Lag0026423 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026423
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotransposon gag protein
Locationchr10: 36589029 .. 36591355 (+)
RNA-Seq ExpressionLag0026423
SyntenyLag0026423
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACGAGAAGCTTCATAGTAGCATCCTGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCTTGCAAATGAAGGATCTGATCAAGACCATGACAAAGATAAGAGCTTTCAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGTGCAAAAAAAAAAAAAAAAAAATTCTTGAACTACGTTATGACTTGATCCCTATTCCATAAGGGTACGTAGGCAACTTAAAGAAAACTTTAAGTTCAGTCTCTATAAACAAAAAAAAAAAAAAGTTCTTTGTTGTAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTTGAGGGTTCTCAGTTGTACGACCGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCGCTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGTAGCTTCGCTGGAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTACTTCTCTCCAAGGTCGAAGGTTCTCACGCGCTGCGTTGCAGTTCTTTCTTTGCTTAGCAGTTCCCTCTCACTTTGTATTATCTTTCATTTCTTTTGTCTTCTATAACTGTTTCAACTCAATTCTTTCCCACCCTTTTTAACTTGACCTTCAAGTTCAACTAAAAAATGTGATTTCACTTGCTTAATTCTTGAGATTCTTATTGAGTTTTGTTGCCTATTATGCTTTTGATTCTATTGGTTTATTATTATTTTTATGTTATCTTATTATCTTGTACTCTTGCTCCATTCTTTTGCTCAATGTCTTTTTGTTTTTTGTTTAGATCTATGAAAGAATGGGGAAAATCTTAGGTTATGGCAACATTGGTGGAACTCAAAATCTGTAGGCATCAACTAAAAAAAGGTCATGTCACTAACTTAATTCTTATGATTTATATGAGTTTCCATTGTCGATTATACTTTTATCCATTATCTTCTGCTTGATGGTTTCATGTATTTTTGTTTTGATTCTATGAAAGAATGGGGAGAAATTTTGGTTATGACATTAATAATGAGATTAATTTTATCTTTTGCAACCGTTGATGATACCAATTTTGTGATTATGTACCGTCTTCAAATGGTTTAGTATCGTTATTGCTCGTGGAGTTCAAACTAATATATTAGTTGAGGAAATTAAAATTTTAAGCATAAGGGTATATTTCTCTTTTTCCTCTTGATTGTTGTAACAAAAAAAAATTGTAGAATGATCATTATTTGGTTTCTTTTCTATCGAATCAGAAATATATGTTAATATTACTTTTTTGTAAAGCACGTGATCTATGAGTTTTTGTTTATACTTTTATAAATGTTTCTTATACTATGGTTAGATGATAATGAGGTCATTGTTTGGACCATTGTAGCATTTATTTTGTACCTTGAAAAATGAAAAGGCAAAGGGAAAAAATATTAGAGGATTATATTCCATCTCTTTCCTTTGTAGAACTAACTTGGTTATGGTGTGAACTAAAAAAAAATCGTATGATGCTTATTTTTTGTTTTATGTTTTTGAAAACTTAGCTTGTAAATGACTTCTATATGTGTTTCTTTCTTTTCTTAACTACATTTTTTTATATATTAAATAATTATTGATAATTTATGTGAATATTAAAAGGTGGTATATGAAAATTTTACCAAATATGTATAAAAAGATAGTATATGTGCTTCTTTGTTTTTGTTTTTGTTTTCTTCTACTTTTTTTCCCTCTGTGTCGTTTCTCCTCCTCCCCGAAACTCTCTTTTTTTTTAAAAAAAAAAAAAACAGAAGAAAGGAAGAGAAAGAAGAAGAAAGGAAGAAGAGAAGAAGAGAAGAAGAAGAAAGAAGGAAAAAAAAAATTCCGGCGACCGCCGCCGCCGCTGCCGTTCACCGGCAGCCGGCGGCGGCTGGCCACCGGAGCTGAAGAAGATGGAAGGGGGAAGGAAGAAGATGGGAGGGGGAAGGAAGAAGATGGGAGGGAGAAAGAAGGTGGAGAAGAAAGAAGATAG

mRNA sequence

ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACGAGAAGCTTCATAGTAGCATCCTGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCTTGCAAATGAAGGATCTGATCAAGACCATGACAAAGATAAGAGCTTTCAAATTTGTACGACCGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCGCTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGTAGCTTCGCTGGAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTACTTCTCTCCAAGGTCGAAGAAGAAAGGAAGAGAAAGAAGAAGAAAGGAAGAAGAGAAGAAGAGAAGAAGAAGAAAGAAGGAAAAAAAAAATTCCGGCGACCGCCGCCGCCGCTGCCGTTCACCGGCAGCCGGCGGCGGCTGGCCACCGGAGCTGAAGAAGATGGAAGGGGGAAGGAAGAAGATGGGAGGGGGAAGGAAGAAGATGGGAGGGAGAAAGAAGGTGGAGAAGAAAGAAGATAG

Coding sequence (CDS)

ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACGAGAAGCTTCATAGTAGCATCCTGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCTTGCAAATGAAGGATCTGATCAAGACCATGACAAAGATAAGAGCTTTCAAATTTGTACGACCGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCGCTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGTAGCTTCGCTGGAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTACTTCTCTCCAAGGTCGAAGAAGAAAGGAAGAGAAAGAAGAAGAAAGGAAGAAGAGAAGAAGAGAAGAAGAAGAAAGAAGGAAAAAAAAAATTCCGGCGACCGCCGCCGCCGCTGCCGTTCACCGGCAGCCGGCGGCGGCTGGCCACCGGAGCTGAAGAAGATGGAAGGGGGAAGGAAGAAGATGGGAGGGGGAAGGAAGAAGATGGGAGGGAGAAAGAAGGTGGAGAAGAAAGAAGATAG

Protein sequence

MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNLIILTNLANEGSDQDHDKDKSFQICTTATLFLLQVRRILCGALLHCSLFSQVRWFSRSFAGVPSPQVRRFSRASLQLLLSKVEEERKRKKKKGRREEEKKKKEGKKKFRRPPPPLPFTGSRRRLATGAEEDGRGKEEDGRGKEEDGREKEGGEERR
Homology
BLAST of Lag0026423 vs. NCBI nr
Match: KAA0041771.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-27
Identity = 75/121 (61.98%), Postives = 90/121 (74.38%), Query Frame = 0

Query: 1   MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  +EENQC  ST  R SAF+RLS+STSKK R  TS FDRLK+TNDQ +R+M  L+ 
Sbjct: 398 LSMATKKEENQCPTSTYARTSAFKRLSISTSKKHRPLTSAFDRLKMTNDQQQREMKTLKA 457

Query: 61  KLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNLIILTNLANEGSDQDHDKDKS 120
           K F E N D+K+HS + SRMKRKFSV INTE SL VKP  II TNL NEG ++  D++KS
Sbjct: 458 KPFHEENDDDKIHSRVSSRMKRKFSVDINTEDSLTVKPRFIIFTNLINEGDEKILDENKS 517

Query: 121 F 122
           F
Sbjct: 518 F 518

BLAST of Lag0026423 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 2.3e-27
Identity = 75/120 (62.50%), Postives = 90/120 (75.00%), Query Frame = 0

Query: 1   MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 151 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 210

Query: 61  KLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNLIILTNLANEGSDQDHDKDKS 120
           K F E N D+K+HS + SRMKRK SV INTEGSL VKP  II TN  NEG ++  D++KS
Sbjct: 211 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRFIIFTNPINEGDEKILDENKS 270

BLAST of Lag0026423 vs. NCBI nr
Match: TYK18884.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 5.2e-27
Identity = 74/120 (61.67%), Postives = 91/120 (75.83%), Query Frame = 0

Query: 1   MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 92  LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKA 151

Query: 61  KLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNLIILTNLANEGSDQDHDKDKS 120
           K F E N D+K+HS + SRMKRK S+ INT+GSL VKP LII TN  NEG ++  D++KS
Sbjct: 152 KPFHEENDDDKIHSRVPSRMKRKLSIDINTKGSLIVKPRLIIFTNPINEGDEKILDENKS 211

BLAST of Lag0026423 vs. NCBI nr
Match: KAA0057874.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 6.8e-27
Identity = 74/118 (62.71%), Postives = 88/118 (74.58%), Query Frame = 0

Query: 3   MAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKL 62
           MA  EEENQC  ST TR SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ K 
Sbjct: 1   MATKEEENQCPTSTCTRTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKTLKEKP 60

Query: 63  FDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNLIILTNLANEGSDQDHDKDKS 121
           F E N D+K+H+ + SRMKRK SV INTEGSL VKP  II TN  NEG ++  D++KS
Sbjct: 61  FHEENDDDKIHTRVSSRMKRKLSVDINTEGSLTVKPRFIIFTNPINEGDEKILDENKS 118

BLAST of Lag0026423 vs. NCBI nr
Match: KAA0068201.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21121.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 6.8e-27
Identity = 74/120 (61.67%), Postives = 89/120 (74.17%), Query Frame = 0

Query: 1   MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC M T  + SAF+RLS+STS K R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 262 LSMATKEEENQCPMPTYAQTSAFKRLSISTSNKHRPSTSAFDRLKMTNDQQQREMKSLKA 321

Query: 61  KLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNLIILTNLANEGSDQDHDKDKS 120
           K F E N D+K+HS + SRMKRK SV INTEGSL VKP  II TN  NEG +Q  D++KS
Sbjct: 322 KPFHEKNDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRFIIFTNPINEGDEQILDENKS 381

BLAST of Lag0026423 vs. ExPASy TrEMBL
Match: A0A5A7TJH2 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G001260 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 6.6e-28
Identity = 75/121 (61.98%), Postives = 90/121 (74.38%), Query Frame = 0

Query: 1   MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  +EENQC  ST  R SAF+RLS+STSKK R  TS FDRLK+TNDQ +R+M  L+ 
Sbjct: 398 LSMATKKEENQCPTSTYARTSAFKRLSISTSKKHRPLTSAFDRLKMTNDQQQREMKTLKA 457

Query: 61  KLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNLIILTNLANEGSDQDHDKDKS 120
           K F E N D+K+HS + SRMKRKFSV INTE SL VKP  II TNL NEG ++  D++KS
Sbjct: 458 KPFHEENDDDKIHSRVSSRMKRKFSVDINTEDSLTVKPRFIIFTNLINEGDEKILDENKS 517

Query: 121 F 122
           F
Sbjct: 518 F 518

BLAST of Lag0026423 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-27
Identity = 75/120 (62.50%), Postives = 90/120 (75.00%), Query Frame = 0

Query: 1   MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 151 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 210

Query: 61  KLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNLIILTNLANEGSDQDHDKDKS 120
           K F E N D+K+HS + SRMKRK SV INTEGSL VKP  II TN  NEG ++  D++KS
Sbjct: 211 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRFIIFTNPINEGDEKILDENKS 270

BLAST of Lag0026423 vs. ExPASy TrEMBL
Match: A0A5D3D5Q0 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00920 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.5e-27
Identity = 74/120 (61.67%), Postives = 91/120 (75.83%), Query Frame = 0

Query: 1   MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 92  LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKA 151

Query: 61  KLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNLIILTNLANEGSDQDHDKDKS 120
           K F E N D+K+HS + SRMKRK S+ INT+GSL VKP LII TN  NEG ++  D++KS
Sbjct: 152 KPFHEENDDDKIHSRVPSRMKRKLSIDINTKGSLIVKPRLIIFTNPINEGDEKILDENKS 211

BLAST of Lag0026423 vs. ExPASy TrEMBL
Match: A0A5A7VRG7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G001010 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.3e-27
Identity = 74/120 (61.67%), Postives = 89/120 (74.17%), Query Frame = 0

Query: 1   MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC M T  + SAF+RLS+STS K R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 262 LSMATKEEENQCPMPTYAQTSAFKRLSISTSNKHRPSTSAFDRLKMTNDQQQREMKSLKA 321

Query: 61  KLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNLIILTNLANEGSDQDHDKDKS 120
           K F E N D+K+HS + SRMKRK SV INTEGSL VKP  II TN  NEG +Q  D++KS
Sbjct: 322 KPFHEKNDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRFIIFTNPINEGDEQILDENKS 381

BLAST of Lag0026423 vs. ExPASy TrEMBL
Match: A0A5A7URU7 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G001720 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.3e-27
Identity = 74/118 (62.71%), Postives = 88/118 (74.58%), Query Frame = 0

Query: 3   MAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKL 62
           MA  EEENQC  ST TR SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ K 
Sbjct: 1   MATKEEENQCPTSTCTRTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKTLKEKP 60

Query: 63  FDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNLIILTNLANEGSDQDHDKDKS 121
           F E N D+K+H+ + SRMKRK SV INTEGSL VKP  II TN  NEG ++  D++KS
Sbjct: 61  FHEENDDDKIHTRVSSRMKRKLSVDINTEGSLTVKPRFIIFTNPINEGDEKILDENKS 118

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0041771.11.4e-2761.98retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0044978.12.3e-2762.50retrotransposon gag protein [Cucumis melo var. makuwa][more]
TYK18884.15.2e-2761.67gag protease polyprotein [Cucumis melo var. makuwa][more]
KAA0057874.16.8e-2762.71gag protease polyprotein [Cucumis melo var. makuwa][more]
KAA0068201.16.8e-2761.67retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21121.1 retrotranspos... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TJH26.6e-2861.98Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5A7TQ061.1e-2762.50Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5D3D5Q02.5e-2761.67Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7VRG73.3e-2761.67Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7URU73.3e-2762.71Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 171..200
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..255
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..202
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 223..255
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026423.1Lag0026423.1mRNA