Lag0026153 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026153
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGlutamate receptor
Locationchr10: 30925687 .. 30926353 (+)
RNA-Seq ExpressionLag0026153
SyntenyLag0026153
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTGTTTTCTTCCATGCACGCCATGGCCACTTTATTTCTGTTAGAACTCAGGTTCACAATGTCATTTTGGAAGAATTACCCAAAGGATGAAACGTTGTCGTTTGGTATATCTGTCTACCAGAGTTTGTTATTTGTTTATTCTTTGGTGTATATACGTGTCCATTTATCAGAGGTAGAGAATCTTTATTGTTAGGTTTCTTTCTCTATTTATTCATCCCTGTATTGATGTAATAATTAGGTTGAGGAAATATAATCTTCTGAGAATTTCTCTCTTTCTGGTGTTTTCTTTGTTTTTGTAACTTGGTATCAGAGCACCAGCGATCACCATGACCAGTGGTGGGTCTTCTTCCTCTTCTTCCGCATCTGCGTCTTCTTCTGCAACAATTTCAGCTTCTGTCTCTACTGCTGCAACTGTGGTGAGTTCTTCCTTTGGCCATCCGTTGAGTACTGTTCTCACTGTGAAGCTCGACGAGAATAATTATTTGCTTGGGAGAGGAATGGTTCTAGCTATTCTTCGAGGTCAGAAGGTCGATGGCTATATTCTTGGGACTAAAGCCCAGCCATCAAAGTTTATCGAGGTTTCAACTGAAGCCGGGAAAATGTTAGAGCCGAATCCACTCTATGAAGAATGGACGACAGTGAATCAAACGTTGTCTGGCTAG

mRNA sequence

ATGGTGGTGTTTTCTTCCATGCACGCCATGGCCACTTTATTTCTGTTAGAACTCAGAGCACCAGCGATCACCATGACCAGTGGTGGGTCTTCTTCCTCTTCTTCCGCATCTGCGTCTTCTTCTGCAACAATTTCAGCTTCTGTCTCTACTGCTGCAACTGTGGTGAGTTCTTCCTTTGGCCATCCGTTGAGTACTGTTCTCACTGTGAAGCTCGACGAGAATAATTATTTGCTTGGGAGAGGAATGGTTCTAGCTATTCTTCGAGGTCAGAAGGTCGATGGCTATATTCTTGGGACTAAAGCCCAGCCATCAAAGTTTATCGAGGTTTCAACTGAAGCCGGGAAAATGTTAGAGCCGAATCCACTCTATGAAGAATGGACGACAGTGAATCAAACGTTGTCTGGCTAG

Coding sequence (CDS)

ATGGTGGTGTTTTCTTCCATGCACGCCATGGCCACTTTATTTCTGTTAGAACTCAGAGCACCAGCGATCACCATGACCAGTGGTGGGTCTTCTTCCTCTTCTTCCGCATCTGCGTCTTCTTCTGCAACAATTTCAGCTTCTGTCTCTACTGCTGCAACTGTGGTGAGTTCTTCCTTTGGCCATCCGTTGAGTACTGTTCTCACTGTGAAGCTCGACGAGAATAATTATTTGCTTGGGAGAGGAATGGTTCTAGCTATTCTTCGAGGTCAGAAGGTCGATGGCTATATTCTTGGGACTAAAGCCCAGCCATCAAAGTTTATCGAGGTTTCAACTGAAGCCGGGAAAATGTTAGAGCCGAATCCACTCTATGAAGAATGGACGACAGTGAATCAAACGTTGTCTGGCTAG

Protein sequence

MVVFSSMHAMATLFLLELRAPAITMTSGGSSSSSSASASSSATISASVSTAATVVSSSFGHPLSTVLTVKLDENNYLLGRGMVLAILRGQKVDGYILGTKAQPSKFIEVSTEAGKMLEPNPLYEEWTTVNQTLSG
Homology
[Close]
BLAST of Lag0026153 vs. NCBI nr
Match: XP_022143579.1 (ankyrin repeat-containing protein NPR4-like [Momordica charantia])

HSP 1 Score: 98.6 bits (244), Expect = 4.4e-17
Identity = 54/99 (54.55%), Postives = 70/99 (70.71%), Query Frame = 0 

Query: 39  SSSATISASVSTAATVVSSSFGHPLSTVLTVKLDENNYLLGRGMVLAILRGQKVDGYILG 98
           S S T ++  +T  + ++ SFGHPLST LTVKLD+ NY L +GMVLA+L GQKVDGY+L 
Sbjct: 7   SGSTTNNSQQATVFSAINISFGHPLSTALTVKLDDKNYTLWKGMVLAVLPGQKVDGYVLR 66

Query: 99  TKAQPSKFIEVSTEAGKMLEP--NPLYEEWTTVNQTLSG 136
           TK  PSK+   +++ G MLEP  NP YEEW+ V+Q   G
Sbjct: 67  TKTCPSKYTTTTSDTG-MLEPTLNPAYEEWSAVDQAFCG 104

[Close]
BLAST of Lag0026153 vs. NCBI nr
Match: XP_022157748.1 (uncharacterized protein LOC111024384 isoform X1 [Momordica charantia])

HSP 1 Score: 83.2 bits (204), Expect = 1.9e-12
Identity = 52/108 (48.15%), Postives = 67/108 (62.04%), Query Frame = 0 

Query: 31  SSSSSASASSSATISASVSTAATVVSSSFGHPLSTVLTVKLDENNYLLGRGMVLAILRGQ 90
           + +SS        ++      +   ++SFGHPL TVLTVKLD+ NY L RGMVLA+LRGQ
Sbjct: 6   TENSSVPPQVVTNVAVPTPNPSPQFNTSFGHPLGTVLTVKLDDKNYSLWRGMVLAVLRGQ 65

Query: 91  KVDGYILGTKAQPSKFIEVSTE---AGKMLEPNPLYEEWTTVNQTLSG 136
           K DGY+LGT A+P +F+ VS E       L+ NP Y EW  V+Q L G
Sbjct: 66  KFDGYVLGTLAKPPQFL-VSPETEGTSDHLQVNPEYVEWQAVDQALLG 112

[Close]
BLAST of Lag0026153 vs. NCBI nr
Match: XP_022157750.1 (uncharacterized protein LOC111024384 isoform X2 [Momordica charantia])

HSP 1 Score: 83.2 bits (204), Expect = 1.9e-12
Identity = 52/108 (48.15%), Postives = 67/108 (62.04%), Query Frame = 0 

Query: 31  SSSSSASASSSATISASVSTAATVVSSSFGHPLSTVLTVKLDENNYLLGRGMVLAILRGQ 90
           + +SS        ++      +   ++SFGHPL TVLTVKLD+ NY L RGMVLA+LRGQ
Sbjct: 6   TENSSVPPQVVTNVAVPTPNPSPQFNTSFGHPLGTVLTVKLDDKNYSLWRGMVLAVLRGQ 65

Query: 91  KVDGYILGTKAQPSKFIEVSTE---AGKMLEPNPLYEEWTTVNQTLSG 136
           K DGY+LGT A+P +F+ VS E       L+ NP Y EW  V+Q L G
Sbjct: 66  KFDGYVLGTLAKPPQFL-VSPETEGTSDHLQVNPEYVEWQAVDQALLG 112

[Close]
BLAST of Lag0026153 vs. NCBI nr
Match: KAA0047903.1 (retrotransposon polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 3.0e-10
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 0 

Query: 52  ATVVSSSFGHPLSTVLTVKLDENNYLLGRGMVLAILRGQKVDGYILGTKAQPSKFIEVST 111
           A   S++FGH LS+VL VKLDE NY L   MV+++L  QK+DG++LGTK +PSK I  + 
Sbjct: 21  ANASSTTFGHLLSSVLIVKLDEINYSLWHNMVMSVLNSQKIDGFVLGTKLKPSKVIFYAD 80

Query: 112 EAG-KMLEPNPLYEEWTTVN 131
           E G  M   N  +EEW  V+
Sbjct: 81  EPGSSMFNLNLKFEEWVVVD 100

[Close]
BLAST of Lag0026153 vs. NCBI nr
Match: KGN65642.1 (hypothetical protein Csa_019906 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 4.0e-10
Identity = 36/69 (52.17%), Postives = 53/69 (76.81%), Query Frame = 0 

Query: 45  SASVSTAATVVSSSFGHPLSTVLTVKLDENNYLLGRGMVLAILRGQKVDGYILGTKAQPS 104
           S +++   T +++SFGHPL T L++KLD+  + L RGMVLA+LRGQKVDGY+LG K+QP 
Sbjct: 19  SVTIAPTYTAINTSFGHPLDTSLSIKLDDKKFGLWRGMVLAVLRGQKVDGYVLGAKSQPP 78

Query: 105 KFIEVSTEA 114
           + ++ + EA
Sbjct: 79  QSLKSNDEA 87

The following BLAST results are available for this feature:
BLAST of Lag0026153 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022143579.14.4e-1754.55ankyrin repeat-containing protein NPR4-like [Momordica charantia][more]
XP_022157748.11.9e-1248.15uncharacterized protein LOC111024384 isoform X1 [Momordica charantia][more]
XP_022157750.11.9e-1248.15uncharacterized protein LOC111024384 isoform X2 [Momordica charantia][more]
KAA0047903.13.0e-1050.00retrotransposon polyprotein [Cucumis melo var. makuwa][more]
KGN65642.14.0e-1052.17hypothetical protein Csa_019906 [Cucumis sativus][more]
BLAST of Lag0026153 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026153.1Lag0026153.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane