Lag0026176 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026176
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr10: 31500112 .. 31504025 (+)
RNA-Seq ExpressionLag0026176
SyntenyLag0026176
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCCTGGACTGCCAAGTCTACCTCACCCCATCTGGTTCGAGCCCATACACTTCATTTGAGACAGACTCACCTGGCCTAAGCCGAGGCCGACCCCAAACCTTAAAGGTATTCTTCTCTTTATTCAACTATGCTTTATGTTTTAGTGAAGCTTTACTTGAGATTGGGGGCTACATAGGGGATATGCACTCCCTATTAAACAAAAAGCACATTGGCTTAGCATGTTTTACTAAAAATTACATACTCTAGCCTATTCTCTCATTACTTCCCTACAAGGACTAACGTATGAATGCATGGAGCTAAATTTTGAGCTAACAGGGCATGAGACCGAGGTCGACCCTAGCCTATTCCCTCATTATTCTTTTGCGGAAGTTAACTTTCCGATGCAAGATTGTGAAATCTTCTATCTTTCCTATTCTTACTTGTGGAAAAGCCCTGGATCTGGAATGAAGCACTCTGAATGACCAAGTACGGGGGTCTCGCTGTGCAAAATTAGGAAAATGCTGTGCTCGGCCTCTTCCTGAGGCTGAGGCTGACCAGGGGCATTTTTGTAATCTCTCACCCTTCTCATTTCCATTTCACCTAACCCCTATTTAGGGAGTTTCTACTTTGTCTAGTTTATCCTATCTTGCAGGATAACAGTGACTCTGCACATAAGTCAGCACAGGGCAAAGATCATTACTCTTAAATCGGACTTAAGGAGCTCAACCTATAGCAATAAGTCACCCTGAATCCCAATTCAAGAGTGAGGCTTAATGTTATAGGTAATTTTGGACCACTCCGATGTACAAGGAGCTGACGAGGAAAACCAGGCAGAAATAGAGCTGGAAGATGGACCCCAGAGGCGAAACGAGCCAATAGGTCGGGCAAAGACCGAAGGGGTCAGACTTTCGACCCGACCCCTACTCGGCCTCGGCCATGGTCAAGGCCGAGCTCGATCGCCTTCGTTTGGTCTCTGTTGCCTCTGGCCGCCCCGACTCCCACTAGTTCATCTCGAAACGCCTTCGAATTTCTAAAAACCCTAGGAGCATGAGCATATATTTAAACCCCTCTTTGTCACTGAAGAAAGGGACCCGAACTCTATTCTCTGACCCTCCTCTTGCTCTTACTTTCCTGCTTCCCATCGTCCTTCTTGCTGACTTAAGCATCGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCAGTTTACTGTCTTGTAGGCCACACCTTCCCTCCTCACAAACAAATTTATCGTTGGTGGCACGTGAAGGCCAGGTGAGTTCCTCCGACCAAATTTGACCATCAACAGACAGTATTTGTCAATTACCATTTGGCAATACTCACTTTGACATTTAATTATTTAGTTATGGATTGGTAGAATTAATTTTTTTTATATTTATTATTGGATTAAAATTTGTTGTGAGATTTATTGTTTATTACATTTAATTTGTGAAATTAATGTTATTTTGTTTGATTAATTACTTTTTTTAGAAAATTTTCTTATTAATTAAATGATGAAAATAAAACTGCTTTAAAAAAATATATTGATGAAAATAAAATTCAAATGATTTGCTTGATATTCAAATATTTCAAATCAAATTTAGCAGACTTTGTTGTGTTTGCTTAGTCAATTTATGTATTGAATTTTGAAATTATTTTGAATATCTTGAATTTATTTTAAGGTGATATTCTTATTTATTTAATGGTTAAAAATCACTTTTGGTCCCTAAACTTTCACAAAAGTAACAGTTTGGTCCCTAAACTTGAATTTATAACGATTTAGTATCTGTACTTTCAATTTGGTAACAATTTGGTCCCTGAACTTTAATAAGTAACAATTTAGTTCCTATACTTTCAAATTTGTAACAATTTAGTCCCTATACTTTAAAATTTGTAACAATTTAATTCTTGTCACAAAAAAAAATCATCAAAATAAAATATCGATTTTTATTATTTAATGATTAAACTTTGTAGCTTATTAACTTATTGGGTCCCAAATTAGTTTATTAATCTATTCGGGTAAGAAATTTCATTAAATCTTTACATTAATTTTTCACGACAGGGACTAAATCGTTACAAAATTTAAAGTACATGGACTAAATTGTTACTTATTAAAGTTCAGGGACTAAATTGTTACAAATTGAAAGTAGAAGGACTAAATCGTTATAAAATTGAAAGTATAGGGACTAAATTGTTACAAATCAAAGTTCAGACATTAAATTGTTACTTTCATGAAAGTTTAGGGACGAAAAGTGAATTTTAACCTTATTTAATTTTGATATTATTTTGAATATCTTGAATTTATTTTAAGGTGATATTCAAGCAATGAAAAACGAGCAAAAGGAAGATGAAATGGAATTCAAACATGGGGTTCAAAGGTTAAGAAAATGAAAATAAATGACGGGGTCAGGAAGCGCAAATGCCTCCCGTTGGCATACAATATTTCAAACCAATTAGAAATTGCACGTCATTATTTTTAATGACAACGTATTTTTATTTAATTTTGGGGTGTGTCACAAATTAACACATATATCAAAATTAATTATGGCAAAATAAGAAAGGTCAGTGTCCTCTTTGTGGTCGTCTAATTTCATGGGATTCGATGGTTAAACTCAAGATCGAATGATCATTTAGCCTAAAATTCAATTTAGCCTTAGTTCATGAAGTTAAATTAAAATGTGTTAAGTTCATAAAGTTAGGTTAAATTGTGTTCAATTTAAATTCAAGATAGTTAAGGTAATTGGGTTTGAAGCCCAAAATTCATCCAAGCCCATGGATGGGGCCAAGCCCATGAAGGCCTTCTAAAAACCTATAAATAGGGAGGCTTGGCCTTCATGAAAGGGGACGGAAAGAAAAATGAGAGAATGAAGATTGAAGCTCTCTATAAGACTTAATGGAGATTGAAGCTCTCTATAAGACTCAGAAGATTGAAGCTCTAATCCTCTAACAAGACTCTGAAGGTAAAAGCCTCTGCAAGACTCTGAAGATTGAAGCTCTAATCCTCTTGCAAGACTCATAAGATTGAAGCTCTTTACAAGACTCTAAAGATTGAAGCTCTAATCCTCTTGCAAGACTCTGAATATTGAATCATCTACAAGACTCTGAAGACTGAATCTCAGATATTTCTGCAACACTGAAGATCGAAGCCCAGATCCTCCTACAAACTTGAAAATTGAAGTGAAGTCCTTCTAAAGATTAGAAGACTGAAGGCCTGAAGCCATAAGTCTACTTCAATCCATCCAGGAAAATTCAAATCCTTCAAAGACGAACAAACCTTCAAGACTCTGAAGATTAAAGCTTCTTGAAGACTGTATAGATCAAAGCTACCTTGAGTTTGTGAGAGAAAACATCAAAGGATTGTAAATAGAGATTGTATTCCACTATACTTACACAAGAATTAATACATACTAGAAGTCGTATCACGAATCACATTTCTCTCCTGAAATCTCGTGTGAACAGTTTGACACGCCTAGTGAGACCTCTCTACCTTTCATCTCATTCTATCATCCAGATCTATGGAAAAAAAGGTCTAAAGAAGCGATGGCAACCAAGAAAGTTACTTCCAAGACTTCAAGCAACTCTTATGTGGGACAATTTACTCGCGGATGCTCTAAGGAAATCTAGAAATCAAAAGAAGAACAAGCCTCTGTCATTGCAAATATGATATGGACCCAAATGGTAGAGCCAAACCAATGCGGGTTGTCTTGCAGGAAATTCCTTTATTTGAGGATTCTTCTTCATCTTCTGAAAAGGCAAAAGAGACATCAGATCCTGACATGATGTCTGTAATGATGGCGGACATAGGTACAAACGAAGAAAGAATGACTAAACTGGAAAGGATGGTCAACATGCGGATGAAGGTGGTTGAAAAGAGAGATTATGAAATTGCATCTCTAAAGAATTACATAGAAAGTCTGTTGGGTTTTATGTTCTAA

mRNA sequence

ATGAGCCTGGACTGCCAAGTCTACCTCACCCCATCTGGTTCGAGCCCATACACTTCATTTGAGACAGACTCACCTGGCCTAAGCCGAGGCCGACCCCAAACCTTAAAGGTAATTTTGGACCACTCCGATGTACAAGGAGCTGACGAGGAAAACCAGGCAGAAATAGAGCTGGAAGATGGACCCCAGAGGCGAAACGAGCCAATAGGTCGGGCAAAGACCGAAGGGGTCAGACTTTCGACCCGACCCCTACTCGGCCTCGGCCATGGTCAAGGCCGAGCTCGATCGCCTTCGTTTGGGACCCGAACTCTATTCTCTGACCCTCCTCTTGCTCTTACTTTCCTGCTTCCCATCGTCCTTCTTGCTGACTTAAGCATCGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCAGTTTACTGTCTTGTAGGCCACACCTTCCCTCCTCACAAACAAATTTATCGTTGGTGGCACGTGAAGGCCAGGAAATTCCTTTATTTGAGGATTCTTCTTCATCTTCTGAAAAGGCAAAAGAGACATCAGATCCTGACATGATGTCTGTAATGATGGCGGACATAGGTACAAACGAAGAAAGAATGACTAAACTGGAAAGGATGGTCAACATGCGGATGAAGGTGGTTGAAAAGAGAGATTATGAAATTGCATCTCTAAAGAATTACATAGAAAGTCTGTTGGGTTTTATGTTCTAA

Coding sequence (CDS)

ATGAGCCTGGACTGCCAAGTCTACCTCACCCCATCTGGTTCGAGCCCATACACTTCATTTGAGACAGACTCACCTGGCCTAAGCCGAGGCCGACCCCAAACCTTAAAGGTAATTTTGGACCACTCCGATGTACAAGGAGCTGACGAGGAAAACCAGGCAGAAATAGAGCTGGAAGATGGACCCCAGAGGCGAAACGAGCCAATAGGTCGGGCAAAGACCGAAGGGGTCAGACTTTCGACCCGACCCCTACTCGGCCTCGGCCATGGTCAAGGCCGAGCTCGATCGCCTTCGTTTGGGACCCGAACTCTATTCTCTGACCCTCCTCTTGCTCTTACTTTCCTGCTTCCCATCGTCCTTCTTGCTGACTTAAGCATCGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCAGTTTACTGTCTTGTAGGCCACACCTTCCCTCCTCACAAACAAATTTATCGTTGGTGGCACGTGAAGGCCAGGAAATTCCTTTATTTGAGGATTCTTCTTCATCTTCTGAAAAGGCAAAAGAGACATCAGATCCTGACATGATGTCTGTAATGATGGCGGACATAGGTACAAACGAAGAAAGAATGACTAAACTGGAAAGGATGGTCAACATGCGGATGAAGGTGGTTGAAAAGAGAGATTATGAAATTGCATCTCTAAAGAATTACATAGAAAGTCTGTTGGGTTTTATGTTCTAA

Protein sequence

MSLDCQVYLTPSGSSPYTSFETDSPGLSRGRPQTLKVILDHSDVQGADEENQAEIELEDGPQRRNEPIGRAKTEGVRLSTRPLLGLGHGQGRARSPSFGTRTLFSDPPLALTFLLPIVLLADLSIGGGVASTTPVCSLLSCRPHLPSSQTNLSLVAREGQEIPLFEDSSSSSEKAKETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYEIASLKNYIESLLGFMF
Homology
BLAST of Lag0026176 vs. NCBI nr
Match: KAA0039052.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-09
Identity = 38/70 (54.29%), Postives = 57/70 (81.43%), Query Frame = 0

Query: 160 QEIPLFEDSSSSSEKA-KETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYE 219
           +E P+ ++ +SSSE++ +ET  P++MSV+  D+ T++ RMT+LE+ +NM MK VE+RDYE
Sbjct: 26  KENPVIDEHNSSSERSNEETPHPNIMSVIATDVDTSDNRMTELEKKINMLMKAVEERDYE 85

Query: 220 IASLKNYIES 229
           IASLKN+IES
Sbjct: 86  IASLKNHIES 95

BLAST of Lag0026176 vs. NCBI nr
Match: KAA0050708.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK01442.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 1.7e-08
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 0

Query: 166 EDSSSSSEKAKETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYEIASLKNY 225
           E  SS      ET  P++MSVM+ ++ T+E+RMTKLE+ +NM +KVVE+RDYEIASLKN+
Sbjct: 26  ETQSSEEMSPLETPHPNIMSVMVTEVDTSEDRMTKLEKKINMLIKVVEERDYEIASLKNH 85

Query: 226 IES 229
           IES
Sbjct: 86  IES 88

BLAST of Lag0026176 vs. NCBI nr
Match: KAA0041883.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK05406.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-08
Identity = 39/70 (55.71%), Postives = 54/70 (77.14%), Query Frame = 0

Query: 160 QEIPLFEDSSSSSE-KAKETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYE 219
           +E P  ++  S SE  ++E + P++MSVM+ D+ T+E RM +LE+ VNM MKVVE+RDYE
Sbjct: 57  KENPAIDEHYSFSEHSSEEMAHPNIMSVMVTDVDTSENRMVELEKKVNMLMKVVEERDYE 116

Query: 220 IASLKNYIES 229
           IASLKN+IES
Sbjct: 117 IASLKNHIES 126

BLAST of Lag0026176 vs. NCBI nr
Match: KAA0051994.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04565.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 2.9e-08
Identity = 37/70 (52.86%), Postives = 55/70 (78.57%), Query Frame = 0

Query: 160 QEIPLFEDSSSSSEKA-KETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYE 219
           +E P  ++ +S SE++ +E   P++MSVM+ D+ T+E+RM +LE+ VNM MK VE+RD+E
Sbjct: 57  KENPAIDEHNSLSERSNEEAPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFE 116

Query: 220 IASLKNYIES 229
           IASLKN+IES
Sbjct: 117 IASLKNHIES 126

BLAST of Lag0026176 vs. NCBI nr
Match: KAA0043179.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK12286.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 2.9e-08
Identity = 38/70 (54.29%), Postives = 54/70 (77.14%), Query Frame = 0

Query: 160 QEIPLFEDSSSSSE-KAKETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYE 219
           +EIP  ++ +SS E   +E   P++MSVM+ D+ T+E+RM KLE+ VNM +K VE+RD+E
Sbjct: 57  KEIPAIDEHNSSFECSNEEVPHPNIMSVMVIDVDTSEDRMAKLEKKVNMLIKAVEERDFE 116

Query: 220 IASLKNYIES 229
           IASLKN+IES
Sbjct: 117 IASLKNHIES 126

BLAST of Lag0026176 vs. ExPASy TrEMBL
Match: A0A5A7T6D4 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G001460 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 38/70 (54.29%), Postives = 57/70 (81.43%), Query Frame = 0

Query: 160 QEIPLFEDSSSSSEKA-KETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYE 219
           +E P+ ++ +SSSE++ +ET  P++MSV+  D+ T++ RMT+LE+ +NM MK VE+RDYE
Sbjct: 26  KENPVIDEHNSSSERSNEETPHPNIMSVIATDVDTSDNRMTELEKKINMLMKAVEERDYE 85

Query: 220 IASLKNYIES 229
           IASLKN+IES
Sbjct: 86  IASLKNHIES 95

BLAST of Lag0026176 vs. ExPASy TrEMBL
Match: A0A5A7U601 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold772G00290 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.2e-09
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 0

Query: 166 EDSSSSSEKAKETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYEIASLKNY 225
           E  SS      ET  P++MSVM+ ++ T+E+RMTKLE+ +NM +KVVE+RDYEIASLKN+
Sbjct: 26  ETQSSEEMSPLETPHPNIMSVMVTEVDTSEDRMTKLEKKINMLIKVVEERDYEIASLKNH 85

Query: 226 IES 229
           IES
Sbjct: 86  IES 88

BLAST of Lag0026176 vs. ExPASy TrEMBL
Match: A0A5D3C4W1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G00920 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 39/70 (55.71%), Postives = 54/70 (77.14%), Query Frame = 0

Query: 160 QEIPLFEDSSSSSE-KAKETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYE 219
           +E P  ++  S SE  ++E + P++MSVM+ D+ T+E RM +LE+ VNM MKVVE+RDYE
Sbjct: 57  KENPAIDEHYSFSEHSSEEMAHPNIMSVMVTDVDTSENRMVELEKKVNMLMKVVEERDYE 116

Query: 220 IASLKNYIES 229
           IASLKN+IES
Sbjct: 117 IASLKNHIES 126

BLAST of Lag0026176 vs. ExPASy TrEMBL
Match: A0A5A7U9H0 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001980 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-08
Identity = 37/70 (52.86%), Postives = 55/70 (78.57%), Query Frame = 0

Query: 160 QEIPLFEDSSSSSEKA-KETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYE 219
           +E P  ++ +S SE++ +E   P++MSVM+ D+ T+E+RM +LE+ VNM MK VE+RD+E
Sbjct: 57  KENPAIDEHNSLSERSNEEAPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFE 116

Query: 220 IASLKNYIES 229
           IASLKN+IES
Sbjct: 117 IASLKNHIES 126

BLAST of Lag0026176 vs. ExPASy TrEMBL
Match: A0A5D3CPF1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00500 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-08
Identity = 38/70 (54.29%), Postives = 54/70 (77.14%), Query Frame = 0

Query: 160 QEIPLFEDSSSSSE-KAKETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYE 219
           +EIP  ++ +SS E   +E   P++MSVM+ D+ T+E+RM KLE+ VNM +K VE+RD+E
Sbjct: 57  KEIPAIDEHNSSFECSNEEVPHPNIMSVMVIDVDTSEDRMAKLEKKVNMLIKAVEERDFE 116

Query: 220 IASLKNYIES 229
           IASLKN+IES
Sbjct: 117 IASLKNHIES 126

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0039052.12.6e-0954.29ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0050708.11.7e-0858.73ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK01442.1 ty3-gyp... [more]
KAA0041883.12.2e-0855.71ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK05406.1 ty3-gyp... [more]
KAA0051994.12.9e-0852.86ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04565.1 ty3-gyp... [more]
KAA0043179.12.9e-0854.29ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK12286.1 ty3-gyp... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T6D41.3e-0954.29Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7U6018.2e-0958.73Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3C4W11.1e-0855.71Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7U9H01.4e-0852.86Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3CPF11.4e-0854.29Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..75

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026176.1Lag0026176.1mRNA