Lag0025796 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0025796
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	SWIM-type domain-containing protein
Location	chr10: 20757322 .. 20758187 (+)
RNA-Seq Expression	Lag0025796
Synteny	Lag0025796

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCAAATTCCAACGTTTGCTGCAGGTTGTTCGAAAGGAATCCAGATATTTACCATTTGTACTGTCAGTTTATAACATTCTATTCTAGTATATAATGATATTTATTGTCTACAATTATAGGTACGTACATCGCTCAGGAAGTTGATTCAAATGACAGGTTCAAGTTCTTCTTCATGAGTATTGCAACATCCATAAATGGGTGAAAACACTGTCTCCCAGTTATTTCGGTAGATGGTACATCTTTGAAGAATAAATTTAGTGGCACCCTTTTGACGACCTGCATATTTGATGGTAGCTCAAAGATATTTCCACTGGCTTTTTCTATTGTAGATTCTGAAAATGATGAGTCATGGTAGTGGTTTTTCCAAAACTTAAAAGCAGCGTTTGGAGAACCGGATGATTTAGTAATAGTGTCTGACAAGCATAAGAGTATTGGTAAAGGAAGGTGTTACGGAGGTATATACATCAACACATCATGGTGTATGTATTTATCATTTAAGGAACATTAAAGAAAATCACAAAGCAAAGGCCATTGATGATTTGTTTTAAAAGTGTGCTAAATCGTATACTATCAGGGATTTCGAATACTACATGAGGCAGATGGAAGAAATCATTCCTTCTATTAGGGGTGAGCTTGAGGAGGTGGGGTATGCGCGGTGGACTCGTGCAATTTCCACGAGCAAACAGTACGTGTTGATGACTACTAATATTTCGGAGAGTCTAAATGCTTATCTGAGAGAGGCTCGTGAATTACCTATCATCCCATTGTTGGAGTTTATAAGAGATTTTTTTACAACGATGGTTCTACGAGCAGAGGAACCATGCAAGCATTCAGAGGTGTACCATTACAACATATGCAACTGA

mRNA sequence

ATGCGCAAATTCCAACGTTTGCTGCAGGTTGTTCGAAAGGAATCCAGATATTTACCATTTGTACTGGATTTCGAATACTACATGAGGCAGATGGAAGAAATCATTCCTTCTATTAGGGGTGAGCTTGAGGAGGTGGGGTATGCGCGGTGGACTCGTGCAATTTCCACGAGCAAACAGTACGTGTTGATGACTACTAATATTTCGGAGAGTCTAAATGCTTATCTGAGAGAGGCTCGTGAATTACCTATCATCCCATTGTTGGAGTTTATAAGAGATTTTTTTACAACGATGGTTCTACGAGCAGAGGAACCATGCAAGCATTCAGAGGTGTACCATTACAACATATGCAACTGA

Coding sequence (CDS)

ATGCGCAAATTCCAACGTTTGCTGCAGGTTGTTCGAAAGGAATCCAGATATTTACCATTTGTACTGGATTTCGAATACTACATGAGGCAGATGGAAGAAATCATTCCTTCTATTAGGGGTGAGCTTGAGGAGGTGGGGTATGCGCGGTGGACTCGTGCAATTTCCACGAGCAAACAGTACGTGTTGATGACTACTAATATTTCGGAGAGTCTAAATGCTTATCTGAGAGAGGCTCGTGAATTACCTATCATCCCATTGTTGGAGTTTATAAGAGATTTTTTTACAACGATGGTTCTACGAGCAGAGGAACCATGCAAGCATTCAGAGGTGTACCATTACAACATATGCAACTGA

Protein sequence

MRKFQRLLQVVRKESRYLPFVLDFEYYMRQMEEIIPSIRGELEEVGYARWTRAISTSKQYVLMTTNISESLNAYLREARELPIIPLLEFIRDFFTTMVLRAEEPCKHSEVYHYNICN

Homology

[Close]

BLAST of Lag0025796 vs. NCBI nr
Match: XP_008442298.1 (PREDICTED: uncharacterized protein LOC103486212 [Cucumis melo])

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-13
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 22  LDFEYYMRQMEEIIPSIRGELEEVGYARWTRAISTSKQYVLMTTNISESLNAYLREAREL 81
           L+FEYYMRQ+E++ PS+R ELE VG  +W RA    K+Y ++TTNISES+N+ L+E REL
Sbjct: 58  LEFEYYMRQLEQLSPSMRHELEAVGRHKWARAFFRRKRYQVITTNISESMNSTLKEQREL 117

Query: 82  PIIPLLEFIR 92
           PII LLE IR
Sbjct: 118 PIIGLLESIR 127

[Close]

BLAST of Lag0025796 vs. NCBI nr
Match: KAA0035755.1 (uncharacterized protein E6C27_scaffold403G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-13
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 22  LDFEYYMRQMEEIIPSIRGELEEVGYARWTRAISTSKQYVLMTTNISESLNAYLREAREL 81
           L+FEYYMRQ+E++ PS+R ELE VG  +W RA    K+Y ++TTNISES+N+ L+E REL
Sbjct: 171 LEFEYYMRQLEQLSPSMRHELEAVGRHKWARAFFRRKRYQVITTNISESMNSTLKEQREL 230

Query: 82  PIIPLLEFIR 92
           PII LLE IR
Sbjct: 231 PIIGLLESIR 240

[Close]

BLAST of Lag0025796 vs. NCBI nr
Match: XP_016901440.1 (PREDICTED: uncharacterized protein LOC107991253 [Cucumis melo])

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-13
Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 22  LDFEYYMRQMEEIIPSIRGELEEVGYARWTRAISTSKQYVLMTTNISESLNAYLREAREL 81
           L+FEYYMRQ+E++ PS+R ELE VG  +W RA    K+Y ++TTNISES+N+ L+E REL
Sbjct: 374 LEFEYYMRQLEQLSPSMRHELEAVGRHKWARAFFRRKRYQVITTNISESMNSTLKEQREL 433

Query: 82  PIIPLLEFIR 92
           P+I LLE IR
Sbjct: 434 PVIGLLESIR 443

[Close]

BLAST of Lag0025796 vs. NCBI nr
Match: TYK29863.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-13
Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 22  LDFEYYMRQMEEIIPSIRGELEEVGYARWTRAISTSKQYVLMTTNISESLNAYLREAREL 81
           L+FEYYMRQ+E++ PS+R ELE VG  +W RA    K+Y ++TTNISES+N+ L+E REL
Sbjct: 374 LEFEYYMRQLEQLSPSMRHELEAVGRHKWARAFFRRKRYQVITTNISESMNSTLKEQREL 433

Query: 82  PIIPLLEFIR 92
           P+I LLE IR
Sbjct: 434 PVIGLLESIR 443

[Close]

BLAST of Lag0025796 vs. NCBI nr
Match: XP_008444294.1 (PREDICTED: uncharacterized protein LOC103487663 [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 1.9e-13
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 22  LDFEYYMRQMEEIIPSIRGELEEVGYARWTRAISTSKQYVLMTTNISESLNAYLREAREL 81
           L+FEYYMRQ++++ PS+R ELE VG  +W RA    K+Y +MTTNISES+N+ L+E REL
Sbjct: 111 LEFEYYMRQLKQLSPSMRHELEAVGRHKWARAFFKRKRYQVMTTNISESMNSTLKEQREL 170

Query: 82  PIIPLLEFIR 92
           P+I LLE +R
Sbjct: 171 PVIGLLESVR 180

The following BLAST results are available for this feature:

BLAST of Lag0025796 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442298.1	1.1e-13	61.43	PREDICTED: uncharacterized protein LOC103486212 [Cucumis melo]	[more]
KAA0035755.1	1.1e-13	61.43	uncharacterized protein E6C27_scaffold403G00270 [Cucumis melo var. makuwa]	[more]
XP_016901440.1	1.5e-13	60.00	PREDICTED: uncharacterized protein LOC107991253 [Cucumis melo]	[more]
TYK29863.1	1.5e-13	60.00	MuDRA-like transposase [Cucumis melo var. makuwa]	[more]
XP_008444294.1	1.9e-13	58.57	PREDICTED: uncharacterized protein LOC103487663 [Cucumis melo]	[more]

BLAST of Lag0025796 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0025796.1	Lag0025796.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
biological_process	GO:0032196	transposition
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding