Lag0026167 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026167
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionSNF1-related protein kinase regulatory subunit beta-2-like isoform X1
Locationchr10: 31237895 .. 31238357 (-)
RNA-Seq ExpressionLag0026167
SyntenyLag0026167
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGTTTGTGCTTATAAAGACTCTTCATGTCGGTATCTATCACTACCACTTCATAGTTGATGGTTGGTTGGTTTATGCTCCAGATCTACCTTGGTTTTGTGATGATTCAGGGAATGCATTCAATATTTTAGACTTGCAGGTAAATTTCATGGCTTCCCATTGAGAATTTTGTATTCCTTAAGAATGCTATACTGCTGCTCCACATAATTCTCATTGAACTATGATTTCCAGGGCCATGTTTCTGAATTGCCTGAAAGTATGTCCGAGTTTGAAGCTCCTCCATCCCCGCCGTCGAGTTATGACAATCAATACTCGAACGAAGATGATTTCAACATACCTCCACTAGAACTACCTCCACATCTGCAAGGAACTATTTTGAACGATCCATCTTCTTCAATCGATGGTCGACAGTTGCATGTTACGCCTCGTAGTACAAAATTAAATCATCTGTATCTATAG

mRNA sequence

ATGAGAAATCTACCTTGGTTTTGTGATGATTCAGGGAATGCATTCAATATTTTAGACTTGCAGGGCCATGTTTCTGAATTGCCTGAAAGTATGTCCGAGTTTGAAGCTCCTCCATCCCCGCCGTCGAGTTATGACAATCAATACTCGAACGAAGATGATTTCAACATACCTCCACTAGAACTACCTCCACATCTGCAAGGAACTATTTTGAACGATCCATCTTCTTCAATCGATGGTCGACAGTTGCATGTTACGCCTCGTAGTACAAAATTAAATCATCTGTATCTATAG

Coding sequence (CDS)

ATGAGAAATCTACCTTGGTTTTGTGATGATTCAGGGAATGCATTCAATATTTTAGACTTGCAGGGCCATGTTTCTGAATTGCCTGAAAGTATGTCCGAGTTTGAAGCTCCTCCATCCCCGCCGTCGAGTTATGACAATCAATACTCGAACGAAGATGATTTCAACATACCTCCACTAGAACTACCTCCACATCTGCAAGGAACTATTTTGAACGATCCATCTTCTTCAATCGATGGTCGACAGTTGCATGTTACGCCTCGTAGTACAAAATTAAATCATCTGTATCTATAG

Protein sequence

MRNLPWFCDDSGNAFNILDLQGHVSELPESMSEFEAPPSPPSSYDNQYSNEDDFNIPPLELPPHLQGTILNDPSSSIDGRQLHVTPRSTKLNHLYL
Homology
BLAST of Lag0026167 vs. NCBI nr
Match: XP_022952313.1 (SNF1-related protein kinase regulatory subunit beta-2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 175.6 bits (444), Expect = 2.0e-40
Identity = 81/94 (86.17%), Postives = 87/94 (92.55%), Query Frame = 0

Query: 3   NLPWFCDDSGNAFNILDLQGHVSELPESMSEFEAPPSPPSSYDNQYSNEDDFNIPPLELP 62
           +LPWF DDSGNA+NILDLQGH+SELPESMSEFE PPSPPSSYDNQY NEDDFN PP ELP
Sbjct: 141 DLPWFRDDSGNAYNILDLQGHISELPESMSEFETPPSPPSSYDNQYINEDDFNRPPPELP 200

Query: 63  PHLQGTILNDPSSSIDGRQLHVTPRSTKLNHLYL 97
           PHLQGTILNDPSSS+DGR L +TPRST+LNHLYL
Sbjct: 201 PHLQGTILNDPSSSVDGRPLPITPRSTELNHLYL 234

BLAST of Lag0026167 vs. NCBI nr
Match: XP_022952312.1 (SNF1-related protein kinase regulatory subunit beta-2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 175.6 bits (444), Expect = 2.0e-40
Identity = 81/94 (86.17%), Postives = 87/94 (92.55%), Query Frame = 0

Query: 3   NLPWFCDDSGNAFNILDLQGHVSELPESMSEFEAPPSPPSSYDNQYSNEDDFNIPPLELP 62
           +LPWF DDSGNA+NILDLQGH+SELPESMSEFE PPSPPSSYDNQY NEDDFN PP ELP
Sbjct: 164 DLPWFRDDSGNAYNILDLQGHISELPESMSEFETPPSPPSSYDNQYINEDDFNRPPPELP 223

Query: 63  PHLQGTILNDPSSSIDGRQLHVTPRSTKLNHLYL 97
           PHLQGTILNDPSSS+DGR L +TPRST+LNHLYL
Sbjct: 224 PHLQGTILNDPSSSVDGRPLPITPRSTELNHLYL 257

BLAST of Lag0026167 vs. NCBI nr
Match: XP_023554562.1 (SNF1-related protein kinase regulatory subunit beta-2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 173.7 bits (439), Expect = 7.6e-40
Identity = 80/94 (85.11%), Postives = 87/94 (92.55%), Query Frame = 0

Query: 3   NLPWFCDDSGNAFNILDLQGHVSELPESMSEFEAPPSPPSSYDNQYSNEDDFNIPPLELP 62
           +LPWF DDSGNA+NILDLQGH+SELPESMSEFE PPSPPSSYDNQY NEDDF+ PP ELP
Sbjct: 164 DLPWFRDDSGNAYNILDLQGHISELPESMSEFETPPSPPSSYDNQYINEDDFSRPPPELP 223

Query: 63  PHLQGTILNDPSSSIDGRQLHVTPRSTKLNHLYL 97
           PHLQGTILNDPSSS+DGR L +TPRST+LNHLYL
Sbjct: 224 PHLQGTILNDPSSSVDGRPLPITPRSTELNHLYL 257

BLAST of Lag0026167 vs. NCBI nr
Match: XP_023554563.1 (SNF1-related protein kinase regulatory subunit beta-2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 173.7 bits (439), Expect = 7.6e-40
Identity = 80/94 (85.11%), Postives = 87/94 (92.55%), Query Frame = 0

Query: 3   NLPWFCDDSGNAFNILDLQGHVSELPESMSEFEAPPSPPSSYDNQYSNEDDFNIPPLELP 62
           +LPWF DDSGNA+NILDLQGH+SELPESMSEFE PPSPPSSYDNQY NEDDF+ PP ELP
Sbjct: 141 DLPWFRDDSGNAYNILDLQGHISELPESMSEFETPPSPPSSYDNQYINEDDFSRPPPELP 200

Query: 63  PHLQGTILNDPSSSIDGRQLHVTPRSTKLNHLYL 97
           PHLQGTILNDPSSS+DGR L +TPRST+LNHLYL
Sbjct: 201 PHLQGTILNDPSSSVDGRPLPITPRSTELNHLYL 234

BLAST of Lag0026167 vs. NCBI nr
Match: KAG6572220.1 (SNF1-related protein kinase regulatory subunit beta-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 173.7 bits (439), Expect = 7.6e-40
Identity = 80/94 (85.11%), Postives = 87/94 (92.55%), Query Frame = 0

Query: 3   NLPWFCDDSGNAFNILDLQGHVSELPESMSEFEAPPSPPSSYDNQYSNEDDFNIPPLELP 62
           +LPWF DDSGNA+NILDLQGH+SELPESMSEFE PPSPPSSYDNQY NEDDF+ PP ELP
Sbjct: 164 DLPWFRDDSGNAYNILDLQGHISELPESMSEFETPPSPPSSYDNQYINEDDFSRPPPELP 223

Query: 63  PHLQGTILNDPSSSIDGRQLHVTPRSTKLNHLYL 97
           PHLQGTILNDPSSS+DGR L +TPRST+LNHLYL
Sbjct: 224 PHLQGTILNDPSSSVDGRPLPITPRSTELNHLYL 257

BLAST of Lag0026167 vs. ExPASy Swiss-Prot
Match: Q9SCY5 (SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana OX=3702 GN=KINB2 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.0e-14
Identity = 43/93 (46.24%), Postives = 58/93 (62.37%), Query Frame = 0

Query: 4   LPWFCDDSGNAFNILDLQGHVSELPESMSEFEAPPSPPSSYDNQYSNEDDFNIPPLELPP 63
           LP   DD+GN FNILDLQ +V E  +S+S FE P SP +SY N     +D++  P  +PP
Sbjct: 164 LPLARDDAGNTFNILDLQDYVPEDIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPP 223

Query: 64  HLQGTILNDPSSSIDGRQLHVTPRSTKLNHLYL 97
           HLQ T+LN P+++ D       P+   LNHLY+
Sbjct: 224 HLQMTLLNLPAANPDIPSPLPRPQHVILNHLYM 256

BLAST of Lag0026167 vs. ExPASy Swiss-Prot
Match: Q84VQ1 (SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana OX=3702 GN=KINB1 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.9e-11
Identity = 36/94 (38.30%), Postives = 52/94 (55.32%), Query Frame = 0

Query: 3   NLPWFCDDSGNAFNILDLQGHVSELPESMSEFEAPPSPPSSYDNQYSNEDDFNIPPLELP 62
           +LP+  D+ GN  NILD+   V E PES+ EFEAPPSP  SY       +D+   PL +P
Sbjct: 161 DLPFVADEVGNVCNILDVHNFVPENPESIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVP 220

Query: 63  PHLQGTILNDPSSSIDGRQLHVTPRSTKLNHLYL 97
           P L  T+L     + +   +   P+   LNH+++
Sbjct: 221 PQLHLTLL----GTTEETAIATKPQHVVLNHVFI 250

BLAST of Lag0026167 vs. ExPASy Swiss-Prot
Match: Q9ZUU8 (SNF1-related protein kinase regulatory subunit beta-3 OS=Arabidopsis thaliana OX=3702 GN=KINB3 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 9.8e-06
Identity = 27/63 (42.86%), Postives = 38/63 (60.32%), Query Frame = 0

Query: 34 FEAPPSPPSSYDNQYSNEDDFNIPPLELPPHLQGTILNDPSSSIDGRQLHVTPRSTKLNH 93
          FE P SP SSY+N YS+ +D    P  +PPHLQ ++L +  S     +L   P++  LNH
Sbjct: 17 FEVPVSPVSSYNNVYSSTEDETRDPPAVPPHLQHSLLGNQGS----MELAYAPQNVVLNH 75

Query: 94 LYL 97
          LY+
Sbjct: 77 LYI 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022952313.12.0e-4086.17SNF1-related protein kinase regulatory subunit beta-2-like isoform X2 [Cucurbita... [more]
XP_022952312.12.0e-4086.17SNF1-related protein kinase regulatory subunit beta-2-like isoform X1 [Cucurbita... [more]
XP_023554562.17.6e-4085.11SNF1-related protein kinase regulatory subunit beta-2-like isoform X1 [Cucurbita... [more]
XP_023554563.17.6e-4085.11SNF1-related protein kinase regulatory subunit beta-2-like isoform X2 [Cucurbita... [more]
KAG6572220.17.6e-4085.11SNF1-related protein kinase regulatory subunit beta-2, partial [Cucurbita argyro... [more]
Match NameE-valueIdentityDescription
Q9SCY52.0e-1446.24SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana OX... [more]
Q84VQ15.9e-1138.30SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana OX... [more]
Q9ZUU89.8e-0642.86SNF1-related protein kinase regulatory subunit beta-3 OS=Arabidopsis thaliana OX... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D6.20.250.60coord: 29..96
e-value: 4.0E-10
score: 41.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..53
NoneNo IPR availablePANTHERPTHR46316:SF6SNF1-RELATED KINASE REGULATORY SUBUNIT BETA-2coord: 3..95
IPR043554SNF1-related protein kinase regulatory subunit betaPANTHERPTHR46316SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1coord: 3..95
IPR037256ASC domain superfamilySUPERFAMILY160219AMPKBI-likecoord: 24..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026167.1Lag0026167.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm