Lag0024992 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0024992
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Dof zinc finger protein
Location	chr10: 7533195 .. 7533707 (-)
RNA-Seq Expression	Lag0024992
Synteny	Lag0024992

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGCAGAGATCAGAAAGAAGAATGAAGATCAAGAGGGAGGAATTAAGCTGTTTGGGACAACAATTATGTTGCAGAATCAAGTGAAAGAAGAAGAAGAAGAAGAAGAACCCAACAACAAATCAGCTGAAAAGAAGCCTGAAAAGATCATTCCTTGCCCAAGATGCAAAAGCCTCGACACCAAATTTTGTTATTTCAACAATTACAACGTTAATCAGCCAAGGCATTTCTGCAAAGGTTGTCAGCGCTACTGGACCGCCGGTGGGGCCCTCCGGAATGTCCCCGTCGGTGCCGGCCGCCGCAAGACCAAGCCTCCCTGCCGGACCTTCGCTGGCTTGCCGGAAAATTGCGTCTTTGATTCTTCCGGGATGGTCGCCGTGCAGCCCTTTGAGTTGGAGGGTATGGTGGACGACTGGCATGTCGTCGCCGCCGCCGCCGCCACACAAAGTGGTTTCCGGCAAATTTTACCGGTGAAGAGGCGGAGGGATTGCCAAGACGGTCAAACTTGTTGA

mRNA sequence

ATGATGGCAGAGATCAGAAAGAAGAATGAAGATCAAGAGGGAGGAATTAAGCTGTTTGGGACAACAATTATGTTGCAGAATCAAGTGAAAGAAGAAGAAGAAGAAGAAGAACCCAACAACAAATCAGCTGAAAAGAAGCCTGAAAAGATCATTCCTTGCCCAAGATGCAAAAGCCTCGACACCAAATTTTGTTATTTCAACAATTACAACGTTAATCAGCCAAGGCATTTCTGCAAAGGTTGTCAGCGCTACTGGACCGCCGGTGGGGCCCTCCGGAATGTCCCCGTCGGTGCCGGCCGCCGCAAGACCAAGCCTCCCTGCCGGACCTTCGCTGGCTTGCCGGAAAATTGCGTCTTTGATTCTTCCGGGATGGTCGCCGTGCAGCCCTTTGAGTTGGAGGGTATGGTGGACGACTGGCATGTCGTCGCCGCCGCCGCCGCCACACAAAGTGGTTTCCGGCAAATTTTACCGGTGAAGAGGCGGAGGGATTGCCAAGACGGTCAAACTTGTTGA

Coding sequence (CDS)

ATGATGGCAGAGATCAGAAAGAAGAATGAAGATCAAGAGGGAGGAATTAAGCTGTTTGGGACAACAATTATGTTGCAGAATCAAGTGAAAGAAGAAGAAGAAGAAGAAGAACCCAACAACAAATCAGCTGAAAAGAAGCCTGAAAAGATCATTCCTTGCCCAAGATGCAAAAGCCTCGACACCAAATTTTGTTATTTCAACAATTACAACGTTAATCAGCCAAGGCATTTCTGCAAAGGTTGTCAGCGCTACTGGACCGCCGGTGGGGCCCTCCGGAATGTCCCCGTCGGTGCCGGCCGCCGCAAGACCAAGCCTCCCTGCCGGACCTTCGCTGGCTTGCCGGAAAATTGCGTCTTTGATTCTTCCGGGATGGTCGCCGTGCAGCCCTTTGAGTTGGAGGGTATGGTGGACGACTGGCATGTCGTCGCCGCCGCCGCCGCCACACAAAGTGGTTTCCGGCAAATTTTACCGGTGAAGAGGCGGAGGGATTGCCAAGACGGTCAAACTTGTTGA

Protein sequence

MMAEIRKKNEDQEGGIKLFGTTIMLQNQVKEEEEEEEPNNKSAEKKPEKIIPCPRCKSLDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFAGLPENCVFDSSGMVAVQPFELEGMVDDWHVVAAAAATQSGFRQILPVKRRRDCQDGQTC

Homology

[Close]

BLAST of Lag0024992 vs. NCBI nr
Match: XP_038895022.1 (dof zinc finger protein DOF1.5-like [Benincasa hispida])

HSP 1 Score: 301.2 bits (770), Expect = 5.6e-78
Identity = 144/173 (83.24%), Postives = 156/173 (90.17%), Query Frame = 0


Query: 7   KKNEDQEGGIKLFGTTIMLQN------QVKEEEEEEEPN---NKSAEKKPEKIIPCPRCK 66
           ++  + EGGIKLFGTTIMLQN      + ++EEEEEEPN    +S EK+PEKIIPCPRCK
Sbjct: 4   ERENNNEGGIKLFGTTIMLQNNRQIIKEEEDEEEEEEPNKSDQQSLEKRPEKIIPCPRCK 63

Query: 67  SLDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFAGLPENC 126
           S+DTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFAGLPENC
Sbjct: 64  SMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFAGLPENC 123

Query: 127 VFDSSGMVAVQPFELEGMVDDWHVVAAAAATQSGFRQILPVKRRRDCQDGQTC 171
           VFDSSGMVAVQPFELEGMV++WHVV AAAATQ GFRQ+LPVKRRRDCQDGQTC
Sbjct: 124 VFDSSGMVAVQPFELEGMVEEWHVV-AAAATQGGFRQMLPVKRRRDCQDGQTC 175

[Close]

BLAST of Lag0024992 vs. NCBI nr
Match: XP_008443229.1 (PREDICTED: dof zinc finger protein DOF1.5 [Cucumis melo] >KAA0057037.1 dof zinc finger protein DOF1.5 [Cucumis melo var. makuwa])

HSP 1 Score: 297.0 bits (759), Expect = 1.1e-76
Identity = 146/179 (81.56%), Postives = 156/179 (87.15%), Query Frame = 0


Query: 1   MMAEIR--KKNEDQE-GGIKLFGTTIMLQNQ---VKEEEEEEEPN---NKSAEKKPEKII 60
           MM E +  K NEDQ  GGIKLFG TIMLQN+   +KEEEEEEE N    ++ EK+PEKII
Sbjct: 1   MMGERKHDKNNEDQHGGGIKLFGATIMLQNKRQIIKEEEEEEEANKSDQQTLEKRPEKII 60

Query: 61  PCPRCKSLDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFA 120
           PCPRCKS+DTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVP+GAGRRKTKPPCRTF 
Sbjct: 61  PCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRKTKPPCRTFG 120

Query: 121 GLPENCVFDSSGMVAVQPFELEGMVDDWHVVAAAAATQSGFRQILPVKRRRDCQDGQTC 171
           GLPENCVFDSSG+V VQPFELEGMV+ WH V AAAATQ GFRQILPVKRRRDCQDGQTC
Sbjct: 121 GLPENCVFDSSGIVTVQPFELEGMVEKWHAV-AAAATQGGFRQILPVKRRRDCQDGQTC 178

[Close]

BLAST of Lag0024992 vs. NCBI nr
Match: XP_011657769.2 (dof zinc finger protein DOF1.5 [Cucumis sativus])

HSP 1 Score: 291.6 bits (745), Expect = 4.4e-75
Identity = 147/183 (80.33%), Postives = 157/183 (85.79%), Query Frame = 0


Query: 1   MMAEIR--KKNEDQ-EGGIKLFGTTIMLQNQ---VKEEEEEEE------PNNKSAEKKPE 60
           MM E +  K NEDQ EGGIKLFG TIMLQN+   +KEEEEEEE       + +S EK+PE
Sbjct: 1   MMGERKHDKNNEDQHEGGIKLFGATIMLQNKRQIIKEEEEEEEEEEANKSDQQSLEKRPE 60

Query: 61  KIIPCPRCKSLDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCR 120
           KIIPCPRCKS+DTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVP+GAGRRKTKPPCR
Sbjct: 61  KIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRKTKPPCR 120

Query: 121 TFAGLPENCVFDSSGM-VAVQPFELEGMVDDWHVVAAAAATQSGFRQILPVKRRRDCQDG 171
           TF GLPENCVFDSSG+ V VQPFELEGMV+ WHVV AAAATQ GFRQILPVKRRRDC DG
Sbjct: 121 TFGGLPENCVFDSSGINVTVQPFELEGMVEKWHVV-AAAATQGGFRQILPVKRRRDCPDG 180

[Close]

BLAST of Lag0024992 vs. NCBI nr
Match: XP_023519982.1 (dof zinc finger protein DOF1.5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 291.2 bits (744), Expect = 5.8e-75
Identity = 137/170 (80.59%), Postives = 150/170 (88.24%), Query Frame = 0


Query: 1   MMAEIRKKNEDQEGGIKLFGTTIMLQNQVKEEEEEEEPNNKSAEKKPEKIIPCPRCKSLD 60
           MMAE +K +EDQEGGIKLFG TIML N    +EE  + + +S EK+P+KIIPCPRCKS+D
Sbjct: 2   MMAERKKNDEDQEGGIKLFGATIMLHNNRILKEEPNDSDQQSTEKRPDKIIPCPRCKSMD 61

Query: 61  TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFAGLPENCVFD 120
           TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPC+TF GLPENCVFD
Sbjct: 62  TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCQTFGGLPENCVFD 121

Query: 121 SSGMVAVQPFELEGMVDDWHVVAAAAATQSGFRQILPVKRRRDCQDGQTC 171
           SSG+VAVQPFELEGMV++WHVVAAAA  Q GFRQILPVKRRR  QDGQ C
Sbjct: 122 SSGIVAVQPFELEGMVEEWHVVAAAA--QDGFRQILPVKRRRGYQDGQIC 169

[Close]

BLAST of Lag0024992 vs. NCBI nr
Match: XP_023000934.1 (cyclic dof factor 4-like [Cucurbita maxima])

HSP 1 Score: 288.9 bits (738), Expect = 2.9e-74
Identity = 136/170 (80.00%), Postives = 149/170 (87.65%), Query Frame = 0


Query: 1   MMAEIRKKNEDQEGGIKLFGTTIMLQNQVKEEEEEEEPNNKSAEKKPEKIIPCPRCKSLD 60
           MMAE +K +EDQEGGIKLFG TIML N    +EE  + + +S EK+P+KIIPCPRCKS+D
Sbjct: 2   MMAERKKNDEDQEGGIKLFGATIMLHNNRILKEEPNDSDQQSPEKRPDKIIPCPRCKSMD 61

Query: 61  TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFAGLPENCVFD 120
           TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPC+TF GLPENCVFD
Sbjct: 62  TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCQTFGGLPENCVFD 121

Query: 121 SSGMVAVQPFELEGMVDDWHVVAAAAATQSGFRQILPVKRRRDCQDGQTC 171
           SSG+VAVQPFELEGMV++WHVVAAAA    GFRQILPVKRRR  QDGQ C
Sbjct: 122 SSGIVAVQPFELEGMVEEWHVVAAAA--HDGFRQILPVKRRRGYQDGQIC 169

[Close]

BLAST of Lag0024992 vs. ExPASy Swiss-Prot
Match: P68350 (Dof zinc finger protein DOF1.5 OS=Arabidopsis thaliana OX=3702 GN=DOF1.5 PE=1 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.8e-42
Identity = 94/175 (53.71%), Postives = 116/175 (66.29%), Query Frame = 0


Query: 15  GIKLFGTTIM----LQNQVKEEEEEEE--------------PNNKSAEKKPEKIIPCPRC 74
           GIKLFG TI     +   +K+EE++++               ++ +AEK+P+KIIPCPRC
Sbjct: 8   GIKLFGKTITFNANITQTIKKEEQQQQQQPELQATTAVRSPSSDLTAEKRPDKIIPCPRC 67

Query: 75  KSLDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFAGLPEN 134
           KS++TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRK+KPP R   G  E 
Sbjct: 68  KSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSKPPGRV-GGFAE- 127

Query: 135 CVFDSSGMVAVQPFELEG-MVDDWHVVAAAAATQSGFRQILPVKRRRDCQDGQTC 171
                +   AV   EL+  +V++W    AA A+  GFR   PVKR R   DGQ+C
Sbjct: 128 --LLGAATGAVDQVELDALLVEEWR---AATASHGGFRHDFPVKRLRCYTDGQSC 175

[Close]

BLAST of Lag0024992 vs. ExPASy Swiss-Prot
Match: O22967 (Cyclic dof factor 4 OS=Arabidopsis thaliana OX=3702 GN=CDF4 PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 6.7e-42
Identity = 91/171 (53.22%), Postives = 112/171 (65.50%), Query Frame = 0


Query: 15  GIKLFGTTIMLQNQVKEEEEEEEP--------------NNKSAEKKPEKIIPCPRCKSLD 74
           GIKLFG TI    +  + EEE  P              ++ +AEK+P+KII CPRCKS++
Sbjct: 8   GIKLFGKTIAFNTRTIKNEEETHPPEQEATIAVRSSSSSDLTAEKRPDKIIACPRCKSME 67

Query: 75  TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFAGLPENCVFD 134
           TKFCYFNNYNVNQPRHFCKGC RYWTAGGALRNVPVGAGRRK+KPP R   G+    + D
Sbjct: 68  TKFCYFNNYNVNQPRHFCKGCHRYWTAGGALRNVPVGAGRRKSKPPGRVVVGM----LGD 127

Query: 135 SSGMVAVQPFELEG-MVDDWHVVAAAAATQSGFRQILPVKRRRDCQDGQTC 171
            +G+  V+   + G +V++W    AAAA    FR   P+KR R   DGQ+C
Sbjct: 128 GNGVRQVE--LINGLLVEEWQ--HAAAAAHGSFRHDFPMKRLRCYSDGQSC 170

[Close]

BLAST of Lag0024992 vs. ExPASy Swiss-Prot
Match: Q8W1E3 (Cyclic dof factor 1 OS=Arabidopsis thaliana OX=3702 GN=CDF1 PE=1 SV=2)

HSP 1 Score: 128.6 bits (322), Expect = 6.5e-29
Identity = 61/105 (58.10%), Postives = 75/105 (71.43%), Query Frame = 0


Query: 10  EDQEGGIKLFGTTIMLQNQVKEEEEEEEPN-NKSAE---------KKPEKIIPCPRCKSL 69
           E ++  IKLFG  I     ++  +EEEE N NK+           KKP KI+PCPRC S+
Sbjct: 3   ETKDPAIKLFGMKIPFPTVLEVADEEEEKNQNKTLTDQSEKDKTLKKPTKILPCPRCNSM 62

Query: 70  DTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTK 105
           +TKFCY+NNYNVNQPRHFCK CQRYWT+GG +R+VP+GAGRRK K
Sbjct: 63  ETKFCYYNNYNVNQPRHFCKACQRYWTSGGTMRSVPIGAGRRKNK 107

[Close]

BLAST of Lag0024992 vs. ExPASy Swiss-Prot
Match: Q8LFV3 (Cyclic dof factor 3 OS=Arabidopsis thaliana OX=3702 GN=CDF3 PE=1 SV=2)

HSP 1 Score: 125.9 bits (315), Expect = 4.2e-28
Identity = 53/74 (71.62%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 31  EEEEEEEPNNKSAEKKPEKIIPCPRCKSLDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGA 90
           E+ ++  P+ K+  KKP KI+PCPRCKS++TKFCY+NNYN+NQPRHFCK CQRYWTAGG 
Sbjct: 91  EDNQQTTPDGKTL-KKPTKILPCPRCKSMETKFCYYNNYNINQPRHFCKACQRYWTAGGT 150

Query: 91  LRNVPVGAGRRKTK 105
           +RNVPVGAGRRK K
Sbjct: 151 MRNVPVGAGRRKNK 163

[Close]

BLAST of Lag0024992 vs. ExPASy Swiss-Prot
Match: Q93ZL5 (Cyclic dof factor 2 OS=Arabidopsis thaliana OX=3702 GN=CDF2 PE=1 SV=2)

HSP 1 Score: 122.9 bits (307), Expect = 3.6e-27
Identity = 57/103 (55.34%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 8   KNEDQEGGIKLFGTTIMLQNQVKEEEEEEEPNNKSAE----KKPEKIIPCPRCKSLDTKF 67
           +NE  +      G T   +     +  EE      ++    KKP+KI+PCPRC S++TKF
Sbjct: 91  RNESNDVTTTTSGITEKTETTKAAKTNEESGGTACSQEGKLKKPDKILPCPRCNSMETKF 150

Query: 68  CYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPP 107
           CY+NNYNVNQPRHFCK CQRYWTAGG +RNVPVGAGRRK K P
Sbjct: 151 CYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKSP 193

The following BLAST results are available for this feature:

BLAST of Lag0024992 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895022.1	5.6e-78	83.24	dof zinc finger protein DOF1.5-like [Benincasa hispida]	[more]
XP_008443229.1	1.1e-76	81.56	PREDICTED: dof zinc finger protein DOF1.5 [Cucumis melo] >KAA0057037.1 dof zinc ...	[more]
XP_011657769.2	4.4e-75	80.33	dof zinc finger protein DOF1.5 [Cucumis sativus]	[more]
XP_023519982.1	5.8e-75	80.59	dof zinc finger protein DOF1.5-like [Cucurbita pepo subsp. pepo]	[more]
XP_023000934.1	2.9e-74	80.00	cyclic dof factor 4-like [Cucurbita maxima]	[more]

BLAST of Lag0024992 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P68350	1.8e-42	53.71	Dof zinc finger protein DOF1.5 OS=Arabidopsis thaliana OX=3702 GN=DOF1.5 PE=1 SV...	[more]
O22967	6.7e-42	53.22	Cyclic dof factor 4 OS=Arabidopsis thaliana OX=3702 GN=CDF4 PE=2 SV=1	[more]
Q8W1E3	6.5e-29	58.10	Cyclic dof factor 1 OS=Arabidopsis thaliana OX=3702 GN=CDF1 PE=1 SV=2	[more]
Q8LFV3	4.2e-28	71.62	Cyclic dof factor 3 OS=Arabidopsis thaliana OX=3702 GN=CDF3 PE=1 SV=2	[more]
Q93ZL5	3.6e-27	55.34	Cyclic dof factor 2 OS=Arabidopsis thaliana OX=3702 GN=CDF2 PE=1 SV=2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003851	Zinc finger, Dof-type	PFAM	PF02701	zf-Dof	coord: 49..104 e-value: 1.1E-31 score: 108.8
IPR003851	Zinc finger, Dof-type	PROSITE	PS01361	ZF_DOF_1	coord: 53..89
IPR003851	Zinc finger, Dof-type	PROSITE	PS50884	ZF_DOF_2	coord: 51..105 score: 28.388029
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..47
None	No IPR available	PANTHER	PTHR31089:SF49	DOF ZINC FINGER PROTEIN DOF1.5-LIKE	coord: 12..163
None	No IPR available	PANTHER	PTHR31089	CYCLIC DOF FACTOR 2	coord: 12..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0024992.1	Lag0024992.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity