Lag0026202 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0026202
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	PMD domain-containing protein
Location	chr10: 32179315 .. 32181289 (-)
RNA-Seq Expression	Lag0026202
Synteny	Lag0026202

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGGTCGCTGCTTGCAGAAACACGGCGGCGTCTTCGCGGCGACAACGGCGAAGGGGGGAGGAGAGTTAGAGAGAGAGACAAGAGAGACGGTTTGTGGTGTTGAGAGAGAGGAAAAAAATATGGAGAGGATGGTGAGAGAAAGAATGAGGGAAACGATTGAGTGAGAGAATGAATCGTTTTTTATTTATTTTTTAACTTCCTGCTTTTGCAATTAAATTTTTTTTATTAAATATTTTTTTATGTCCTTTTGTGAAATCATCTCCACTCCATGCCTCCCCCGTGTTTTAGTTTTAATTTTTTTTTCAATATATTTTTTTTAACTTTCTAACTTCTATCTTTTAACTTTTTTTTTTACACTTTCCGCCTCTTTCTTTTTTTAACTTTTGTTTTCTTTTAATTTGTATTTTTTTAGCTTTTCTTTTGTTTTTTATTTTATTTTTTTTGTTTTGTTGTTCTTTTTATTATTTTTTGTCATCTTCTTTTATTTGTTTTTTTTTTTTTTTAACTTTATGTGTTTCCTTTTTTTTCCATAATTTTTTTTATTTGAACTATTTTTGTGTCTTTTAATGAGAATGTGTGTACCCGTTTCTTTCTTCTTTTTTTTTTAGTTTTTTTTAATTTTCTTCTTTTTTTTGTCTAACCAATTTTTTTTTAACTTTCGGTTTCCCTTTTTAATTTTCCTTTTTTTCCACTTTCTAAAAAAATGTGTACCTTTTTTTTTTGTTTTTTTTTCTTTTAGCTTTCTAACTTTTTTTTCTTTTTTTAATTTGTATATTTTTTTACAATCCGTTTTTTTAGTTTTTATATATATATTTTTTAACTTTCTGAATCCTCTCTTTTTTAAAAAAAAATATTTTATATTATTAGTTTTTTTTTGTTGATTGATTTTTTTTATCTTTTAACTTTCCAACTATTTTTGGTTTTTTGTTTTTAAATATCTTTTAACTTCATTATTTTTTTTGTTTTTTGATTTTTTTTTATCTTTTAACTTTCCAACTTTTTTGTTTGTTTGTTTGTTTTTTTTTTGCTTGTTAATTACTCATTTCTTTCTTGATCTCAAGGAACAATCGAGTCCAATTGCTCTCATTGCACAACTGATATTTGTTTGCCAACTAGTGTTGAATTCCTTCACAGTAGCTTTCATCCACCATCCAGGTACTGAAAATCACATCTTGAAGTCGAAACCAAGCGAAAGTGAGGAATGACACTTATGAGGTAGGACTATGACCCTCAGTGTTGATTCTTTGCTTAGCTTCCAACCTTAAAATCGAAACCAGGTGAAAGTAGAGAAGGACACTTATGAGGTAGGACTATGACACCTCAGTGTTCATTCTCTTCTTAGCTTCCAACCTTAAAATCGAAACCAAACGAAAGTAGGGAATGACACTTATGAGGTAGGGCTATGACCCTCAGTGTTCATCCCCTACTTAGCTTCCAACGAATTTTATTTGCTTTGCTCATTTTTCTTTTCAACAACTGAACCCAACTTTTTTTATTTATTTTTTTTATTATTCTCATGATCATGGAATACTTCACTGAGCATATCTCCTCCGAGAAGAAATATCTTGTCTTCTCAAGGACAAAGATCAGCCTATTAAAAACGAGATTAATCTCTTGGTTGAGGAACCAAAGTCTGACCCTTTTTCAGACCTATGACCAAATTTAAATGATGTTGTATTTTTGCTCGAACTATCGACGAAAAAGGTTTTAAACCAAGAAGAACGAGTGTGGCTTTTACAATCCTCAATCCATCCTAAAGCTTACAACCAAAATCCAGAGTTGACTCTAGGACGTCGAATGATAGATGGGCAAGCCCGCTGGAATTCTGTGATGAAGGTTCCTAGAGACTTCTCATTCACTTCACTCTATTGGGAATGGTTGGAGTTGGTAGTTGGTCGTAGGGGTGTGCATCGGTCGGTCGGGATCGGTTTTTGGCCAAAACCGACGCTGAAAATCGACCATTCGGTTTGA

mRNA sequence

ATGTCGGGTCGCTGCTTGCAGAAACACGGCGGCGTCTTCGCGGCGACAACGGCGAAGGGGGGAGGAGAGTTAGAGAGAGAGACAAGAGAGACGGAACAATCGAGTCCAATTGCTCTCATTGCACAACTGATATTTGTTTGCCAACTAGTGTTGAATTCCTTCACAGTAGCTTTCATCCACCATCCAGCTTACAACCAAAATCCAGAGTTGACTCTAGGACGTCGAATGATAGATGGGCAAGCCCGCTGGAATTCTGTGATGAAGGTTCCTAGAGACTTCTCATTCACTTCACTCTATTGGGAATGGTTGGAGTTGGTAGTTGGTCGTAGGGGTGTGCATCGGTCGGTCGGGATCGGTTTTTGGCCAAAACCGACGCTGAAAATCGACCATTCGGTTTGA

Coding sequence (CDS)

ATGTCGGGTCGCTGCTTGCAGAAACACGGCGGCGTCTTCGCGGCGACAACGGCGAAGGGGGGAGGAGAGTTAGAGAGAGAGACAAGAGAGACGGAACAATCGAGTCCAATTGCTCTCATTGCACAACTGATATTTGTTTGCCAACTAGTGTTGAATTCCTTCACAGTAGCTTTCATCCACCATCCAGCTTACAACCAAAATCCAGAGTTGACTCTAGGACGTCGAATGATAGATGGGCAAGCCCGCTGGAATTCTGTGATGAAGGTTCCTAGAGACTTCTCATTCACTTCACTCTATTGGGAATGGTTGGAGTTGGTAGTTGGTCGTAGGGGTGTGCATCGGTCGGTCGGGATCGGTTTTTGGCCAAAACCGACGCTGAAAATCGACCATTCGGTTTGA

Protein sequence

MSGRCLQKHGGVFAATTAKGGGELERETRETEQSSPIALIAQLIFVCQLVLNSFTVAFIHHPAYNQNPELTLGRRMIDGQARWNSVMKVPRDFSFTSLYWEWLELVVGRRGVHRSVGIGFWPKPTLKIDHSV

Homology

[Close]

BLAST of Lag0026202 vs. NCBI nr
Match: KAA0065375.1 (hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 9.2e-12
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 59  IHHPAYNQNPELTLGRRMIDGQARWNSVMKVPRDFSFTSLYWEWLELVVGR 110
           IHH A N    LTLG+R+I+GQ RW +V KVPR+F FT  YWEWLELVVGR
Sbjct: 76  IHHEAPNSGRALTLGQRLIEGQTRWGTVTKVPREFCFTDCYWEWLELVVGR 126

[Close]

BLAST of Lag0026202 vs. NCBI nr
Match: KAA0042126.1 (hypothetical protein E6C27_scaffold67G006100 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 7.8e-11
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 59  IHHPAYNQNPELTLGRRMIDGQARWNSVMKVPRDFSFTSLYWEWLELVVGR 110
           IH+ A N    LTLG+R+I+GQ RW +V KVPR+F FT  YWEWLELVVGR
Sbjct: 99  IHNEAPNPGRALTLGQRLIEGQTRWGTVTKVPREFCFTDCYWEWLELVVGR 149

[Close]

BLAST of Lag0026202 vs. NCBI nr
Match: TYK18070.1 (hypothetical protein E5676_scaffold306G004010 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 7.8e-11
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 59  IHHPAYNQNPELTLGRRMIDGQARWNSVMKVPRDFSFTSLYWEWLELVVGR 110
           IH+ A N    LTLG+R+I+GQ RW +V KVPR+F FT  YWEWLELVVGR
Sbjct: 99  IHNEAPNPGRALTLGQRLIEGQTRWGTVTKVPREFCFTDCYWEWLELVVGR 149

[Close]

BLAST of Lag0026202 vs. NCBI nr
Match: TYK00336.1 (hypothetical protein E5676_scaffold1923G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-10
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 59  IHHPAYNQNPELTLGRRMIDGQARWNSVMKVPRDFSFTSLYWEWLELVVGR 110
           IH+ A+N +  LTLG+R+I+GQ RW  V KVP +F FT  YWEWLELVVGR
Sbjct: 92  IHNEAHNSSRALTLGQRLIEGQTRWGIVTKVPGEFCFTDCYWEWLELVVGR 142

[Close]

BLAST of Lag0026202 vs. NCBI nr
Match: KAA0034815.1 (hypothetical protein E6C27_scaffold213G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 3.0e-10
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 59  IHHPAYNQNPELTLGRRMIDGQARWNSVMKVPRDFSFTSLYWEWLELVVGR 110
           IH+ A N +  LTLG+R+I+GQ RW +V KVP +F FT  YWEWLELVVGR
Sbjct: 73  IHNEAPNSSRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWLELVVGR 123

The following BLAST results are available for this feature:

BLAST of Lag0026202 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065375.1	9.2e-12	66.67	hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa]	[more]
KAA0042126.1	7.8e-11	64.71	hypothetical protein E6C27_scaffold67G006100 [Cucumis melo var. makuwa]	[more]
TYK18070.1	7.8e-11	64.71	hypothetical protein E5676_scaffold306G004010 [Cucumis melo var. makuwa]	[more]
TYK00336.1	1.7e-10	62.75	hypothetical protein E5676_scaffold1923G00140 [Cucumis melo var. makuwa]	[more]
KAA0034815.1	3.0e-10	62.75	hypothetical protein E6C27_scaffold213G00490 [Cucumis melo var. makuwa]	[more]

BLAST of Lag0026202 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0026202.1	Lag0026202.1	mRNA