCAAGGAAAACCTCTCAAATCGTGTTTTGATTGGATCGACTGTGTATGTATGGATCACTAGCAAGAAATCGTTTCTTTTTTCATACCTAAGTTCTGCACGCATTGCAGACGACAAGGTCATGCACGAATGCAAAGTGGCGAATAAGGAACCTGATGTTGTTGTTGCTGACATGCAAACCATTGAAGATGGTCCTCGGGACGAAGAGCTTGAACCAGATAACAATCCCCAAGCTTCTGTTCTTCAACAACCAGAGTATTTAGCTATTGGAAAATCGTCTTCGGTTAATGCAGCTCCTAATACCGGCGGTAGCTCTGCCTCATGGGGACAGCAGGAAGAGGAAAGAGTTTGA

Coding sequence (CDS)

ATGATCAAGGAAAACCTCTCAAATCGTGTTTTGATTGGATCGACTGTGTATGTATGGATCACTAGCAAGAAATCGTTTCTTTTTTCATACCTAAGTTCTGCACGCATTGCAGACGACAAGGTCATGCACGAATGCAAAGTGGCGAATAAGGAACCTGATGTTGTTGTTGCTGACATGCAAACCATTGAAGATGGTCCTCGGGACGAAGAGCTTGAACCAGATAACAATCCCCAAGCTTCTGTTCTTCAACAACCAGAGTATTTAGCTATTGGAAAATCGTCTTCGGTTAATGCAGCTCCTAATACCGGCGGTAGCTCTGCCTCATGGGGACAGCAGGAAGAGGAAAGAGTTTGA

Protein sequence

MIKENLSNRVLIGSTVYVWITSKKSFLFSYLSSARIADDKVMHECKVANKEPDVVVADMQTIEDGPRDEELEPDNNPQASVLQQPEYLAIGKSSSVNAAPNTGGSSASWGQQEEERV

Homology

[Close]

BLAST of Lag0026530 vs. NCBI nr
Match: TYK04334.1 (hypothetical protein E5676_scaffold84043G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 3.2e-24
Identity = 70/95 (73.68%), Postives = 74/95 (77.89%), Query Frame = 0


Query: 23  KKSFLFSYLSSARIADDKVMHECKVANKEPDVVVADMQTIEDGPRDEELEPDNNPQASVL 82
           KKSFLF   SSARIAD+KVM      N    V  ADM+TI DGPR EELEPD NPQAS+L
Sbjct: 231 KKSFLF---SSARIADEKVMPVTNAKN----VAAADMETIFDGPRGEELEPDKNPQASLL 290

Query: 83  QQPEYLAIGKSSSVNAAPNTGGSSASWGQQEEERV 118
           Q+P YLAIGKS SV AAPNTGGSSASWGQQEEERV
Sbjct: 291 QEPTYLAIGKSPSVEAAPNTGGSSASWGQQEEERV 318

[Close]

BLAST of Lag0026530 vs. NCBI nr
Match: KAA0059498.1 (hypothetical protein E6C27_scaffold48829G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 3.2e-24
Identity = 70/95 (73.68%), Postives = 74/95 (77.89%), Query Frame = 0


Query: 23  KKSFLFSYLSSARIADDKVMHECKVANKEPDVVVADMQTIEDGPRDEELEPDNNPQASVL 82
           KKSFLF   SSARIAD+KVM      N    V  ADM+TI DGPR EELEPD NPQAS+L
Sbjct: 161 KKSFLF---SSARIADEKVMPVTNAKN----VAAADMETIFDGPRGEELEPDKNPQASLL 220

Query: 83  QQPEYLAIGKSSSVNAAPNTGGSSASWGQQEEERV 118
           Q+P YLAIGKS SV AAPNTGGSSASWGQQEEERV
Sbjct: 221 QEPTYLAIGKSPSVEAAPNTGGSSASWGQQEEERV 248

[Close]

BLAST of Lag0026530 vs. NCBI nr
Match: EEF27683.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 94.7 bits (234), Expect = 5.5e-16
Identity = 51/61 (83.61%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 57  ADMQTIEDGPRDEELEPDNNPQASVLQQPEYLAIGKSSSVNAAPNTGGSSASWGQQEEER 116
           ADMQTIEDGPR EELEPDNNPQA VL++ EYLAIGKS SVNAA NTGGSS S GQQEEE 
Sbjct: 21  ADMQTIEDGPRGEELEPDNNPQAPVLKKSEYLAIGKSPSVNAASNTGGSSPSRGQQEEEL 80

Query: 117 V 118
           V
Sbjct: 81  V 81

[Close]

BLAST of Lag0026530 vs. NCBI nr
Match: KAF3452219.1 (hypothetical protein FNV43_RR08317 [Rhamnella rubrinervis])

HSP 1 Score: 65.5 bits (158), Expect = 3.6e-07
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 46  KVANKEPDVVVADMQTIEDGPRDEELEPDNNPQASVLQQPEYLAI 91
           +V+ ++ DV  A MQTIEDGPR EELEPDNNPQA VLQQPE LAI
Sbjct: 87  EVSLRDSDVAAAGMQTIEDGPRGEELEPDNNPQAPVLQQPESLAI 131

The following BLAST results are available for this feature:

BLAST of Lag0026530 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04334.1	3.2e-24	73.68	hypothetical protein E5676_scaffold84043G00010 [Cucumis melo var. makuwa]	[more]
KAA0059498.1	3.2e-24	73.68	hypothetical protein E6C27_scaffold48829G00010 [Cucumis melo var. makuwa]	[more]
EEF27683.1	5.5e-16	83.61	conserved hypothetical protein [Ricinus communis]	[more]
KAF3452219.1	3.6e-07	73.33	hypothetical protein FNV43_RR08317 [Rhamnella rubrinervis]	[more]

BLAST of Lag0026530 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0026530.1	Lag0026530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane