Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCGATGGCTGAAAATAAATGATTTTGCGTCGTTATCGGAGCTGGAATTGATTGCAGTCACAAGCTGGTCAATTTGGAGCGACAGAAACAAGAAGGTTCATGGTCAGAGTATTCTGCCAATTAATACGAAAAACAGCTGGATAAATAATTATCAAAGGATTTTTTTGGATGCAAACTCAAGAAGAGCTGAAAATTTACCTTTGAGAAGAAATCTCGAGTCGGAATTGCATTGTTGGATTCCCCCTTCTGGAAACATGTGGAAGGTTAACGTTGATGCAGCTTGGACTTCGTCTCCTCCGTCAACGGGGTTGGGGGCAATTATCAGAGTTTCCATGGGCAACATAGTTGGAGCTTCGACTTTCTCAGTAAAAATCGACTACAAAGCCCCCATAGCAGAAGTGATGACAATCTTCGAAGGAGTATCGCTTGCTAAGTTTTTAGGATGTAAGGAGATTATCGTGGAATCTGATTGCTCTCAGGCAATTAATTTGGTTGCAAAGAAAACTGAAGTTTGGGGTGAGGTGGAACCTTGGTTGGAGGCCATCTGGGATCAACTTACTTTTTTCTCAAATGTCATTTTTGTATATACTTCCAGAAAGAAAAATGGGGTGGCTGATGGTATAACTAAGAGGGCTAAGAATGCTTAA
mRNA sequence
ATGGATCGATGGCTGAAAATAAATGATTTTGCGTCGTTATCGGAGCTGGAATTGATTGCAGTCACAAGCTGGTCAATTTGGAGCGACAGAAACAAGAAGGTTCATGGTCAGAGTATTCTGCCAATTAATACGAAAAACAGCTGGATAAATAATTATCAAAGGATTTTTTTGGATGCAAACTCAAGAAGAGCTGAAAATTTACCTTTGAGAAGAAATCTCGAGTCGGAATTGCATTGTTGGATTCCCCCTTCTGGAAACATGTGGAAGGTTAACGTTGATGCAGCTTGGACTTCGTCTCCTCCGTCAACGGGGTTGGGGGCAATTATCAGAGTTTCCATGGGCAACATAGTTGGAGCTTCGACTTTCTCAGTAAAAATCGACTACAAAGCCCCCATAGCAGAAGTGATGACAATCTTCGAAGGAGTATCGCTTGCTAAGTTTTTAGGATGTAAGGAGATTATCGTGGAATCTGATTGCTCTCAGGCAATTAATTTGGTTGCAAAGAAAACTGAAGTTTGGGGTGAGGTGGAACCTTGGTTGGAGGCCATCTGGGATCAACTTACTTTTTTCTCAAATGTCATTTTTGTATATACTTCCAGAAAGAAAAATGGGGTGGCTGATGGTATAACTAAGAGGGCTAAGAATGCTTAA
Coding sequence (CDS)
ATGGATCGATGGCTGAAAATAAATGATTTTGCGTCGTTATCGGAGCTGGAATTGATTGCAGTCACAAGCTGGTCAATTTGGAGCGACAGAAACAAGAAGGTTCATGGTCAGAGTATTCTGCCAATTAATACGAAAAACAGCTGGATAAATAATTATCAAAGGATTTTTTTGGATGCAAACTCAAGAAGAGCTGAAAATTTACCTTTGAGAAGAAATCTCGAGTCGGAATTGCATTGTTGGATTCCCCCTTCTGGAAACATGTGGAAGGTTAACGTTGATGCAGCTTGGACTTCGTCTCCTCCGTCAACGGGGTTGGGGGCAATTATCAGAGTTTCCATGGGCAACATAGTTGGAGCTTCGACTTTCTCAGTAAAAATCGACTACAAAGCCCCCATAGCAGAAGTGATGACAATCTTCGAAGGAGTATCGCTTGCTAAGTTTTTAGGATGTAAGGAGATTATCGTGGAATCTGATTGCTCTCAGGCAATTAATTTGGTTGCAAAGAAAACTGAAGTTTGGGGTGAGGTGGAACCTTGGTTGGAGGCCATCTGGGATCAACTTACTTTTTTCTCAAATGTCATTTTTGTATATACTTCCAGAAAGAAAAATGGGGTGGCTGATGGTATAACTAAGAGGGCTAAGAATGCTTAA
Protein sequence
MDRWLKINDFASLSELELIAVTSWSIWSDRNKKVHGQSILPINTKNSWINNYQRIFLDANSRRAENLPLRRNLESELHCWIPPSGNMWKVNVDAAWTSSPPSTGLGAIIRVSMGNIVGASTFSVKIDYKAPIAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVEPWLEAIWDQLTFFSNVIFVYTSRKKNGVADGITKRAKNA
Homology
BLAST of Lag0026139 vs. NCBI nr
Match:
XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])
HSP 1 Score: 103.2 bits (256), Expect = 2.8e-18
Identity = 65/214 (30.37%), Postives = 103/214 (48.13%), Query Frame = 0
Query: 1 MDRWLKINDFASLSELELIAVTSWSIWSDRNKKVHGQSILPINTKNSWINNYQRIFLDAN 60
++ W + + +L L A+T W IW+DRN +HG+ + P+ K W+ FLD++
Sbjct: 1216 LELWSSLTEQLEPKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTP----FLDSH 1275
Query: 61 SR-RAENLPLR--RNLESELHCWIPPSGNMWKVNVDAAWTSSPPSTGLGAIIRVSMGNIV 120
S+ + N R N + W P S K+N DAA + ST G IIR S ++V
Sbjct: 1276 SQAQMSNYSPRTQSNHRPVVQYWRPSSSVSLKLNTDAACRGA--STSFGCIIRDSSCSLV 1335
Query: 121 GASTFSVKIDYKAPIAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVE 180
A++ V +AE+ I EG+ A + VESD AI L+ + G+ +
Sbjct: 1336 AATSIRVPFPLSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQ 1395
Query: 181 PWLEAIWDQLTFFSNVIFVYTSRKKNGVADGITK 212
W+ I F+ + F ++SR+ N A G+ K
Sbjct: 1396 NWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAK 1423
BLAST of Lag0026139 vs. NCBI nr
Match:
XP_024950112.1 (uncharacterized protein LOC112496847 [Citrus sinensis])
HSP 1 Score: 97.4 bits (241), Expect = 1.6e-16
Identity = 64/204 (31.37%), Postives = 102/204 (50.00%), Query Frame = 0
Query: 14 SELELIAVTSWSIWSDRNKKV-HGQSILPINT---KNSWINNYQRIFLDANSRRAENLPL 73
S+LEL+ WS W RNK + G+ + PI + S + +QR+ R+ + +
Sbjct: 1170 SDLELMVALCWSAWYARNKCIFDGRELNPIISAAKAESVLTAFQRV------RKPQQSHI 1229
Query: 74 RRNLESELHCWIPPSGNMWKVNVDAAWTSSPPSTGLGAIIRVSMGNIVGASTFSVKIDYK 133
+++ + W+PP N++KVNVDAA+ S S G+GA+IR S G IV A +
Sbjct: 1230 SISIKEKQQEWLPPPQNVFKVNVDAAFNSKNLSAGVGAVIRDSNGKIVAAGVNQNLLKGS 1289
Query: 134 APIAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVEPWLEAIWDQLTF 193
A +AE + G+ LA+ +I+ESDC + + LV E+ + AI +Q+
Sbjct: 1290 ASLAEAEAVLWGLQLARNADVSSLIIESDCLEVVQLVNNTKGSRSEIFWTILAIQNQMKI 1349
Query: 194 FSNVIFVYTSRKKNGVADGITKRA 214
F V+ + R N A + K A
Sbjct: 1350 FQKVVVNHIPRHCNACAHYLAKIA 1367
BLAST of Lag0026139 vs. NCBI nr
Match:
XP_022158489.1 (uncharacterized protein LOC111024968 [Momordica charantia])
HSP 1 Score: 97.4 bits (241), Expect = 1.6e-16
Identity = 63/200 (31.50%), Postives = 103/200 (51.50%), Query Frame = 0
Query: 12 SLSELELIAVTSWSIWSDRNKKVHGQSILPINTKNSWINNY-QRIFLDANSRRAENLPLR 71
S SEL L +T W++W+DR+ ++ + I K WI Y + + + ++ +P
Sbjct: 5 STSELRLTGITCWALWNDRDALINKKKIPEALIKVEWILKYAEEVRMKYHNGMKRRIP-- 64
Query: 72 RNLESELHCWIPPSGNMWKVNVDAAWTSSPPSTGLGAIIRVSMGNIVGASTFSVKIDY-- 131
++ W PP G + K+N DAA S +G+G ++R IVGA +D+
Sbjct: 65 -----RVNEWRPPLGGVVKMNTDAA--VSEEGSGVGVLLREGNAEIVGA-----MVDFHM 124
Query: 132 -KAP-IAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVEPWLEAIWDQ 191
K P +A+++ I EG+SLA LG ++VE+D +A+NL+ K+ GE W+E I
Sbjct: 125 VKTPLLAKILAIREGLSLATRLGVHRVVVETDSLEALNLIGDKSPWKGEAVSWVEDIRAF 184
Query: 192 LTFFSNVIFVYTSRKKNGVA 207
F + F + R+ N VA
Sbjct: 185 ARDFQEICFQHVFRESNAVA 190
BLAST of Lag0026139 vs. NCBI nr
Match:
XP_022131661.1 (uncharacterized protein LOC111004786 [Momordica charantia])
HSP 1 Score: 97.1 bits (240), Expect = 2.0e-16
Identity = 57/166 (34.34%), Postives = 87/166 (52.41%), Query Frame = 0
Query: 1 MDRWLKINDFASLSELELIAVTSWSIWSDRNKKVHGQSILPINTKNSWINNYQRIFLDAN 60
MD WL + D + + +L A T W+IW DRN HG S+ + +WI++Y + + A
Sbjct: 37 MDIWLLLYDKLNPQQRDLAAFTXWAIWCDRNSXAHGSSVSTPALRCNWISSYFQNYSQAQ 96
Query: 61 SRRAENLPLRRNLESELHCWIPPSGNMWKVNVDAAWTSSPPSTGLGAIIRVSMGNIVGAS 120
+ + P + ++ W+PP + KVN DAA S+ STGLG IIR G ++ A
Sbjct: 97 ENKRIS-PQQSSVPPPSCRWLPPRDSAMKVNSDAACRST--STGLGLIIRDHFGVLLVAK 156
Query: 121 TFSVKIDYKAPIAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLV 167
+ + + AE+ I E + LA ++VESDC +AI LV
Sbjct: 157 SMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLV 199
BLAST of Lag0026139 vs. NCBI nr
Match:
XP_038902513.1 (uncharacterized protein LOC120089172 [Benincasa hispida])
HSP 1 Score: 95.5 bits (236), Expect = 5.9e-16
Identity = 52/135 (38.52%), Postives = 72/135 (53.33%), Query Frame = 0
Query: 80 WIPPSGNMWKVNVDAAWTSSPPSTGLGAIIRVSMGNIVGASTFSVKIDYKAPIAEVMTIF 139
W P + K+NVDAAW SP S+G AIIR + G++ S+ Y P+AE +
Sbjct: 56 WSTPPTSFIKLNVDAAWKFSPYSSGFSAIIRDNQGSLKVVQISSIDAVYPPPLAEAFVVL 115
Query: 140 EGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVEPWLEAIWDQLTFFSNVIFVYTS 199
+G+ L + K+IIV+SDCS AI+L K V WLE IW+ F + F Y
Sbjct: 116 QGLRLTSKMNFKKIIVKSDCSGAIDLFLKILISDSSVRVWLEEIWEISIVFYPINFAYIP 175
Query: 200 RKKNGVADGITKRAK 215
R N +AD + KR +
Sbjct: 176 RNINKLADIVAKRTR 190
BLAST of Lag0026139 vs. ExPASy TrEMBL
Match:
A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)
HSP 1 Score: 103.2 bits (256), Expect = 1.4e-18
Identity = 65/214 (30.37%), Postives = 103/214 (48.13%), Query Frame = 0
Query: 1 MDRWLKINDFASLSELELIAVTSWSIWSDRNKKVHGQSILPINTKNSWINNYQRIFLDAN 60
++ W + + +L L A+T W IW+DRN +HG+ + P+ K W+ FLD++
Sbjct: 1216 LELWSSLTEQLEPKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTP----FLDSH 1275
Query: 61 SR-RAENLPLR--RNLESELHCWIPPSGNMWKVNVDAAWTSSPPSTGLGAIIRVSMGNIV 120
S+ + N R N + W P S K+N DAA + ST G IIR S ++V
Sbjct: 1276 SQAQMSNYSPRTQSNHRPVVQYWRPSSSVSLKLNTDAACRGA--STSFGCIIRDSSCSLV 1335
Query: 121 GASTFSVKIDYKAPIAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVE 180
A++ V +AE+ I EG+ A + VESD AI L+ + G+ +
Sbjct: 1336 AATSIRVPFPLSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQ 1395
Query: 181 PWLEAIWDQLTFFSNVIFVYTSRKKNGVADGITK 212
W+ I F+ + F ++SR+ N A G+ K
Sbjct: 1396 NWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAK 1423
BLAST of Lag0026139 vs. ExPASy TrEMBL
Match:
A0A6J1DZK3 (uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024968 PE=4 SV=1)
HSP 1 Score: 97.4 bits (241), Expect = 7.6e-17
Identity = 63/200 (31.50%), Postives = 103/200 (51.50%), Query Frame = 0
Query: 12 SLSELELIAVTSWSIWSDRNKKVHGQSILPINTKNSWINNY-QRIFLDANSRRAENLPLR 71
S SEL L +T W++W+DR+ ++ + I K WI Y + + + ++ +P
Sbjct: 5 STSELRLTGITCWALWNDRDALINKKKIPEALIKVEWILKYAEEVRMKYHNGMKRRIP-- 64
Query: 72 RNLESELHCWIPPSGNMWKVNVDAAWTSSPPSTGLGAIIRVSMGNIVGASTFSVKIDY-- 131
++ W PP G + K+N DAA S +G+G ++R IVGA +D+
Sbjct: 65 -----RVNEWRPPLGGVVKMNTDAA--VSEEGSGVGVLLREGNAEIVGA-----MVDFHM 124
Query: 132 -KAP-IAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVEPWLEAIWDQ 191
K P +A+++ I EG+SLA LG ++VE+D +A+NL+ K+ GE W+E I
Sbjct: 125 VKTPLLAKILAIREGLSLATRLGVHRVVVETDSLEALNLIGDKSPWKGEAVSWVEDIRAF 184
Query: 192 LTFFSNVIFVYTSRKKNGVA 207
F + F + R+ N VA
Sbjct: 185 ARDFQEICFQHVFRESNAVA 190
BLAST of Lag0026139 vs. ExPASy TrEMBL
Match:
A0A803PIB6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 94.0 bits (232), Expect = 8.4e-16
Identity = 64/212 (30.19%), Postives = 98/212 (46.23%), Query Frame = 0
Query: 2 DRWLKINDFASLSELELIAVTSWSIWSDRNKKVHGQSILPINTKNSWINNYQRIFLDANS 61
D L ++ + SELE + T W IWSDRN +H + + +S Y F S
Sbjct: 1596 DYLLFLSTILTKSELEKLFCTMWFIWSDRNNYIHCKQLKHPMAISSQAEAYLANFHSVKS 1655
Query: 62 RRAENLPLRRNLESELHCWIPPSGNMWKVNVDAAWTSSPPSTGLGAIIRVSMGNIVGAST 121
A + ++ W+PP+ + K+NVDAA SS G+G IIR S G ++ A +
Sbjct: 1656 ATAPAVSCVA-ADARTVKWVPPTESNLKMNVDAALDSSRNKIGIGVIIRDSTGRVIAAMS 1715
Query: 122 FSVKIDYKAPIAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVEPWLE 181
V ++K+ E +F G+ AK L + VE+DC ++ + K +E
Sbjct: 1716 KPVVGNFKSQEMEAKAMFWGLQWAKQLQLQPHCVETDCLMLVHALQGKQSQLSSFHDLVE 1775
Query: 182 AIWDQLTFFSNVIFVYTSRKKNGVADGITKRA 214
I L+ FSN + R N A G+ K+A
Sbjct: 1776 DISYHLSSFSNACISHVRRDANQAAHGLAKQA 1806
BLAST of Lag0026139 vs. ExPASy TrEMBL
Match:
A0A1R3H2R0 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_21633 PE=4 SV=1)
HSP 1 Score: 93.2 bits (230), Expect = 1.4e-15
Identity = 59/206 (28.64%), Postives = 97/206 (47.09%), Query Frame = 0
Query: 8 NDFASLSELELIAVTSWSIWSDRNKKVHGQSILPINTKNSWINNYQRIFLDANSRRAENL 67
N A L L+ + +T W +W +RN+ H Q+ + ++ I + R +
Sbjct: 1566 NKAAQLGSLDRVFLTLWVLWGNRNRCYHDQTCATRSKLSATIEFHLRQVSRIQGQGQRTE 1625
Query: 68 PLRRNLESELHCWIPPSGNMWKVNVDAAWTSSPPSTGLGAIIRVSMGNIVGASTFSVKID 127
RR + W PP+ + KVNVDAA+ + GL A+ R S G ++ + +
Sbjct: 1626 THRREI-----VWTPPAEGIAKVNVDAAFVNPQDGAGLAAVARDSNGEVLCSVAAKDRFV 1685
Query: 128 YKAPIAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVEPWLEAIWDQL 187
+ AE+ T+ GV +A+ G ++ESDC + + KK V E + LE I D
Sbjct: 1686 KDSLYAEIFTVCLGVLMARQEGFNHCVIESDCLMVVLALNKKGRVSWEGDCVLEEIRDLA 1745
Query: 188 TFFSNVIFVYTSRKKNGVADGITKRA 214
+FF ++ FV+ R+ N A + K A
Sbjct: 1746 SFFDSISFVHVKREANVCAHSLAKHA 1766
BLAST of Lag0026139 vs. ExPASy TrEMBL
Match:
A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)
HSP 1 Score: 92.8 bits (229), Expect = 1.9e-15
Identity = 63/211 (29.86%), Postives = 101/211 (47.87%), Query Frame = 0
Query: 9 DFASLSELELIAVTSWSIWSDRNKK----VHGQS-ILPINTKNSWINNYQRIFLDANSRR 68
D A E + +W IW RNK VH ++ + + IN+ R
Sbjct: 2 DKAGEEERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKGKST 61
Query: 69 AENLPLRRNLESELHC-WIPPSGNMWKVNVDAAWTSSPPSTGLGAIIRVSMGNIVGASTF 128
++L L R +E W PP+ N WK+N +AAW + + G+G I+R G ++ AS
Sbjct: 62 NKDLHLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCR 121
Query: 129 SVKIDYKAPIAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVEPWLEA 188
++ + EVM I EG+ + C+ I +ESD +AI+L+ ++ + E+ LE
Sbjct: 122 IIRAERNITYLEVMAICEGLRAIRQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEE 181
Query: 189 IWDQLTFFSNVIFVYTSRKKNGVADGITKRA 214
IW + V + SR+ N VA G+ +RA
Sbjct: 182 IWQMMKDMEIVSMRHISREANKVAHGLARRA 212
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DX30 | 1.4e-18 | 30.37 | uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... | [more] |
A0A6J1DZK3 | 7.6e-17 | 31.50 | uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024... | [more] |
A0A803PIB6 | 8.4e-16 | 30.19 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A1R3H2R0 | 1.4e-15 | 28.64 | Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_21633 PE=4 SV... | [more] |
A0A6J1CP26 | 1.9e-15 | 29.86 | uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013... | [more] |
Match Name | E-value | Identity | Description | |