Lag0026240 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0026240
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Transposon Ty1-GR1 Gag-Pol polyprotein
Location	chr10: 33112000 .. 33123172 (+)
RNA-Seq Expression	Lag0026240
Synteny	Lag0026240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCAAATTTCTCTTAGGAATTTGCCCCTCGCTCCACGTGACGATCAATAGTGAATTTGTAAGGTAGCGGGAAAGATGTGACCTGCAAGACGAGCAAACGCTGCACACCGGTGTGGTGTAGACCACACACACTCCGATGCTTAAGTTAGCCTTGGCCGAAAAACACGTAGAATGTATTTAGGGATTGATGTTTTGCATACCTGAATGCGTGCGTGGTGTCCCTTTTATAAGCTCTCCTAGGGTTTTCGCTGCTACTGATCTCCTAGCGCTCATCGGACCTTTGGCCCTGGTCGGCCTCGGCAGTGGGCCGAGGCTGACCTCATCCTCGGCCTCGACAATGGCCGAGGTCGAGCGTGGTCGTCGTGGGCCGGAAGGAGCTCCAGCCCTTCGCTTCGTCGGTTTGCCTTCTTTTGACTTTGGGCCTATTCAGTATAAGATAATGTTGAATAGTTTTGCCCATAACACAAGGTATTCCAAATGTGCCTTTAATTTTTGTTGAAGTGTTAGGTCCTTATTTGGTTCGAAATGCGTGCCATAGAAGTATCAAAATCGGATTAGACTTTGTTTTGTATTTTTCCATGCGTCAAGGAGAGAGAGGCTGATGCAATGTATCAATCACAAACTCGTTAAGCCCATGCTTATTCTTTATTCTATGTTGTTTTTGTATTTTAGCTTTGGAAATATATTATGGGGCCATTTGTTTGAAGTCGAACAGCTTATCCAAGGATCTTTTTTCAAGCGTGACAAAAAGTTTCTACATGTTCTAGTCTCTATCAGACGTGTTTCGAAGAGGCCAGAAATTTCTCATAAATAACTATAATATTAAAGAGTCATAATTTAGAAGGAAAAAAAAAATCTCCAATTCATTTATAGGGAAATGAGTGTGGAGAATAAATTTTCGTCAAGTTTGAACTTCATTCTAGTTTTTGAACTCTTAGGTATAATGTATTTGGTTGTCTACACTTTCAAAATAATGGTCTATTTTAGTCTTTCAATTTTATTTTATTTATTTATTTAAAAAAAAACATTTTAGATCTCACTTTTATTTTGCTTTTGACAGTAGCATGACTTTGAGTATACATATTTGATGTGTCAACGTGAACACTTATCGAGGTAACATAGACTAGTGGTTGAAGTCATTGGCTTAGTAGAATAAGGAGGCAAAATAATAACAAATTAACAATAACTAAAATTATTAATATTTAAGGCCCCGTTTAATAACCATTTAGTTTTTTATTTTTTGTTTTTGAAAATTAAGCTTATACATATATACTTCCACCAATAACTTTCTTGGTTTTAGTATCAATCTTCTACCTTGTTTTCAAAAACCAAATCCAATATTGGAAAAAAAAAGTAGTTTTCAAAAACTTATTTTTGTTTTAAAAATTTGACTGGGAATTCAAATGCAAACTTAACTAGGATGAACGCCATGGTAGGGAATTAAGGAGAAAACAAACATAATTTTCAAAAACCAAAAACAAAAAATCAAATGGTTATCAAATGAGACCTAAACGTTTAGAAACTTAACATTTAAGAAATTCATAAATTAAAGGGCAAAATACACTTTTGGTCCCTGAAGTTTGAGCTTGATGTCTATTTGGTTCCTGAAGTTTAAAAAGTGACACTTTAGTCCCTGGGTTTGAAAAATAGTTCTAAATGGTCCAGTTAATTTGACCGTTAGTTGATTAACAAAAAAAAATAAAAAATGATGTGGCATATTGAGGTGGCACACTTCACTTGAGGTGATCAATTTAATAATTTTATATTATTATTTTAAGATTACATGTCATTTTCTTGTTTTTTCCCCTCTTTCCCTTTCTGTCTCTTCCCTTATCTTCCTTCTCCCCTCCGTTCTCCTTCTTCTCCCCTTTTCCCTCTCCTCTATTCCAACCAATCCATTACAAATCCGTACGCGGTCGTTGTACTTGTCTCTCTCAGCGGCATGCTCATGTGTTGTGTCTGCTGTTCTAATCTTGGCTAGCAATCTTCTGGACTTCCAAATTAAAACATATTTGACCATAATTCCGATTCAATCAAAAGGAGCTTTGTTGAAAACCCAAGAGAGTTTTTTTTTTAAGCCAGGGATGGAACTGTGGAAGGTCAACTTTTTTCTTGGGGACCAGGAAAGGGTATAGTTTAGTATATAGAAAACAATCTTATTAGAAAAATATAGAGATAGACAAAAGAGACTAAAGAGAGAGAGAAGACGACAACTTTTGGAAGGGAAGATATTGAACTTTGTTTTGATATGAGGCATTCTGGTCATGCATATATATCTAATTATATAATTAAGGATGTGTAGGCTTTTCATTTAGCTCTTGTTGTATTATTTGCCAGCTAACACTTAAAGCTTCTCCAGATAGACCTACTAAGTAAGACGACTTTTAGCTACTGTGTACAGCTCGTTTAATTCAAGACTCCAACTCAGAATGGAAGCCACCTCAGCAAGCTATTTACCCGTATGTTTTTCGGGTATGGGTTTCAGGTATTTGACATGCTGTGTTAGTTACCCGAGTCAATAAGTTTGTTGTAGAGGGTTTTATCGTGTGTTTTTGTATATACTCTATTCTTGTAGATTAATTTATAAAATCTAAGGATATAGTGGGTTTTGGGTAAGAGTGAGAGCTGATTTTAGCTGAGTGTCTACGAGAGACAATTCTTCTGTATGAGTGTGGTCTGAAAGCTGAGAAGGGGCTGGGGATCATCTTGTTATGAACGATTGTAATTTGTGATAGAGGAATCACATGTAAGCTAGGATTGCTTGTTGTAAAGAGGAAGATGATCGATATTGTAATGCTGTTGAATCTAGTGGGTAGCCTCAAATGGATGTAGATCAACTTTTTGGGATCGAACTACTATAAGTTTTATGTGCCTTAATCTCTCTTGCTCTATTTTTCATTGATTTATGTTCTGTGATTGTCGATTGAATTTGTATTGGTTGGGTCTGTTATTTGTTGAATGTGATTTGCATTGTTAGTTGGTAAATTGCGTTAACAATTGGTATCAGGGCTTGAAATTGGTTAAAACCTAGAAGTTGTTTCGATTATGGATGCTAAATTTGAGGTAGAACGCTTTGATGGTAAGGGTGATTTTTCATTGTGGAAAAAGAAAATGTGTGTCTTGCTTGTTCAATAAAAAGTAGCTGAAGTCCTAGATGAGTCTACTGAACTGACAACTGGTCTACCTGAGTCAAAAGTTAATGAAACTAAGGAGATAGTATTTAGCACCATAATACTGTATTTAGCAGACAATGTACTACGACAAGTACATGAAGCAAAAATGGTTAAAGAACTGTGGAAACAACTTGATACAATTTACCTAACGTACTCTTTAACAAATAAGCTTTATATTAAAGAAAGGTTCTTCTGCTTTAAAATGGACCCTTCTAAAGACCTAGAACATAACCTGGATGAGTTCAATCGAATTGTTTTAGACCTAGCAAGCATTGATAAAAAAAAATGTCTGATGAGAATTGAGCTATTATCCTGTTAAATTCACTTCCTGAATTCTACAATGAAGTAAAATCAACAATTAGATATGGAATAGACAGCCTTACTATGGATATAGTGCTTAGTGCTCTTCGGTCTAGAGATTTGGAACTTAAAAAGGGTAAAGGAAAGGTGAGTGAAGCTTTGTTTTCAAGAGGTACAACCAAAAAGAAAACTTCAAGGAATAATGGCAGAAGTAGGTCTAAATCACAAGGAAATAAAACTAAAATATGCTTTTATTGTCATGAAGAAGGCCGCATACGCAGAAACTGTTATGAACTAAAAAATAAAAGGAAAAATGAGTCAAAGAACGAAGATGAGCAACATAATGCAAACCTAACCGAGAACTATGAAACTGCTAAAGTCCTTACCATGTCTGAGGGAAATTTTGACTCTGAATGGTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTAAATGAAACAATTGGCCGAACATAAATAAAATATTATTTGATGTTTTTTCAATAAGGAGTTATTGTCTATATTATGTATATCTTGCCTAAATAACCCTAATCCAATAAACTAAACATCCTAGGCTGTGGGATGAATCTTGAACCGTATGTGGAGACATACGGGGACCACTGTTCAAGAGAAGGCCTGAAGGGTCTATAGTATAGGGGATAAGGCTAGGTACCTTATCCTGGTGACACTATGGATACGACCCACTTTGTATTTGATACAAATGCAATGATCCAACGCATTCGTGTAGGGGACATGCGAGTGGGGGTATCCTGTTGTTGCCTTCTAGAGTGGTTACAAATATAAGGAAAATTTACTCCAAAATACTATACTAGCATACACTATGCGCAACAAATGATAAGTAATTATTGCATCCACGATGTCTTGAATAGTCTCACTCTATTGATTTTAATTAGTTCTTAGTGTTTTCAAAGTTGGTTAAATTGATTGGGTTCTTAAAATGTCGGAACAAGAGAAATGATAAAAAAGGAATGTAAACGAATAAAAGAAACACAATGGAAGCAGGCACTTGTTAAGATTTATGTAATTGTTATAAAGATGATCTAGCAATTCCTTCGATCAGGAAATCTCTCGCAGTCTTATCAGCAGGATCCTATCGGAACTCTGGATTTTTTGGAATGTGTTTCAACTCGAATGAAGTTCTACCGATCGAGCGTTAGGTAGTCGGTTACCCCTAACTCAACTGCTAGCGTCCACCAACTATCAACAGTCTAACGTGATTACAAGCCACACAACTCTTAAATCATCCCTGAAACTAAGAGAAGCTATACATACGGCTGGCCAGGTAGGCACATAATAGAAATAAGCTTAACAAGTTATCAATATGCACAAGATCAACAAGAATCACTAGATTAATAAAGAATGACAATTAGATTGTTCTTAACCCATGCCTATAATAAATTAGTTCATAGAAATAAACATAACAAGTATTGCAATCTGAATAAGCACATCCATACTATAAATTCTACAAGAAAGTACTATCCTCCTTGAGAAAATCCACAGAATAGTCTTCTTGAGTCTCCAATTAGTTTTATCTCTAATCGGCCTCCAAAGGATGGAATCAATTGACTTCATACGACTACTCTCATTTATAAGGTGAGGCTTAACCTAATTAGGTCAAACATGCCACGTGGAGCTCTTCCCAAGTCTTCTAAATCTGAGATCTAAGCTGAAAACGCCACCTCATTTAATGAATTACGTGGAGCTCAAGTGGCCTGTTTTGCTAATATTTTGCTGGATCAACAGACTCTGCTCTCTCAAACTGGTCATCATTCATTTTCTGCTAAAGAAACCCAAAGCATCAATTCTTATAAATTAGGCTAAAACATAATATATTCATATAATAACCTCATCTAAATGGCACAATTAACATATAAATCAATAAATAATAGGGTATAAATAACTCCCTTTTTTAGAGTTATCACCTGTACAATGAGTTTGCATAAGATCGGACCGCGAAATAGTAACCACTAAATGTAACACCGTTAACTAGTTAGGTTTCTATTTCACTAGGATGACCTAGGCAACTTAGTCTTAATCCTGAGTGGATTATCCTTTGATTTGTATGGGTGAGAGTGGCCAGTACGTCGACTCAATAAGCCTATCATTTTGGGGACAAGACCGATTGGGGAGCTGGAAACATAATCACACAAGAAGGAATTCACTCCTTTCTGACTTCAGGGAAGTAGATGAGTGTTGCCTTAAGTGGTGTCTCCGGGTCTTGAACAAAGGGCCCTACCCTCTCACTAGCCTAAGAAGGGTTTCTGTTTGGTGGTTGGACCACAAACACGTTGTTCATTAGAGGAGCGCTGGTACTTAAAGAGGTAGAGGTAACCTAGGGGTAAAACAGTAATTTGACCCAGCTAGATTATGAACACTTGTGAAGGACTAACTTGCTGTCATTGGTCTATATCTGTGGACACAGAATTATGTCTATAGGGAGAAGAGTGCAACTGTGGGTCTTTAGTGGAGTATACCCATAGTTAACGAAAATTGATTAATTGGTTAATGAGTTTAGTCGATTAATCTCATATCGTTGGAACTTCTAATCTGCAGGTCCATTAGGTCCTACTAGTAGCTCGTAAAGAGATTTGAGGCAATTAAGTATTAATTGTAAATTGAAAGTGTTCAATTTACTTAGGGGAATAATATAATGTATGGTGATACATTATAATATAAAGTTTATGTGAAATTTTATAATATAATTTTGAATTAGTTTCAAAATTATTTTTGAGAGAAATAAATATCTGAAAGAGTTCAAATATTGAAATGAATTGGATTCATATTAATAAAATAATTTAATAGAAAGTCTAAAATTAAATATATGATATTGAATTGGGTAATTAATTAATTAATTAATTAATTATTTATTTATTTATTAAATTAATTATGAATAAAATACAATATTTTATTCATGGTTTTTTCCTATAAATAGGACCCCTAGGTTGGGGGTGAAGGCAGTCACTCATTCTCCTGCTCTCAGAGAATTCCCCTGAAGGCTTCCCAGACTCCCACTAATCTCTTGCCTCGAGAAGTCTCAAAGAAGTATCGATGTAGCCATAGTGGTAGTGTTTGCTAGACTTGGAGAAGAATTTCCAATGAAGATCAACGTTCGGGGTTGCTTTGTTTCGCGAGAAAAGAACCAAGGTGTTGGAGAATAACGGTCAAGTCGTCAAACGTTGGTTTGTTTCGTTTTCTCTTTGATCTAGAGATTTGCATGAATTAAATAGTTTTAATTCTGTAAATTCCAGCACGCTATAACCTTACTTTACAGCCGTTTATGTATGATAAACATTGTTCTTTTGCCATTCGAATTGGTTTTTTAATCTTGATTAAAATACAACGTTAGGTCCTCTGATTATCTTCCGCTACGCTAGGGATTTCAACCCTACAAATGGATCCTTGATTTTATTTGTTCCTTCCATATGACACCTAATAAGCATTGGCTCATGAGTTTTGAAGAAGTTGATGGTGGTAAAGTGTTGTTAGGGAATCATCAAGAGTGCAGTATTAAATGTATAGGAACAATCCAAGTTAAAATGTTTGATAACTAAGGGAGTTGTCAAATATGAGATATGTTCCAGACCTTAAACGTAATTTAATTTCCTTAGGAGTCTTTGACAAAGTTGGATACTTGTCCAAACTTGAAAATGGTACTATAAAAATTGTTAAAGGTGCCATTGTCAAAGCTAAGGGAATTTTACATAATGATCTCTATGTTCTAACTGGAAATACAGTGGTGGGCACTACTGCTATTGCTTCGGTTAGGGATCAAAATCAAACAAAATTGTGGCATGCCAGATTAGGACACATGAGTGAAAGAGGTCTGAGAGAGTTATCAAAACAAGGGTTGTTGGGTAAGTTTGTTGTATCATCCTTAGATGTGTGTAAGCATTGTGTTTATGGAAAGCCCACGAGAGTGTCTTTTAGTAAAGGGCAACATAATTCAAAGAAAATTCTTGATTATGTGCATGCTAATCTGTGGGGACTCGAAAAGACACCTACAATGGGAGGAGCTAGATATTTTTTTAGTATTGTGGATGACTTCTCTAGGAGAGTATGGACTTACCTGTTAAAATCTAAAGATGAGACTTTCAAAAAAAAACTTAGTGGAAAACTCTAGTTGAAAAGCAAACTGAAAGAAAGTGAAGTGTCTTAGAATTGATAACGGTTTAGAGTTTCTAAGCAATGAATTTAAAGAGTTCTGTAAAACAGAAGGGATATTGAGGCATTTAACTGTGCGTTGGACTCCACAATAGAATGGTTTGGCTGAACGTATGAATAGAACTCTTTTAGAAAAAGTAAGATGTTTGATGTCAAATGCTTGCTTACCTAAAACGTTTTGGGGTGGAGCTCTTATAACAACAACTTACTTGATAAACAGGAGTCCATCTACTGCAATTGACTCTAAAACTCCTATTGTAAAATGATCTAATCACCCACCTGATTTAAGCAACTTAAAAACCTTCGATTGCATAGCTTATGCACATAACAAAGAAGGAAAATTAGACCATAGAGCAAACAAATGCATGTTTTTAGGATATCCTATTGGTGTTAAAGGTTGTAAACTTTGGTTAATTGAAAAAGGTGAAGAAAAATGCATCATAAGTTGAGATGTAACCTTTGATGAGACTGTAATTGCTTGGGAAAAGAATCAAGATAGGGAAATTTCTAATATAGAAAATAAACAAACCTATGAAATGGAGCCGGAGTTCTCACCGAAAGCATCAGTCATTGGAATGAGGTTTCTGTACAAGAAAATGTGACTGATGAAGTAGTTGATGTTCAACCTGTAGATGTGTAGCCTGTGAGTACTTAGCCTGAAACAGATTCCTTACAAAATTACAGCCTAACCCATGATAGACGGAGGAGGGAAATCAGAAGACCAACTAGGATATGCAAGTGTTCATGTTGTTCATTATGCACTGTTGTTGCCTTCTAGAGTGGTTAAAAATGTGATATAAATTAGCTCCAAAACACTATGCAAGTGCACATAATCTGCAGCAAGTAATAAGTATTTTATCGTATCCACGAGGTCTTGAATAGTCTCACTTTACCTATATCTTTTTTTGGTCTTTTAGTGACTTCAAGGTTGATAAATTGATTGGGTTTTTTGGAAAAATGCTGGAACAAAAGAAATGATAAAGCATAAATGTAAACTGATAAAGAAGACAGATTGGAAAAGGCATTGGTTAAGACTTCTGTAATTGTTAAAAAGATGCTCCAGCAATTCTATTGATCAGACAATCTCTCACAGTCTTATTAGCAGGATCCTCTCGGAACTCTGGATTCTTTGGAATAGGTTTCAACTCCAATGAAGTTCTACCCATCAAGCATTAGGCAATTGGCTATCCCTAGCTCAATTGCTGGCGTTCACCAACTACAAAGATCTAATGTGATTACGAGCCACACAACTCTTAAATCATCCCTGAAACTAAGAGAAGATATCCATAACGACTAGCCAGGAGAGCACAAAATGAAATTAAGAACAACAAGTAATCAAGATGCTCAAAGTTCAGTAAGAATCGCTAGATTATAAAGAAATGACAATTACATTTTTCTCAACCAATGCCTAAAGTAATTTAGTTCATGGAAATATGAATAACACACGCTACAATCTGATTAAGCGCATCCATAACTACAAATGCTACAAGAAAGAATAGTCCTCGAAATTCGTAGAAAATGGTCTTCTAAGGTCTCCAATCAATTCTCCTCTATTTGGCCTCCAAAGATGGAATTAATTTTGAATCTATTTGACTTGAGACGACTACTCTCTTTTATAGAGTGAAGTCAACCCTAATTAGGTCAAATATGACACGTGGAACTCTCTCCAAGCTTCCTAAATCTGAGATCACTGCTGAAAACGCGACCTCATTAATGAATCACGTGCAGCTCACGTGGCCAGTTTTGCTCACAGCTTTGCTGGACCATGGATTTTGCTCCCTCAATACGATCAACATTAATTTCTCTGCAAAAGAACTTCCAAAGCATCAATTCTTATAATTAGGATAAACCGCATTATATTCATCTAATAACACACCCATTTGGCACATATAACATATAAATCATCATAGAATAAGACACAAATAACTCCCTTTTGGAGAGTTATCAACTGTGTACCGAAATGAACTCAGTAGATGAGGAACCACTTACCTATAATGAAGTTATTAATTCCAAAGACAATGATAAATGAAATGAAGCAATGCAAGAGGAAATGATTTTTCTACTGAAAAACAATAACTGGGAATTGGTTAAAAGACATTTGAACAAAAAAATTTGTTGGATTGTAAATGGATATTTAAGGTGAAGTATAGTGTTGATCCTTCACAACCAATAAGGTATAAGGCAAGGTTGGTTGCTAAGGGGTTTACCCAAAAGGAAGGAGTGGATTATGGAGAAATTTTCTCCCCGATTGTAAGACACTCTTCCATAAGAACCTTGTTGTCCCTTGTGATTGTTTTTGATCAATTAGATGTCAAGACAACCTTTTTACATGGTGAGCTGTCTGAAACTATTTATATGCAACAACCAATGGGACTTATATCTAAAGGAATCAAAAACCAAGTTTTCTTGCTTAAGAAATCCTTGTATGGGCTGAGAAAAGCTCCAAGACAATGGTACATTAAGTTTGATTCTTTCATGTTGTCCCGTGGTTTTACTAGAAGTAATCTTGTGAAGGGATTGAAATTCCGTAATTCCGTAAAGCGGAAGTGTAATTGGGACCAATTCGTAGTTAATTTTGTTTAATTTAAAATACCAATACATTGGCAATAAACTTAGAACTATTCTAGATATATATTAAGACTAAACATACAAAAATATTAGATCTAAATCTAATTTATATGATCCTATGTTTGCATGCAATCTTTATTATAGGTTGACGGTTTCTAATCTTTAATTTTATAACTCTTATAAATTTTAATGATTATCCCTATAATAAACTTTATATGGTTTAATTAATTAACAATCAAATTCAAATTAATCAATAAACCATAACATTTTTATTTCACGACTTAATATAACGTATATTAAACTATGGATGTGTCATTCTTAACGCAAATTGATTTTCATATTTTATTAATATAACTCCTTATATCATGCAAATCATGAAAATCACCAAGCATCCATAAGACATTAAATTAAATATAACTCTTTATATTTAAGCTATGTAATGTCATGTCACATGCTTATTGTGTTTCATATATTTAACATAACCATTATATTAAATTACTCATGAAATTCATCCATCATGCATTAATATCATACATTATAACATTTATAATATATTAAAATGCAAGATCATGCTAACCTAAGGTGAGATTTAATCTAAATGACATCCACAAAGCATTTAAATAGCAAATGAACCGATAATTTGGCCCCCTAGGATAAAATAAAGCAATGAATTACATTAATTTAGCATAATTTTATCCTAATAAGTCTCTTGCCGTTCCAGAACTGGATCAAAACGACTCGAACCAACCCGAACCATCTCGAACCGGCCTCCAAAAAACTCGAACCAAGCCATCCCAGCACGAAACAGAGCCAACCCTTTGAGTCGGATCGAACCGAACCGTTTACACCACTTGTAAACCCTAGTGCCGTCGCTGGAACTCGACGCAGCGTCGAGACGTCGTCTCGTTTCACGTGTTGCTGGGATTTTGAGATAGCGTTGAGACGCTGA

mRNA sequence

ATGGTCAAATTTCTCTTAGGAATTTGCCCCTCGCTCCACGTGACGATCAATAGTGAATTTGTAAGCTCTCCTAGGGTTTTCGCTGCTACTGATCTCCTAGCGCTCATCGGACCTTTGGCCCTGGTCGGCCTCGGCAGTGGGCCGAGGCTGACCTCATCCTCGGCCTCGACAATGGCCGAGGTCGAGCGTGGTCGTCGTGGGCCGGAAGGAGCTCCAGCCCTTCGCTTCGTCGGTTTGCCTTCTTTTGACTTTGGGCCTATTCAGTATAAGATAATGTTGAATAGTTTTGCCCATAACACAAGGGATGGAACTGTGGAAGGTCAACTTTTTTCTTGGGGACCAGGAAAGGCTCGTTTAATTCAAGACTCCAACTCAGAATGGAAGCCACCTCAGCAAGCTATTTACCCGTATGTTTTTCGGGTATGGGTTTCAGTAAAATCAACAATTAGATATGGAATAGACAGCCTTACTATGGATATAGTGCTTAGTGCTCTTCGGTCTAGAGATTTGGAACTTAAAAAGGGTAAAGGAAAGGTGAGTGAAGCTTTGTTTTCAAGAGGAAATCTCTCGCAGTCTTATCAGCAGGATCCTATCGGAACTCTGGATTTTTTGGAATGTGTTTCAACTCGAATGAAGTTCTACCGATCGAGCGTTAGGCTTCCCAGACTCCCACTAATCTCTTGCCTCGAGAAGTCTCAAAGAAGTATCGATGTAGCCATAGTGGTAGTGTTTGCTAGACTTGGAGAAGAATTTCCAATGAAGATCAACGTTCGGGGTTGCTTTGTTTCGCGAGAAAAGAACCAAGGAGTCTTTGACAAAGTTGGATACTTGTCCAAACTTGAAAATGGTACTATAAAAATTGTTAAAGGTGCCATTGTCAAAGCTAAGGGAATTTTACATAATGATCTCTATGTTCTAACTGGAAATACAGTGGTGGGCACTACTGCTATTGCTTCGGTTTCAACTCCAATGAAGTTCTACCCATCAAGCATTAGGCAATTGGCTATCCCTAGCTCAATTGCTGGCGTTCACCAACTACAAAGATCTAATGTGAAGTATAGTGTTGATCCTTCACAACCAATAAGGTATAAGGCAAGGTTGGTTGCTAAGGGGTTTACCCAAAAGGAAGGAGTGGATTATGGAGAAATTTTCTCCCCGATTGTAAGACACTCTTCCATAAGAACCTTGTTGTCCCTTGTGATTGTTTTTGATCAATTAGATGTCAAGACAACCTTTTTACATGGTGAGCTGTCTGAAACTATTTATATGCAACAACCAATGGGACTTATATCTAAAGGAATCAAAAACCAAGTTTTCTTGCTTAAGAAATCCTTGTATGGGCTGAGAAAAGCTCCAAGACAATGGTACATTAAGTTTGATTCTTTCATGTTGTCCCGTGGTTTTACTAGAAGTAATCTTGTGAAGGGATTGAAATTCCGTAATTCCGTAAAGCGGAAGTGTAATTGGGACCAATTCGTAAACTGGATCAAAACGACTCGAACCAACCCGAACCATCTCGAACCGGCCTCCAAAAAACTCGAACCAAGCCATCCCAGCACGAAACAGAGCCAACCCTTTGAGTCGGATCGAACCGAACCGTTTACACCACTTGTAAACCCTAGTGCCGTCGCTGGAACTCGACGCAGCGTCGAGACGTCGTCTCGTTTCACGTGTTGCTGGGATTTTGAGATAGCGTTGAGACGCTGA

Coding sequence (CDS)

ATGGTCAAATTTCTCTTAGGAATTTGCCCCTCGCTCCACGTGACGATCAATAGTGAATTTGTAAGCTCTCCTAGGGTTTTCGCTGCTACTGATCTCCTAGCGCTCATCGGACCTTTGGCCCTGGTCGGCCTCGGCAGTGGGCCGAGGCTGACCTCATCCTCGGCCTCGACAATGGCCGAGGTCGAGCGTGGTCGTCGTGGGCCGGAAGGAGCTCCAGCCCTTCGCTTCGTCGGTTTGCCTTCTTTTGACTTTGGGCCTATTCAGTATAAGATAATGTTGAATAGTTTTGCCCATAACACAAGGGATGGAACTGTGGAAGGTCAACTTTTTTCTTGGGGACCAGGAAAGGCTCGTTTAATTCAAGACTCCAACTCAGAATGGAAGCCACCTCAGCAAGCTATTTACCCGTATGTTTTTCGGGTATGGGTTTCAGTAAAATCAACAATTAGATATGGAATAGACAGCCTTACTATGGATATAGTGCTTAGTGCTCTTCGGTCTAGAGATTTGGAACTTAAAAAGGGTAAAGGAAAGGTGAGTGAAGCTTTGTTTTCAAGAGGAAATCTCTCGCAGTCTTATCAGCAGGATCCTATCGGAACTCTGGATTTTTTGGAATGTGTTTCAACTCGAATGAAGTTCTACCGATCGAGCGTTAGGCTTCCCAGACTCCCACTAATCTCTTGCCTCGAGAAGTCTCAAAGAAGTATCGATGTAGCCATAGTGGTAGTGTTTGCTAGACTTGGAGAAGAATTTCCAATGAAGATCAACGTTCGGGGTTGCTTTGTTTCGCGAGAAAAGAACCAAGGAGTCTTTGACAAAGTTGGATACTTGTCCAAACTTGAAAATGGTACTATAAAAATTGTTAAAGGTGCCATTGTCAAAGCTAAGGGAATTTTACATAATGATCTCTATGTTCTAACTGGAAATACAGTGGTGGGCACTACTGCTATTGCTTCGGTTTCAACTCCAATGAAGTTCTACCCATCAAGCATTAGGCAATTGGCTATCCCTAGCTCAATTGCTGGCGTTCACCAACTACAAAGATCTAATGTGAAGTATAGTGTTGATCCTTCACAACCAATAAGGTATAAGGCAAGGTTGGTTGCTAAGGGGTTTACCCAAAAGGAAGGAGTGGATTATGGAGAAATTTTCTCCCCGATTGTAAGACACTCTTCCATAAGAACCTTGTTGTCCCTTGTGATTGTTTTTGATCAATTAGATGTCAAGACAACCTTTTTACATGGTGAGCTGTCTGAAACTATTTATATGCAACAACCAATGGGACTTATATCTAAAGGAATCAAAAACCAAGTTTTCTTGCTTAAGAAATCCTTGTATGGGCTGAGAAAAGCTCCAAGACAATGGTACATTAAGTTTGATTCTTTCATGTTGTCCCGTGGTTTTACTAGAAGTAATCTTGTGAAGGGATTGAAATTCCGTAATTCCGTAAAGCGGAAGTGTAATTGGGACCAATTCGTAAACTGGATCAAAACGACTCGAACCAACCCGAACCATCTCGAACCGGCCTCCAAAAAACTCGAACCAAGCCATCCCAGCACGAAACAGAGCCAACCCTTTGAGTCGGATCGAACCGAACCGTTTACACCACTTGTAAACCCTAGTGCCGTCGCTGGAACTCGACGCAGCGTCGAGACGTCGTCTCGTTTCACGTGTTGCTGGGATTTTGAGATAGCGTTGAGACGCTGA

Protein sequence

MVKFLLGICPSLHVTINSEFVSSPRVFAATDLLALIGPLALVGLGSGPRLTSSSASTMAEVERGRRGPEGAPALRFVGLPSFDFGPIQYKIMLNSFAHNTRDGTVEGQLFSWGPGKARLIQDSNSEWKPPQQAIYPYVFRVWVSVKSTIRYGIDSLTMDIVLSALRSRDLELKKGKGKVSEALFSRGNLSQSYQQDPIGTLDFLECVSTRMKFYRSSVRLPRLPLISCLEKSQRSIDVAIVVVFARLGEEFPMKINVRGCFVSREKNQGVFDKVGYLSKLENGTIKIVKGAIVKAKGILHNDLYVLTGNTVVGTTAIASVSTPMKFYPSSIRQLAIPSSIAGVHQLQRSNVKYSVDPSQPIRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFDQLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWYIKFDSFMLSRGFTRSNLVKGLKFRNSVKRKCNWDQFVNWIKTTRTNPNHLEPASKKLEPSHPSTKQSQPFESDRTEPFTPLVNPSAVAGTRRSVETSSRFTCCWDFEIALRR

Homology

[Close]

BLAST of Lag0026240 vs. NCBI nr
Match: KAD7478277.1 (hypothetical protein E3N88_01413 [Mikania micrantha])

HSP 1 Score: 158.3 bits (399), Expect = 2.0e-34
Identity = 75/115 (65.22%), Postives = 95/115 (82.61%), Query Frame = 0


Query: 362 RYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGEL 421
           RYKARLVAKGFTQ+EG+DY EIFSP+V+H+SIR +L++  V D    QLDVKTTFLHG L
Sbjct: 266 RYKARLVAKGFTQREGIDYTEIFSPVVKHTSIRVMLAITAVKDLELEQLDVKTTFLHGVL 325

Query: 422 SETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWYIKFDSFMLSRGFTRSN 473
            E IYM+QP+G + KG +++V LLKKSLYGL+++PRQWY +FD +M+S GF RSN
Sbjct: 326 DEQIYMKQPLGFVKKGEESKVCLLKKSLYGLKQSPRQWYRRFDEYMISNGFIRSN 380

[Close]

BLAST of Lag0026240 vs. NCBI nr
Match: KAD4178669.1 (hypothetical protein E3N88_27260 [Mikania micrantha])

HSP 1 Score: 156.8 bits (395), Expect = 5.7e-34
Identity = 73/115 (63.48%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 362 RYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGEL 421
           RYKARLVAKGFTQ+EG+DY EIFSP+V+H+SIR +L++ +V+D    QLDVKT FLHG L
Sbjct: 441 RYKARLVAKGFTQREGIDYTEIFSPVVKHTSIRVMLAITVVYDLELEQLDVKTAFLHGVL 500

Query: 422 SETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWYIKFDSFMLSRGFTRSN 473
            E IYM+QP+G + +G +N+V LLKKSLYGL+++PRQWY +FD  M+  GF RSN
Sbjct: 501 DEQIYMKQPLGFVKEGEENKVCLLKKSLYGLKQSPRQWYRRFDECMIKSGFIRSN 555

[Close]

BLAST of Lag0026240 vs. NCBI nr
Match: KAA0067243.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa] >TYK10853.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 9.7e-34
Identity = 82/137 (59.85%), Postives = 104/137 (75.91%), Query Frame = 0


Query: 345 QLQRSNVKYSVDP-----SQPIRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSL 404
           +L +S   Y + P     S+P RYKARLVAKG+TQKEGVD+ EIFSP+VRHSSIR +LS+
Sbjct: 705 KLIQSKWIYKIKPGTGGNSKP-RYKARLVAKGYTQKEGVDFHEIFSPVVRHSSIRLILSI 764

Query: 405 VIVFD----QLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQW 464
           V+ FD    Q+DV TTFLHGEL E IYM QP G   KG ++ VF L KSLYGL+++PRQW
Sbjct: 765 VVHFDMFIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVFRLHKSLYGLKQSPRQW 824

Query: 465 YIKFDSFMLSRGFTRSN 473
           YI+FD+F+L +GF R++
Sbjct: 825 YIRFDTFILKQGFHRNS 840

[Close]

BLAST of Lag0026240 vs. NCBI nr
Match: AAT44257.1 (putative polyprotein [Oryza sativa Japonica Group])

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-33
Identity = 75/125 (60.00%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 352 KYSVDPSQPIRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLD 411
           K  + PS   RYKARLVAKG++Q  G+D+ ++FSP+++HSSIRTLLS+V V D    Q+D
Sbjct: 748 KKGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVLKHSSIRTLLSIVAVHDYELEQMD 807

Query: 412 VKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWYIKFDSFMLSRG 471
           VKT FLHGEL E IYM+QP G +  G +N V+ LKKSLYGL+++PRQWY +FDSFM S+ 
Sbjct: 808 VKTAFLHGELEEDIYMEQPEGFVVPGKENLVYRLKKSLYGLKQSPRQWYKRFDSFMFSQK 867

Query: 472 FTRSN 473
           F RSN
Sbjct: 868 FRRSN 872

[Close]

BLAST of Lag0026240 vs. NCBI nr
Match: CAJ86151.1 (H0413E07.4 [Oryza sativa])

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-33
Identity = 77/125 (61.60%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 352 KYSVDPSQPIRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLD 411
           K  + PS   RYKARLVAKG++Q  G+D+ +IFSP+V+HSSIRTLLS+V + D    Q+D
Sbjct: 795 KEGMSPSDEARYKARLVAKGYSQIPGIDFNDIFSPVVKHSSIRTLLSIVAMHDYELEQMD 854

Query: 412 VKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWYIKFDSFMLSRG 471
           VKT FLHGEL E IYM+QP G +  G +N V  LKKSLYGL+++PRQWY +FDSFMLS+ 
Sbjct: 855 VKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQK 914

Query: 472 FTRSN 473
           F RSN
Sbjct: 915 FRRSN 919

[Close]

BLAST of Lag0026240 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.2e-31
Identity = 69/115 (60.00%), Postives = 87/115 (75.65%), Query Frame = 0


Query: 361 IRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGE 420
           +RYKARLV KGF QK+G+D+ EIFSP+V+ +SIRT+LSL    D    QLDVKT FLHG+
Sbjct: 872 VRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGD 931

Query: 421 LSETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWYIKFDSFMLSRGFTRS 472
           L E IYM+QP G    G K+ V  L KSLYGL++APRQWY+KFDSFM S+ + ++
Sbjct: 932 LEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKT 986

[Close]

BLAST of Lag0026240 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.5e-24
Identity = 58/124 (46.77%), Postives = 82/124 (66.13%), Query Frame = 0


Query: 352  KYSVDPSQPIRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVI----VFDQLD 411
            KY+ D S   RYKARLVAKG+ Q+ G+DY E FSP+++ +SIR +L + +       QLD
Sbjct: 1007 KYNSDGSLN-RYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLD 1066

Query: 412  VKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWYIKFDSFMLSRG 471
            V   FL G L++ +YM QP G I K   N V  L+K+LYGL++APR WY++  +++L+ G
Sbjct: 1067 VNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIG 1126

[Close]

BLAST of Lag0026240 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 4.7e-23
Identity = 51/114 (44.74%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 362  RYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVI----VFDQLDVKTTFLHGEL 421
            RYKARLVAKG+ Q+ G+DY E FSP+++ +SIR +L + +       QLDV   FL G L
Sbjct: 999  RYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTL 1058

Query: 422  SETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWYIKFDSFMLSRGFTRS 472
            ++ +YM QP G + K   + V  L+K++YGL++APR WY++  +++L+ GF  S
Sbjct: 1059 TDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNS 1112

[Close]

BLAST of Lag0026240 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 105.1 bits (261), Expect = 2.6e-21
Identity = 59/128 (46.09%), Postives = 83/128 (64.84%), Query Frame = 0


Query: 350  NVKYSVDPSQPIRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----Q 409
            +VKY+ +   PIRYKARLVA+GFTQK  +DY E F+P+ R SS R +LSLVI ++    Q
Sbjct: 942  SVKYN-ELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQ 1001

Query: 410  LDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWYIKFDSFMLS 469
            +DVKT FL+G L E IYM+ P G+      + V  L K++YGL++A R W+  F+  +  
Sbjct: 1002 MDVKTAFLNGTLKEEIYMRLPQGISCN--SDNVCKLNKAIYGLKQAARCWFEVFEQALKE 1061

Query: 470  RGFTRSNL 474
              F  S++
Sbjct: 1062 CEFVNSSV 1066

[Close]

BLAST of Lag0026240 vs. ExPASy Swiss-Prot
Match: Q07163 (Transposon TyH3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae OX=4932 GN=TY1B PE=1 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 3.3e-08
Identity = 43/150 (28.67%), Postives = 74/150 (49.33%), Query Frame = 0


Query: 363  YKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVI----VFDQLDVKTTFLHGELS 422
            +KAR VA+G  Q        + S  V H ++ T LSL +       QLD+ + +L+ ++ 
Sbjct: 1298 HKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIK 1357

Query: 423  ETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWYIKFDSFMLSRGFTRSNLVKGLK 482
            E +Y++ P  L   G+ +++  LKKSLYGL+++   WY    S+++ +            
Sbjct: 1358 EELYIRPPPHL---GMNDKLIRLKKSLYGLKQSGANWYETIKSYLIQQCGMEEVRGWSCV 1417

Query: 483  FRNSVKRKCNW-DQFVNWIKTTRTNPNHLE 508
            F+NS    C + D  V + K   +N   +E
Sbjct: 1418 FKNSQVTICLFVDDMVLFSKNLNSNKRIIE 1444

[Close]

BLAST of Lag0026240 vs. ExPASy TrEMBL
Match: A0A5N6Q2D8 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_01413 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 9.5e-35
Identity = 75/115 (65.22%), Postives = 95/115 (82.61%), Query Frame = 0


Query: 362 RYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGEL 421
           RYKARLVAKGFTQ+EG+DY EIFSP+V+H+SIR +L++  V D    QLDVKTTFLHG L
Sbjct: 266 RYKARLVAKGFTQREGIDYTEIFSPVVKHTSIRVMLAITAVKDLELEQLDVKTTFLHGVL 325

Query: 422 SETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWYIKFDSFMLSRGFTRSN 473
            E IYM+QP+G + KG +++V LLKKSLYGL+++PRQWY +FD +M+S GF RSN
Sbjct: 326 DEQIYMKQPLGFVKKGEESKVCLLKKSLYGLKQSPRQWYRRFDEYMISNGFIRSN 380

[Close]

BLAST of Lag0026240 vs. ExPASy TrEMBL
Match: A0A5N6MW65 (Integrase catalytic domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_27260 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.8e-34
Identity = 73/115 (63.48%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 362 RYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGEL 421
           RYKARLVAKGFTQ+EG+DY EIFSP+V+H+SIR +L++ +V+D    QLDVKT FLHG L
Sbjct: 441 RYKARLVAKGFTQREGIDYTEIFSPVVKHTSIRVMLAITVVYDLELEQLDVKTAFLHGVL 500

Query: 422 SETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWYIKFDSFMLSRGFTRSN 473
            E IYM+QP+G + +G +N+V LLKKSLYGL+++PRQWY +FD  M+  GF RSN
Sbjct: 501 DEQIYMKQPLGFVKEGEENKVCLLKKSLYGLKQSPRQWYRRFDECMIKSGFIRSN 555

[Close]

BLAST of Lag0026240 vs. ExPASy TrEMBL
Match: A0A5A7VGM4 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00240 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.7e-34
Identity = 82/137 (59.85%), Postives = 104/137 (75.91%), Query Frame = 0


Query: 345 QLQRSNVKYSVDP-----SQPIRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSL 404
           +L +S   Y + P     S+P RYKARLVAKG+TQKEGVD+ EIFSP+VRHSSIR +LS+
Sbjct: 705 KLIQSKWIYKIKPGTGGNSKP-RYKARLVAKGYTQKEGVDFHEIFSPVVRHSSIRLILSI 764

Query: 405 VIVFD----QLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQW 464
           V+ FD    Q+DV TTFLHGEL E IYM QP G   KG ++ VF L KSLYGL+++PRQW
Sbjct: 765 VVHFDMFIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVFRLHKSLYGLKQSPRQW 824

Query: 465 YIKFDSFMLSRGFTRSN 473
           YI+FD+F+L +GF R++
Sbjct: 825 YIRFDTFILKQGFHRNS 840

[Close]

BLAST of Lag0026240 vs. ExPASy TrEMBL
Match: Q25A78 (H0413E07.4 protein OS=Oryza sativa OX=4530 GN=H0413E07.4 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 6.1e-34
Identity = 77/125 (61.60%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 352 KYSVDPSQPIRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLD 411
           K  + PS   RYKARLVAKG++Q  G+D+ +IFSP+V+HSSIRTLLS+V + D    Q+D
Sbjct: 795 KEGMSPSDEARYKARLVAKGYSQIPGIDFNDIFSPVVKHSSIRTLLSIVAMHDYELEQMD 854

Query: 412 VKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWYIKFDSFMLSRG 471
           VKT FLHGEL E IYM+QP G +  G +N V  LKKSLYGL+++PRQWY +FDSFMLS+ 
Sbjct: 855 VKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQK 914

Query: 472 FTRSN 473
           F RSN
Sbjct: 915 FRRSN 919

[Close]

BLAST of Lag0026240 vs. ExPASy TrEMBL
Match: Q25A71 (H0306F03.15 protein OS=Oryza sativa OX=4530 GN=H0306F03.15 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 6.1e-34
Identity = 77/125 (61.60%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 352 KYSVDPSQPIRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLD 411
           K  + PS   RYKARLVAKG++Q  G+D+ +IFSP+V+HSSIRTLLS+V + D    Q+D
Sbjct: 627 KEGMSPSDEARYKARLVAKGYSQIPGIDFNDIFSPVVKHSSIRTLLSIVAMHDYELEQMD 686

Query: 412 VKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWYIKFDSFMLSRG 471
           VKT FLHGEL E IYM+QP G +  G +N V  LKKSLYGL+++PRQWY +FDSFMLS+ 
Sbjct: 687 VKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQK 746

Query: 472 FTRSN 473
           F RSN
Sbjct: 747 FRRSN 751

[Close]

BLAST of Lag0026240 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 107.1 bits (266), Expect = 4.8e-23
Identity = 55/130 (42.31%), Postives = 88/130 (67.69%), Query Frame = 0


Query: 351 VKYSVDPSQPIRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QL 410
           +KY+ D +   RYKARLVAKG+TQ+EG+D+ E FSP+ + +S++ +L++  +++    QL
Sbjct: 135 IKYNSDGTIE-RYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQL 194

Query: 411 DVKTTFLHGELSETIYMQQPMGLISKG----IKNQVFLLKKSLYGLRKAPRQWYIKFDSF 470
           D+   FL+G+L E IYM+ P G  ++       N V  LKKS+YGL++A RQW++KF   
Sbjct: 195 DISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVT 254

Query: 471 MLSRGFTRSN 473
           ++  GF +S+
Sbjct: 255 LIGFGFVQSH 263

[Close]

BLAST of Lag0026240 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 50.1 bits (118), Expect = 7.0e-06
Identity = 26/47 (55.32%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 362 RYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFDQLDV 409
           R KARLVAKGF Q+EG+ + E +SP+VR ++IRT+L+   V  QL+V
Sbjct: 87  RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILN---VAQQLEV 130

The following BLAST results are available for this feature:

BLAST of Lag0026240 vs. NCBI nr


Match Name	E-value	Identity	Description
KAD7478277.1	2.0e-34	65.22	hypothetical protein E3N88_01413 [Mikania micrantha]	[more]
KAD4178669.1	5.7e-34	63.48	hypothetical protein E3N88_27260 [Mikania micrantha]	[more]
KAA0067243.1	9.7e-34	59.85	retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa...	[more]
AAT44257.1	1.3e-33	60.00	putative polyprotein [Oryza sativa Japonica Group]	[more]
CAJ86151.1	1.3e-33	61.60	H0413E07.4 [Oryza sativa]	[more]

BLAST of Lag0026240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.2e-31	60.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	2.5e-24	46.77	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	4.7e-23	44.74	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	2.6e-21	46.09	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q07163	3.3e-08	28.67	Transposon TyH3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae OX=4932 GN=TY1B ...	[more]

BLAST of Lag0026240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N6Q2D8	9.5e-35	65.22	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Mikania micran...	[more]
A0A5N6MW65	2.8e-34	63.48	Integrase catalytic domain-containing protein OS=Mikania micrantha OX=192012 GN=...	[more]
A0A5A7VGM4	4.7e-34	59.85	Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku...	[more]
Q25A78	6.1e-34	61.60	H0413E07.4 protein OS=Oryza sativa OX=4530 GN=H0413E07.4 PE=4 SV=1	[more]
Q25A71	6.1e-34	61.60	H0306F03.15 protein OS=Oryza sativa OX=4530 GN=H0306F03.15 PE=4 SV=1	[more]

BLAST of Lag0026240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	4.8e-23	42.31	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	7.0e-06	55.32	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 359..482 e-value: 2.1E-34 score: 119.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 503..540
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 515..530
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 360..472

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0026240.1	Lag0026240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0008270	zinc ion binding