Lag0025262 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0025262
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr10: 10598370 .. 10598885 (+)
RNA-Seq ExpressionLag0025262
SyntenyLag0025262
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACGGAGGATTTAATCAACGAATGGCAAAAGTTCAGCCTGATGGAGCGTGAAAAAGAGCCATCCATTTCGTTTAAACCTGAGGAGAGATCGAATATTGAAGGTAATCTTGGTCATAATCTAATCGGAAAGTTACTATCTAGTAGAATCATTTCAAGTCTGGCAATAAAGAATGCGATGGTTGGAGCTTGGAAGACCAGACATAAATTCAGTATTAAGGTACCTGGAAAGAACCTTTTTGCCTTCAAATTCAGTAGCCAGGAGGACAGGGATTGGGTGCCTGCCAATGGCCCTTGGCTCTTCGACAGATCTTTACTCATTCTTGAAATTCCGGCAGCAGATCAATGTATCTCTAAGTTGAAATTCAATAGAGTGGCCTTTTGGTTAAGATTAATTAACTTGCCAATGGGCTACCAGAATAAATGTGCGGCGGAAAAATTTGGAAACCTTATTGGTGAATTCTTGGAGATGGAAGATGAGGAAGAGGATCTTGGTTGGAGGGACAACATCTGA

mRNA sequence

ATGGAAACGGAGGATTTAATCAACGAATGGCAAAAGTTCAGCCTGATGGAGCGTGAAAAAGAGCCATCCATTTCGTTTAAACCTGAGGAGAGATCGAATATTGAAGGTAATCTTGGTCATAATCTAATCGGAAAGTTACTATCTAGTAGAATCATTTCAAGTCTGGCAATAAAGAATGCGATGGTTGGAGCTTGGAAGACCAGACATAAATTCAGTATTAAGGTACCTGGAAAGAACCTTTTTGCCTTCAAATTCAGTAGCCAGGAGGACAGGGATTGGGTGCCTGCCAATGGCCCTTGGCTCTTCGACAGATCTTTACTCATTCTTGAAATTCCGGCAGCAGATCAATGTATCTCTAAGTTGAAATTCAATAGAGTGGCCTTTTGGTTAAGATTAATTAACTTGCCAATGGGCTACCAGAATAAATGTGCGGCGGAAAAATTTGGAAACCTTATTGGTGAATTCTTGGAGATGGAAGATGAGGAAGAGGATCTTGGTTGGAGGGACAACATCTGA

Coding sequence (CDS)

ATGGAAACGGAGGATTTAATCAACGAATGGCAAAAGTTCAGCCTGATGGAGCGTGAAAAAGAGCCATCCATTTCGTTTAAACCTGAGGAGAGATCGAATATTGAAGGTAATCTTGGTCATAATCTAATCGGAAAGTTACTATCTAGTAGAATCATTTCAAGTCTGGCAATAAAGAATGCGATGGTTGGAGCTTGGAAGACCAGACATAAATTCAGTATTAAGGTACCTGGAAAGAACCTTTTTGCCTTCAAATTCAGTAGCCAGGAGGACAGGGATTGGGTGCCTGCCAATGGCCCTTGGCTCTTCGACAGATCTTTACTCATTCTTGAAATTCCGGCAGCAGATCAATGTATCTCTAAGTTGAAATTCAATAGAGTGGCCTTTTGGTTAAGATTAATTAACTTGCCAATGGGCTACCAGAATAAATGTGCGGCGGAAAAATTTGGAAACCTTATTGGTGAATTCTTGGAGATGGAAGATGAGGAAGAGGATCTTGGTTGGAGGGACAACATCTGA

Protein sequence

METEDLINEWQKFSLMEREKEPSISFKPEERSNIEGNLGHNLIGKLLSSRIISSLAIKNAMVGAWKTRHKFSIKVPGKNLFAFKFSSQEDRDWVPANGPWLFDRSLLILEIPAADQCISKLKFNRVAFWLRLINLPMGYQNKCAAEKFGNLIGEFLEMEDEEEDLGWRDNI
Homology
BLAST of Lag0025262 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 142.9 bits (359), Expect = 2.6e-30
Identity = 66/167 (39.52%), Postives = 105/167 (62.87%), Query Frame = 0

Query: 1   METEDLINEWQKFSLMEREKEPSISFKPEERSNIEGNLGHNLIGKLLSSRIISSLAIKNA 60
           M+ E+L+ +WQKF L   E E ++    +     E  L ++L+GKLL+ RIIS+  +   
Sbjct: 1   MDHENLLADWQKFKLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRV 60

Query: 61  MVGAWKTRHKFSIKVPGKNLFAFKFSSQEDRDWVPANGPWLFDRSLLILEIPAADQCISK 120
           ++ AWK  H+ +++  GKNLF F F  + D + V   GPW FD++L++L+ P + + IS+
Sbjct: 61  LLLAWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKPCSSKNISE 120

Query: 121 LKFNRVAFWLRLINLPMGYQNKCAAEKFGNLIGEFLEMEDEEEDLGW 168
           L+FNRVAFW+ L +LPM + NK  A + GN IG F++++  E+   W
Sbjct: 121 LEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVDVDCNEKGFSW 167

BLAST of Lag0025262 vs. NCBI nr
Match: MCH96370.1 (hypothetical protein [Trifolium medium])

HSP 1 Score: 111.3 bits (277), Expect = 8.3e-21
Identity = 53/144 (36.81%), Postives = 91/144 (63.19%), Query Frame = 0

Query: 19  EKEPSISFKPEERSNIEGNLGHNLIGKLLSSRIISSLAIKNAMVGAWKTRHKFSIKVPGK 78
           E++ +I  + EE  N + +    L+GK+ +    +  A K  M  AW+ R+   I+   +
Sbjct: 12  EEDEAILVEAEEMCNDDESFNRTLVGKIWTESPYNVRAFKQTMTQAWRCRNPVDIQDLNR 71

Query: 79  NLFAFKFSSQEDRDWVPANGPWLFDRSLLILEIPAADQCISKLKFNRVAFWLRLINLPMG 138
           NLF FKF+++++ + V  NGPW FDR+LLIL   + D+  S+L+ NRV+FW+R+ +LP+ 
Sbjct: 72  NLFLFKFATKKEAELVCRNGPWSFDRNLLILNRISGDEQPSELEMNRVSFWVRVYDLPLK 131

Query: 139 YQNKCAAEKFGNLIGEFLEMEDEE 163
            +++  A+K GN++G F EM+ +E
Sbjct: 132 LRSEGMAKKLGNILGNFEEMDTKE 155

BLAST of Lag0025262 vs. NCBI nr
Match: XP_024042744.1 (uncharacterized protein LOC112099563 [Citrus clementina])

HSP 1 Score: 109.8 bits (273), Expect = 2.4e-20
Identity = 58/164 (35.37%), Postives = 99/164 (60.37%), Query Frame = 0

Query: 1   METEDLINEWQKFSLME-REKEPSISFKPEERSNIEGNLGHNLIGKLLSSRIISSLAIKN 60
           M+TE+LI + +  S+ E  E++ ++    EE+      + ++LIGK+L SR + +  I+N
Sbjct: 1   MDTEELIRKCKAISICEGAERKLTLRSGMEEKGGC--IIANSLIGKILLSRSVHTEGIRN 60

Query: 61  AMVGAWKTRHKFSIKVPGKNLFAFKFSSQEDRDWVPANGPWLFDRSLLILEIPAADQCIS 120
           A+V AW+T  +  I+  G N+  FKF  + D+  V A GPW FDR+L++L+ P+    + 
Sbjct: 61  ALVQAWRTTKEVKIESLGNNIVIFKFGLEVDKRKVLAGGPWHFDRALIVLKEPSGIGNMR 120

Query: 121 KLKFNRVAFWLRLINLPMGYQNKCAAEKFGNLIGEFLEMEDEEE 164
           K  F   AFW+++ N+P+    +   +K G L+GE LE+E ++E
Sbjct: 121 KQAFTHAAFWIQIHNVPLACMERDNVQKLGGLLGEVLEVETDDE 162

BLAST of Lag0025262 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-19
Identity = 58/172 (33.72%), Postives = 91/172 (52.91%), Query Frame = 0

Query: 1   METEDLINEWQKFSLMEREKEPSISFKPEERSNIEGNLGHNLIGKLLSSRIISSLAIKNA 60
           M T DL+ EW+ F L   E+E +I       +     L   L+GKL   R I+   +KN 
Sbjct: 1   MATFDLLEEWKNFKLTSEEEETAIDVDASAPATTGSRLEQILVGKLFIKRPITCPVMKNT 60

Query: 61  MVGAWKTRHK-FSIKVPGKNLFAFKFSSQEDRDWVPANGPWLFDRSLLILEIPAADQCIS 120
           M  AWK  +  F ++  G NLF F F+   DR+ +  +GPW FDR+L+++  P A    S
Sbjct: 61  MRTAWKLENNAFEVQSLGYNLFLFSFARALDRNKIYKSGPWTFDRTLVLINKPVALIPPS 120

Query: 121 KLKFNRVAFWLRLINLPMGYQNKCAAEKFGNLIGEFLEMEDEEEDLGWRDNI 172
           +L F ++  W+R  +LP+G   +  A + GN +G F E + ++ +  W  N+
Sbjct: 121 ELDFTKLPIWVRFFDLPLGCITRDMAIRLGNALGGFEEADCDDLNPDWGSNL 172

BLAST of Lag0025262 vs. NCBI nr
Match: MCH80348.1 (hypothetical protein [Trifolium medium])

HSP 1 Score: 107.1 bits (266), Expect = 1.6e-19
Identity = 51/144 (35.42%), Postives = 90/144 (62.50%), Query Frame = 0

Query: 19  EKEPSISFKPEERSNIEGNLGHNLIGKLLSSRIISSLAIKNAMVGAWKTRHKFSIKVPGK 78
           +++ +I+ + EE  N + +    L+GK+ +    +  A K  M  AW++R+   I+   K
Sbjct: 12  DEDEAITVEDEEVCNDDESFSRTLVGKIWTESPYNIRAFKQTMTQAWRSRNPIEIQDLNK 71

Query: 79  NLFAFKFSSQEDRDWVPANGPWLFDRSLLILEIPAADQCISKLKFNRVAFWLRLINLPMG 138
           NL+ FKF+++ + D V  NGPW FDR+LLIL I + ++  S+L  + V+FW+R+ +LP+ 
Sbjct: 72  NLYLFKFATKREADLVYRNGPWSFDRNLLILNIISGNEQPSELAMDHVSFWVRVYDLPLK 131

Query: 139 YQNKCAAEKFGNLIGEFLEMEDEE 163
            +++  A+K GN +G F EM+ +E
Sbjct: 132 LRSEGIAKKLGNTVGTFEEMDFKE 155

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156185.12.6e-3039.52uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... [more]
MCH96370.18.3e-2136.81hypothetical protein [Trifolium medium][more]
XP_024042744.12.4e-2035.37uncharacterized protein LOC112099563 [Citrus clementina][more]
XP_022158377.11.2e-1933.72uncharacterized protein LOC111024874 [Momordica charantia][more]
MCH80348.11.6e-1935.42hypothetical protein [Trifolium medium][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 34..169
e-value: 4.7E-22
score: 78.1
NoneNo IPR availablePANTHERPTHR31286:SF84SUBFAMILY NOT NAMEDcoord: 21..160
IPR040256Uncharacterized protein At4g02000-likePANTHERPTHR31286GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKEcoord: 21..160

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0025262.1Lag0025262.1mRNA