Lag0025809 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0025809
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Locationchr10: 21359129 .. 21359688 (+)
RNA-Seq ExpressionLag0025809
SyntenyLag0025809
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGCTAATCAACGCCACACTCCCACCGGCAGCGTTGGCCTATGCTGTTGGTTATACATCATCCAAACAAGCTTGGGAAGTCTTGGAGAAGCACTATTCCTCAAGTTTAAGAACCAACATCGTCAATCTAAAATCCGATCTTCAATCTATCTCTAAGAAACTGGGTGAGTCCATTGATGACTATGTTAAACGAATTAAGGAGCTTTTTAAGGACAAGTTAGTTAATGTCTCTATTATTATGGATGAAGAGGATATTCAAATTTATACCCTAAATGACATACCCTCTGATTTTAATACCTTTTGCACGACTATGAGAACCTGTTCACAGTCTGTTACTTTCGATGAGTTCATGTTTTATTGAAGACCGAAGAAGCTGCCATTGAAAAACAGACGAAACATGATGATGCCCTAACTCAACCAGCAACTATGTTTACATCGCAACCAACTCCTAACTCTTCTCAACGTTCAAATCCGTTTGGAAATTTTGGTAGAGGAAGATCATCTGGTCGTGGACGAAATCAAAACCGTGGTGGTCATGGCTTCAATCAATCTGGGTGA

mRNA sequence

ATGACGCTAATCAACGCCACACTCCCACCGGCAGCGTTGGCCTATGCTGTTGGTTATACATCATCCAAACAAGCTTGGGAAGTCTTGGAGAAGCACTATTCCTCAAGTTTAAGAACCAACATCGTCAATCTAAAATCCGATCTTCAATCTATCTCTAAGAAACTGGGTGAGTCCATTGATGACTATGTTAAACGAATTAAGGAGCTTTTTAAGGACAAGTTAGTTAATACCGAAGAAGCTGCCATTGAAAAACAGACGAAACATGATGATGCCCTAACTCAACCAGCAACTATGTTTACATCGCAACCAACTCCTAACTCTTCTCAACGTTCAAATCCGTTTGGAAATTTTGGTAGAGGAAGATCATCTGGTCGTGGACGAAATCAAAACCGTGGTGGTCATGGCTTCAATCAATCTGGGTGA

Coding sequence (CDS)

ATGACGCTAATCAACGCCACACTCCCACCGGCAGCGTTGGCCTATGCTGTTGGTTATACATCATCCAAACAAGCTTGGGAAGTCTTGGAGAAGCACTATTCCTCAAGTTTAAGAACCAACATCGTCAATCTAAAATCCGATCTTCAATCTATCTCTAAGAAACTGGGTGAGTCCATTGATGACTATGTTAAACGAATTAAGGAGCTTTTTAAGGACAAGTTAGTTAATACCGAAGAAGCTGCCATTGAAAAACAGACGAAACATGATGATGCCCTAACTCAACCAGCAACTATGTTTACATCGCAACCAACTCCTAACTCTTCTCAACGTTCAAATCCGTTTGGAAATTTTGGTAGAGGAAGATCATCTGGTCGTGGACGAAATCAAAACCGTGGTGGTCATGGCTTCAATCAATCTGGGTGA

Protein sequence

MTLINATLPPAALAYAVGYTSSKQAWEVLEKHYSSSLRTNIVNLKSDLQSISKKLGESIDDYVKRIKELFKDKLVNTEEAAIEKQTKHDDALTQPATMFTSQPTPNSSQRSNPFGNFGRGRSSGRGRNQNRGGHGFNQSG
Homology
BLAST of Lag0025809 vs. NCBI nr
Match: XP_022157455.1 (uncharacterized protein LOC111024149 [Momordica charantia])

HSP 1 Score: 110.9 bits (276), Expect = 8.8e-21
Identity = 82/183 (44.81%), Postives = 98/183 (53.55%), Query Frame = 0

Query: 1   MTLINATLPPAALAYAVGYTSSKQAWEVLEKHYSSSLRTNIVNLKSDLQSISKKLGESID 60
           MTLINATL P+A AY VG TSSK+ W+ LEKHYSSS RTN+VNLKSDLQSISKK+GE ID
Sbjct: 1   MTLINATLSPSAPAYVVGSTSSKEIWDTLEKHYSSSSRTNVVNLKSDLQSISKKVGECID 60

Query: 61  DYVKRIKELFKDKLVN-------------------------------------------- 120
           DYVKRIKE+ KDKL N                                            
Sbjct: 61  DYVKRIKEV-KDKLTNVSVVVDDEDLLIYTLNGLPSAYNVFRTSMRTRSQSVTFDELHVL 120

Query: 121 --TEEAAIEKQTKHDDALTQPATMFTSQPTPN------SSQRSNPFGNFGRGRSSGRGRN 132
             +EE A+++Q K DD  +Q   +F + P P+      +S  S   GN G GR+ G   N
Sbjct: 121 MKSEEVALDRQVKRDDLFSQNTALF-AVPNPSHMAPVYNSNSSRGKGNQGHGRTIG---N 178

BLAST of Lag0025809 vs. NCBI nr
Match: XP_022150845.1 (uncharacterized protein LOC111018892 [Momordica charantia])

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-19
Identity = 81/182 (44.51%), Postives = 96/182 (52.75%), Query Frame = 0

Query: 1   MTLINATLPPAALAYAVGYTSSKQAWEVLEKHYSSSLRTNIVNLKSDLQSISKKLGESID 60
           MTLINATL   ALAY V   +SKQ WEVLEKHYSS+ RTN+VNLKSDLQSI KK  ESID
Sbjct: 121 MTLINATLSAEALAYVVRSGTSKQVWEVLEKHYSSNSRTNVVNLKSDLQSIVKKTEESID 180

Query: 61  DYVKRIKELFKDKLVN-------------------------------------------- 120
            YVKRIKE+ KDK  N                                            
Sbjct: 181 AYVKRIKEI-KDKFANVSITINDEYLLIYALNGLSTEYNTLSTSMRTRAQSVSFEELHVF 240

Query: 121 --TEEAAIEKQTKHDDALTQPATMFTSQPTPNSSQRSNPFGNFGRGRSSGRGRNQNRGGH 137
             +EE+AIEKQ K +D +TQP  +F S  +P S  R++ F +  +    GRG+N  RG  
Sbjct: 241 MKSEESAIEKQMKREDLVTQPNALFAS--SPQSQNRTSAF-HPNQSHDRGRGKNNGRGKA 298

BLAST of Lag0025809 vs. NCBI nr
Match: XP_022159298.1 (uncharacterized protein LOC111025709 [Momordica charantia])

HSP 1 Score: 101.7 bits (252), Expect = 5.4e-18
Identity = 79/181 (43.65%), Postives = 94/181 (51.93%), Query Frame = 0

Query: 1   MTLINATLPPAALAYAVGYTSSKQAWEVLEKHYSSSLRTNIVNLKSDLQSISKKLGESID 60
           MTL+NATL P+ALAY VG  SS+Q W+ L K+YSSS RTN+VNLKS+LQSISKK GESID
Sbjct: 59  MTLLNATLSPSALAYMVGCDSSQQVWQTLVKYYSSSSRTNVVNLKSNLQSISKKPGESID 118

Query: 61  DYVKRIKELFKDKLVNT------------------------------------------- 120
            Y++RIKEL KDKL N                                            
Sbjct: 119 LYMQRIKEL-KDKLANVSVLVDNEDLLIYTLNGLPPEFNAFCTSMCTRSQSVSFEELYVL 178

Query: 121 ---EEAAIEKQTKHDDALTQPATMFTSQPTPNSSQRSNPFGNFGRGRSSGRGRNQNRGGH 136
              EEAAI+KQTKHD+   Q +T+  +  T    Q SNP        +  R R  N GG 
Sbjct: 179 LVYEEAAIDKQTKHDEVFVQSSTLLANMAT--KGQNSNP--------NIPRVRGFNGGGK 228

BLAST of Lag0025809 vs. NCBI nr
Match: KAG6588985.1 (Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.4 bits (246), Expect = 2.7e-17
Identity = 80/186 (43.01%), Postives = 93/186 (50.00%), Query Frame = 0

Query: 1   MTLINATLPPAALAYAVGYTSSKQAWEVLEKHYSSSLRTNIVNLKSDLQSISKKLGESID 60
           MT+INATL P ALAY VG T+SKQ W VL K YSSS R+N+VNLKSDLQ+ISKK  ESID
Sbjct: 83  MTVINATLSPEALAYVVGSTTSKQVWNVLAKLYSSSSRSNVVNLKSDLQTISKKSDESID 142

Query: 61  DYVKRIKELFKDKLVN-------------------------------------------- 120
            Y+KRIKE+ KDKL N                                            
Sbjct: 143 AYIKRIKEI-KDKLANVSTVVNDEDLLIYALNGLPTEYNTFRTSMRTRSTPVTFEELHVL 202

Query: 121 --TEEAAIEKQTKHDDALTQPATMFTSQPTPNSSQRSNPFGNFGRGRSSGRGRNQNRGGH 141
              EE+A+ KQ+K DD   QP  +  S  +   S  S    NF RGR  GRGR    G  
Sbjct: 203 LKAEESALAKQSKRDDLCKQPTALLASSQS-LMSYASTFNNNFVRGR--GRGRGHGHGCS 262

BLAST of Lag0025809 vs. NCBI nr
Match: XP_022158689.1 (uncharacterized protein LOC111025150 [Momordica charantia])

HSP 1 Score: 99.4 bits (246), Expect = 2.7e-17
Identity = 55/76 (72.37%), Postives = 61/76 (80.26%), Query Frame = 0

Query: 1   MTLINATLPPAALAYAVGYTSSKQAWEVLEKHYSSSLRTNIVNLKSDLQSISKKLGESID 60
           MTL+NA L  +ALAY VG  SS+Q W+ L KHYSSS RTN+VNLKSDLQSISKK G SID
Sbjct: 94  MTLLNAXLSSSALAYVVGCDSSQQVWQTLVKHYSSSSRTNVVNLKSDLQSISKKPGXSID 153

Query: 61  DYVKRIKELFKDKLVN 77
            YV+RIKEL KDKL N
Sbjct: 154 XYVQRIKEL-KDKLAN 168

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022157455.18.8e-2144.81uncharacterized protein LOC111024149 [Momordica charantia][more]
XP_022150845.11.3e-1944.51uncharacterized protein LOC111018892 [Momordica charantia][more]
XP_022159298.15.4e-1843.65uncharacterized protein LOC111025709 [Momordica charantia][more]
KAG6588985.12.7e-1743.01Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyr... [more]
XP_022158689.12.7e-1772.37uncharacterized protein LOC111025150 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 2..72
e-value: 1.7E-9
score: 37.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..140
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0025809.1Lag0025809.1mRNA