Lag0026291 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0026291
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	CCHC-type domain-containing protein
Location	chr10: 34017202 .. 34017930 (+)
RNA-Seq Expression	Lag0026291
Synteny	Lag0026291

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGCAAGGAAGATCGGCAACAATCTTGGGGAATTCCTCGAAATGGATAAAGAAAAGCTAAACTCTTCATGGGGCAGCAACATTAGAATTAAGGTCAGATTAGATATATCTAGACCTTTACAAAGAGGTTTTATGCTCAGAACAAAGGGACTCGAAGGAAATTGTTGGATTACAATTAGATACGAAAAGATGCCAAACTTTTGTTTTCTATGTAGAAGGATTAGTCATATGGCCAAGGAATGCTTAAACAAGAAGGATGTTGAGGAAGGGAAAAAAAATAGTCATGAATTTGGTATGTGGATGAAATTCCAAGGCTTTTCTAAGCTAGCCAAGTTTCAGAAGTTTCCAAACAGAGAAGCGAACTTTTCAAAGGAAAAAATGCTTGATGATGGAGAGAAAAGAGAATAGTCAGAAAGAACTAAGGAAGCTCTAGATGTGGGTCTGAATCAAGAAAGCCCTGTAACCAAGGAGATGGAAAACAGAGAGAGATCCAGAAATGAGAAAGATGGAGAGGAAGATATTATTAGACGAATGGAACAGGATGATGAAGCTGGAGATTGGGAAGCGCTACATATGAGCTTGGACGACGTAAGGCCTGAAATCCATAAGAGTACATCTCCTGGAAAAAAAACATTGACCAAGCTAGTATGGGATGGGAACTCCCAAAAAGGAAAGAATGAGTTGGAAAAGAAGACAGAGAACAGGGCAACCAGAGGATTATCCTAG

mRNA sequence

ATGATTGCAAGGAAGATCGGCAACAATCTTGGGGAATTCCTCGAAATGGATAAAGAAAAGCTAAACTCTTCATGGGGCAGCAACATTAGAATTAAGGTCAGATTAGATATATCTAGACCTTTACAAAGAGGTTTTATGCTCAGAACAAAGGGACTCGAAGGAAATTGTTGGATTACAATTAGATACGAAAAGATGCCAAACTTTTGTTTTCTATGTAGAAGGATTAGTCATATGGCCAAGGAATGCTTAAACAAGAAGGATGTTGAGGAAGGGAAAAAAAATAGTCATGAATTTGAAAGAACTAAGGAAGCTCTAGATGTGGGTCTGAATCAAGAAAGCCCTGTAACCAAGGAGATGGAAAACAGAGAGAGATCCAGAAATGAGAAAGATGGAGAGGAAGATATTATTAGACGAATGGAACAGGATGATGAAGCTGGAGATTGGGAAGCGCTACATATGAGCTTGGACGACGTAAGGCCTGAAATCCATAAGAGTACATCTCCTGGAAAAAAAACATTGACCAAGCTAGTATGGGATGGGAACTCCCAAAAAGGAAAGAATGAGTTGGAAAAGAAGACAGAGAACAGGGCAACCAGAGGATTATCCTAG

Coding sequence (CDS)

ATGATTGCAAGGAAGATCGGCAACAATCTTGGGGAATTCCTCGAAATGGATAAAGAAAAGCTAAACTCTTCATGGGGCAGCAACATTAGAATTAAGGTCAGATTAGATATATCTAGACCTTTACAAAGAGGTTTTATGCTCAGAACAAAGGGACTCGAAGGAAATTGTTGGATTACAATTAGATACGAAAAGATGCCAAACTTTTGTTTTCTATGTAGAAGGATTAGTCATATGGCCAAGGAATGCTTAAACAAGAAGGATGTTGAGGAAGGGAAAAAAAATAGTCATGAATTTGAAAGAACTAAGGAAGCTCTAGATGTGGGTCTGAATCAAGAAAGCCCTGTAACCAAGGAGATGGAAAACAGAGAGAGATCCAGAAATGAGAAAGATGGAGAGGAAGATATTATTAGACGAATGGAACAGGATGATGAAGCTGGAGATTGGGAAGCGCTACATATGAGCTTGGACGACGTAAGGCCTGAAATCCATAAGAGTACATCTCCTGGAAAAAAAACATTGACCAAGCTAGTATGGGATGGGAACTCCCAAAAAGGAAAGAATGAGTTGGAAAAGAAGACAGAGAACAGGGCAACCAGAGGATTATCCTAG

Protein sequence

MIARKIGNNLGEFLEMDKEKLNSSWGSNIRIKVRLDISRPLQRGFMLRTKGLEGNCWITIRYEKMPNFCFLCRRISHMAKECLNKKDVEEGKKNSHEFERTKEALDVGLNQESPVTKEMENRERSRNEKDGEEDIIRRMEQDDEAGDWEALHMSLDDVRPEIHKSTSPGKKTLTKLVWDGNSQKGKNELEKKTENRATRGLS

Homology

[Close]

BLAST of Lag0026291 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 88.2 bits (217), Expect = 8.9e-14
Identity = 33/81 (40.74%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 2   IARKIGNNLGEFLEMDKEKLNSSWGSNIRIKVRLDISRPLQRGFMLRTKGLEGNCWITIR 61
           +A ++GN +G F+++D  +   SWG+++RI+V +DI++PL+RG  +   G  G CWI I+
Sbjct: 144 MAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQ 203

Query: 62  YEKMPNFCFLCRRISHMAKEC 83
           YE++P+FC+ C  I H + +C
Sbjct: 204 YERLPDFCYFCGVIGHSSHDC 224

[Close]

BLAST of Lag0026291 vs. NCBI nr
Match: XP_030505014.1 (uncharacterized protein LOC115719985 [Cannabis sativa])

HSP 1 Score: 85.9 bits (211), Expect = 4.4e-13
Identity = 35/83 (42.17%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 1   MIARKIGNNLGEFLEMDKEKLNSSWGSNIRIKVRLDISRPLQRGFMLRTKGLEGNCWITI 60
           ++A  +GN +GEFL++ +E L+  WG  +RI+VRL I +PL RG M+    ++ + WI  
Sbjct: 141 ILATALGNIIGEFLDVHEESLDEGWGPFLRIRVRLPIDKPLLRGRMISLPRIKDDFWIDF 200

Query: 61  RYEKMPNFCFLCRRISHMAKECL 84
           RYE++P FCF C R+ H  ++C+
Sbjct: 201 RYERLPEFCFECGRLGHPFEKCV 223

[Close]

BLAST of Lag0026291 vs. NCBI nr
Match: MCH84359.1 (zinc CCHC-type-like protein [Trifolium medium])

HSP 1 Score: 85.9 bits (211), Expect = 4.4e-13
Identity = 49/134 (36.57%), Postives = 81/134 (60.45%), Query Frame = 0


Query: 2   IARKIGNNLGEFLEMDKEKLNSSWGSNIRIKVRLDISRPLQRGFMLRTKGLEGNCWITIR 61
           +A+K+GNNLG F EMD ++ N   G  +RI+  LD+ +PL+RG  L+ +G +   W+  +
Sbjct: 96  MAKKLGNNLGTFEEMDMKECN-RMGKFLRIRALLDLRKPLKRGSKLKFQGKD--IWVDYK 155

Query: 62  YEKMPNFCFLCRRISHMAKECLNKKDVEEGKKNSHEFERTKEALDVGLNQESPVTKEMEN 121
           YE++PNFCF C RI H  K+C   ++VE+  ++++  +R   AL++      P T   +N
Sbjct: 156 YERLPNFCFGCGRIGHQMKDC---EEVEDHDEDTYSGQRKTLALELXXXXXFPSTSNSKN 215

Query: 122 RERSRNEKDGEEDI 136
              S   K+ EE++
Sbjct: 216 -HNSEGAKEVEEEV 222

[Close]

BLAST of Lag0026291 vs. NCBI nr
Match: XP_042952131.1 (uncharacterized protein LOC122289219 [Carya illinoinensis])

HSP 1 Score: 85.9 bits (211), Expect = 4.4e-13
Identity = 36/81 (44.44%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 2   IARKIGNNLGEFLEMDKEKLNSSWGSNIRIKVRLDISRPLQRGFMLRTKGLEGNCWITIR 61
           + R IGN +G   E+D+E+  ++WG  +RI+VR+DIS+PL RG  ++  G  G CWI   
Sbjct: 142 VGRIIGNKIGFVEEVDEEQGEAAWGEFMRIRVRMDISQPLMRGVRVKL-GQYGICWIRFA 201

Query: 62  YEKMPNFCFLCRRISHMAKEC 83
           YE++PNFC+ C ++ H  K+C
Sbjct: 202 YERLPNFCYWCGKLGHQFKDC 221

[Close]

BLAST of Lag0026291 vs. NCBI nr
Match: KAF4349800.1 (hypothetical protein F8388_001078 [Cannabis sativa])

HSP 1 Score: 85.5 bits (210), Expect = 5.7e-13
Identity = 34/84 (40.48%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 1   MIARKIGNNLGEFLEMDKEKLNSSWGSNIRIKVRLDISRPLQRGFMLRTKGLEGNCWITI 60
           M+A  +GN +GEFLE+  +  N  WG  +RI+V+L +++PL RG M++   +    WI  
Sbjct: 114 MLAEALGNLIGEFLEVFDDSTNEGWGPFLRIRVKLCVTKPLPRGRMIKLPNIRDEFWIDF 173

Query: 61  RYEKMPNFCFLCRRISHMAKECLN 85
           RYE++P FCF C R+ H  ++C++
Sbjct: 174 RYERLPVFCFECGRLGHPFEQCVS 197

[Close]

BLAST of Lag0026291 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.3e-14
Identity = 33/81 (40.74%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 2   IARKIGNNLGEFLEMDKEKLNSSWGSNIRIKVRLDISRPLQRGFMLRTKGLEGNCWITIR 61
           +A ++GN +G F+++D  +   SWG+++RI+V +DI++PL+RG  +   G  G CWI I+
Sbjct: 144 MAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQ 203

Query: 62  YEKMPNFCFLCRRISHMAKEC 83
           YE++P+FC+ C  I H + +C
Sbjct: 204 YERLPDFCYFCGVIGHSSHDC 224

[Close]

BLAST of Lag0026291 vs. ExPASy TrEMBL
Match: A0A803PIB6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-13
Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 2   IARKIGNNLGEFLEMDKEKLNSSWGSNIRIKVRLDISRPLQRGFMLRTKGLEGNCWITIR 61
           +AR +GN LGEF+ + ++ LN  WGS +R +VRLDI++PL RG M+    ++   W+  R
Sbjct: 145 LARSLGNLLGEFISVHEDSLNEGWGSFLRFRVRLDITKPLLRGKMITLPRVKDEFWVEFR 204

Query: 62  YEKMPNFCFLCRRISHMAKEC 83
           YE++P +C  C  I H+ ++C
Sbjct: 205 YERLPEYCMECGLIGHLYQKC 225

[Close]

BLAST of Lag0026291 vs. ExPASy TrEMBL
Match: A0A392MB81 (Zinc CCHC-type-like protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0005191 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.1e-13
Identity = 49/134 (36.57%), Postives = 81/134 (60.45%), Query Frame = 0


Query: 2   IARKIGNNLGEFLEMDKEKLNSSWGSNIRIKVRLDISRPLQRGFMLRTKGLEGNCWITIR 61
           +A+K+GNNLG F EMD ++ N   G  +RI+  LD+ +PL+RG  L+ +G +   W+  +
Sbjct: 96  MAKKLGNNLGTFEEMDMKECN-RMGKFLRIRALLDLRKPLKRGSKLKFQGKD--IWVDYK 155

Query: 62  YEKMPNFCFLCRRISHMAKECLNKKDVEEGKKNSHEFERTKEALDVGLNQESPVTKEMEN 121
           YE++PNFCF C RI H  K+C   ++VE+  ++++  +R   AL++      P T   +N
Sbjct: 156 YERLPNFCFGCGRIGHQMKDC---EEVEDHDEDTYSGQRKTLALELXXXXXFPSTSNSKN 215

Query: 122 RERSRNEKDGEEDI 136
              S   K+ EE++
Sbjct: 216 -HNSEGAKEVEEEV 222

[Close]

BLAST of Lag0026291 vs. ExPASy TrEMBL
Match: A0A803PZC2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.1e-13
Identity = 35/83 (42.17%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 1   MIARKIGNNLGEFLEMDKEKLNSSWGSNIRIKVRLDISRPLQRGFMLRTKGLEGNCWITI 60
           ++A  +GN +GEFL++ +E L+  WG  +RI+VRL I +PL RG M+    ++ + WI  
Sbjct: 141 ILATALGNIIGEFLDVHEESLDEGWGPFLRIRVRLPIDKPLLRGRMISLPRIKDDFWIDF 200

Query: 61  RYEKMPNFCFLCRRISHMAKECL 84
           RYE++P FCF C R+ H  ++C+
Sbjct: 201 RYERLPEFCFECGRLGHPFEKCV 223

[Close]

BLAST of Lag0026291 vs. ExPASy TrEMBL
Match: A0A803QBH3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.1e-13
Identity = 35/83 (42.17%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 1   MIARKIGNNLGEFLEMDKEKLNSSWGSNIRIKVRLDISRPLQRGFMLRTKGLEGNCWITI 60
           ++A  +GN +GEFL++ +E L+  WG  +RI+VRL I +PL RG M+    ++ + WI  
Sbjct: 141 ILATALGNIIGEFLDVHEESLDEGWGPFLRIRVRLPIDKPLLRGRMISLPRIKDDFWIDF 200

Query: 61  RYEKMPNFCFLCRRISHMAKECL 84
           RYE++P FCF C R+ H  ++C+
Sbjct: 201 RYERLPEFCFECGRLGHPFEKCV 223

[Close]

BLAST of Lag0026291 vs. TAIR 10
Match: AT5G36228.1 (nucleic acid binding;zinc ion binding )

HSP 1 Score: 47.4 bits (111), Expect = 1.6e-05
Identity = 26/77 (33.77%), Postives = 39/77 (50.65%), Query Frame = 0


Query: 6   IGNNLGEFLEMDKEKLNSSWGSNIRIKVRLDISRPLQRGFMLRTKGLEGNCWITIRYEKM 65
           I + LGE + MD  +  +S  + IR+KVR+D + PL+    +R    E    I   YEK+
Sbjct: 143 IASTLGEVVAMDFNEETTSQITFIRVKVRMDFTEPLRFFRRVRFASRE-RAMIGFEYEKL 202

Query: 66  PNFCFLCRRISHMAKEC 83
              C  C R++H    C
Sbjct: 203 QRVCTNCCRVNHQVSHC 218

The following BLAST results are available for this feature:

BLAST of Lag0026291 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156185.1	8.9e-14	40.74	uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha...	[more]
XP_030505014.1	4.4e-13	42.17	uncharacterized protein LOC115719985 [Cannabis sativa]	[more]
MCH84359.1	4.4e-13	36.57	zinc CCHC-type-like protein [Trifolium medium]	[more]
XP_042952131.1	4.4e-13	44.44	uncharacterized protein LOC122289219 [Carya illinoinensis]	[more]
KAF4349800.1	5.7e-13	40.48	hypothetical protein F8388_001078 [Cannabis sativa]	[more]

BLAST of Lag0026291 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0026291 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DU55	4.3e-14	40.74	uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A803PIB6	1.6e-13	41.98	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A392MB81	2.1e-13	36.57	Zinc CCHC-type-like protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_000...	[more]
A0A803PZC2	2.1e-13	42.17	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803QBH3	2.1e-13	42.17	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of Lag0026291 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G36228.1	1.6e-05	33.77	nucleic acid binding;zinc ion binding	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 122..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..135
None	No IPR available	PANTHER	PTHR31286:SF26	BNAC07G15150D PROTEIN	coord: 3..190
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 35..83 e-value: 8.1E-11 score: 41.5
IPR040256	Uncharacterized protein At4g02000-like	PANTHER	PTHR31286	GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE	coord: 3..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0026291.1	Lag0026291.1	mRNA