Lag0026241 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0026241
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Leucine-rich repeat (LRR) family protein
Location	chr10: 33123734 .. 33126430 (+)
RNA-Seq Expression	Lag0026241
Synteny	Lag0026241

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCTAAGACTACTAGAGGCAAAAGACTGGTGGGAGCCTTCAGGAGAATTCTCTGAGAGTAGGAGTGTTGGGGTTGGTGCCCTAAAACTCGTAGATAGTAAATGAAACAAATAGTTATATACTTGTTCGATAAAGTCGTTATTTGAATTTTGTTCACTCAAGTTATTAAATGAGTGAATTGCACGTTAAATAACCCAAATCCAACAAACTAGTATCCTTGGCTATGACATGAGTGCTTGAACTATATGTTGTGACATAAATATGGATCACACTACAACAAATTATAGCTTTAATGTCGGACAGAAAAATGGGCGCGCAGCTTTTAATGTCAGACAAAAAAATGCGCGGGACTTTTAATGTCGGACGCTCCATTTTGAAATTTTTGGGCTTTAATGTCGGGCAATGCCCGACATTAAAAGATATTATTTTATTTTATTTTTTAAAACGTTAAAAATAAAAAAGGTAAAAAGAAAAGTTTTTCTCTCTCCCCAACACGCGACAGACAACCTCCTATCCCCGAAAAAACCCAACTGAAACCCTCGATATCTCTTTCCCTTCAACCATCGACGGCGACTGGGGATCTCATCGACGACGACTAGGTCTCACCGACGACGACTCCATGACTACATTTCAGACCAATTTTCTCTTCTCATCGACGGTGACGGCGTCATTTCTTCTCACCGATGGCGACAACAACATTTCTCTTCTCATCTCCAGTAAGTGGGTTTTCGTGGTGGTCGTAGTTCCAGATCTAACTTTGTTCGGGTTCTTCTTTGTTCGTGGGTACGAATTAGTGGTGGTCGTGGTCGTTTGTGCGTAGATTTGAGGTCGTGGGTAGGGAGGTCAATAAGCTCCTTAACAACTGGAAGATTCACTTGTAGTTTACATGAATCTATCTGCTTGGTATGAAGAAATAGCCTTCTTTAAACAAATTCATTCTCTTGATTGTTCTTCCACTGTGGTTTGTGGTTTTCAGTTTCCCCTCTTGCATCCGGGAGGAGAAGAATTTGTCTACGAGAGTTGCTCGTCTCTTTATTCCTCTGTGGGCTCCATTGAAGGGTCTTTTACGTTTTTCCCTAGAAGGTACTTCATATATGATATATTCTCCCATTTTGTTCTTATCCATAGCTTTAATTAGGATTTTAAATTTGGTTGCTTTAGTTTATGTTTTTAGTTGAGTTTAAGTAGAAGTTGAGGAATACTTGAATTAAAGTTTAAGTAGAAGTTGAGGAATACTTGAATTAAAGTTTAAGTAGAAGTCGAACTCATGTGGGCATTCACCTTGAACCTCAAATGAATCAAAGTTCTTAGGTATTTTACCTTCGATTTGATCATTCCAATGTACCCTGTATTTGATGCCCTAGCATGTGCGGCGACTTCCTCCACTTCTTTGTTTATTTTACAATAACTTTATCTTTGCAAGTGTTGTTCTCTGTGTGACTTTCATGATTCATATTTTCCTTCAATTTTTATGTTAGATATAGTAAAAGTACATTTACTACTCATATTTCTTTTGATTTCTTTAGGATCATTTTGTCTCTATTGTGTTCTTGTTTTATCTTCTTCCATGATGTATCTTTAAGATAAATAAACTAATTTGTCAAACTTTTGTCATTAAAGAACTGAAGCAATTTCAATGTTGGTGCTCAAATGCCATGGTTGTGGGAGCAAAGTTTGTGCTCTTCATGATATTATGGGAAAATGAAGGAAAACAAAGATTGGTGTGTAATCTCTTCCACCCCAATATTTTGTGTGTTTATTAGAGTTTCTGCCGTTACTTCTTTGATCGAGTTTCAGATGAAGAAATGGTAGAGTGATAAAAGGGGGATAAGAAGAAATCTGAGGACTCTACAAGGTTAGAAAAAGTGTCATTTACCTTGATTTCTCTTTTTATAAAAAAAAAGGAAATGAGAGATAAATTGTGCTTTTAGTGTTAGAGATATGTAACAATCTGATGAATGTTGTAAGTTTCTTAGTTTAAGTCATTTGGAATATTATTTAAAAAAACGTCATTTGGAATATAGAGGCATTTCTTAGATTTTATTTCCTTCTCCTTTTTTGTTGGTTAGGAATGGAAAATTAAATGTTGAAAATGGTCTAATTAGTAGTTTTTCTTTTCAAGGAAGGTAACACAAGATGGTGAAGACACCAGTATGTTAAAGGAAGACCACCAACCAAGGTGAGTGCTCAACAGTTGTTGAAACAGAAGGTGGTTCTTGCATTGAACAAGCTTGCAAATCGAGACACTTACAAAATTGTTTTGATGAGCTTGAAAAAACAGGTGAGTGCATAGCCACATATATGATTATTTCCTCTTTTCTTGACTTGTATTTTGGATATAGATTCAGAATAGAAAAGCACGGTTCGATAGGAATGCATTCGACTAATGGGGACTCTAGCCAAATTTCATGAAGGTCTTATTTTTTTTAATTAAAATATATAGTTTTTATTTCTGTACATTAACCTTAATTAATGAACTTGCAAACTGCTCAAAGCTGACAAAGCTTGATGTGGAGGCAATGAGAAAGAATATTAATTTTAATAATGCTTAGTTAAAAACATGTATGTTTGGCGTAGTAATGGTATCAATCTAACCTTTTTGTTTGGCAGGGAAACAAGATAACGATGATATCCAAAAATTTGATTGCATCATGGACTATGCTCACTGAATTGAATACATGTAAATTCATCTGA

mRNA sequence

ATGACTCTAAGACTACTAGAGGCAAAAGACTGGTGGGAGCCTTCAGGAGAATTCTCTGAGAGTAGGAGTGTTGGGACAACCTCCTATCCCCGAAAAAACCCAACTGAAACCCTCGATATCTCTTTCCCTTCAACCATCGACGGCGACTGGGGATCTCATCGACGACGACTAGGTCTCACCGACGACGACTCCATGACTACATTTCAGACCAATTTTCTCTTCTCATCGACGGTGACGGCGTCATTTCTTCTCACCGATGGCGACAACAACATTTCTCTTCTCATCTCCAGTAAGTGGGTTTTCGTGGTGGTCGTAGTTCCAGATCTAACTTTGTTCGGGTTCTTCTTTGTTCGTGGTTTCCCCTCTTGCATCCGGGAGGAGAAGAATTTGTCTACGAGAGTTGCTCGTCTCTTTATTCCTCTGTGGGCTCCATTGAAGGGTCTTTTACGTTTTTCCCTAGAAGGAAGACCACCAACCAAGGTGAGTGCTCAACAGTTGTTGAAACAGAAGGTGGTTCTTGCATTGAACAAGCTTGCAAATCGAGACACTTACAAAATTGTTTTGATGAGCTTGAAAAAACAGGGAAACAAGATAACGATGATATCCAAAAATTTGATTGCATCATGGACTATGCTCACTGAATTGAATACATGTAAATTCATCTGA

Coding sequence (CDS)

ATGACTCTAAGACTACTAGAGGCAAAAGACTGGTGGGAGCCTTCAGGAGAATTCTCTGAGAGTAGGAGTGTTGGGACAACCTCCTATCCCCGAAAAAACCCAACTGAAACCCTCGATATCTCTTTCCCTTCAACCATCGACGGCGACTGGGGATCTCATCGACGACGACTAGGTCTCACCGACGACGACTCCATGACTACATTTCAGACCAATTTTCTCTTCTCATCGACGGTGACGGCGTCATTTCTTCTCACCGATGGCGACAACAACATTTCTCTTCTCATCTCCAGTAAGTGGGTTTTCGTGGTGGTCGTAGTTCCAGATCTAACTTTGTTCGGGTTCTTCTTTGTTCGTGGTTTCCCCTCTTGCATCCGGGAGGAGAAGAATTTGTCTACGAGAGTTGCTCGTCTCTTTATTCCTCTGTGGGCTCCATTGAAGGGTCTTTTACGTTTTTCCCTAGAAGGAAGACCACCAACCAAGGTGAGTGCTCAACAGTTGTTGAAACAGAAGGTGGTTCTTGCATTGAACAAGCTTGCAAATCGAGACACTTACAAAATTGTTTTGATGAGCTTGAAAAAACAGGGAAACAAGATAACGATGATATCCAAAAATTTGATTGCATCATGGACTATGCTCACTGAATTGAATACATGTAAATTCATCTGA

Protein sequence

MTLRLLEAKDWWEPSGEFSESRSVGTTSYPRKNPTETLDISFPSTIDGDWGSHRRRLGLTDDDSMTTFQTNFLFSSTVTASFLLTDGDNNISLLISSKWVFVVVVVPDLTLFGFFFVRGFPSCIREEKNLSTRVARLFIPLWAPLKGLLRFSLEGRPPTKVSAQQLLKQKVVLALNKLANRDTYKIVLMSLKKQGNKITMISKNLIASWTMLTELNTCKFI

Homology

[Close]

BLAST of Lag0026241 vs. TAIR 10
Match: AT3G15410.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 43.1 bits (100), Expect = 3.3e-04
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 0


Query: 188 LMSLKKQGNKITMISKNLIASWTMLTELNTCK 220
           L  L  +GNK+T +S+N IASWTML ELN CK
Sbjct: 162 LSKLDVEGNKLTALSENHIASWTMLAELNACK 193

[Close]

BLAST of Lag0026241 vs. TAIR 10
Match: AT3G15410.2 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 43.1 bits (100), Expect = 3.3e-04
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 0


Query: 188 LMSLKKQGNKITMISKNLIASWTMLTELNTCK 220
           L  L  +GNK+T +S+N IASWTML ELN CK
Sbjct: 168 LSKLDVEGNKLTALSENHIASWTMLAELNACK 199

The following BLAST results are available for this feature:

BLAST of Lag0026241 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0026241 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0026241 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0026241 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15410.1	3.3e-04	62.50	Leucine-rich repeat (LRR) family protein	[more]
AT3G15410.2	3.3e-04	62.50	Leucine-rich repeat (LRR) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0026241.1	Lag0026241.1	mRNA