Lag0024865 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0024865
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr10: 6497773 .. 6500964 (-)
RNA-Seq Expression	Lag0024865
Synteny	Lag0024865

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAAACGGGGAAATTTCTCTGAAACCTTTCGCCCCAATATGAGTGAAGAAGCCTATGGTTGGTCCCCAATTGGGGCTCCTCTAGACGTCCAGAGAGAGGACCACTGGAGGCATTTCGATAACTCGGTCGATGCTGTCTCTTTTGGCTTTGTTGCCACTGCCATTCTCGTCTCAATGTTCTTGCTCATGGCTATCTTTGAGAGGTTTTTGCGACCCGCTCCGACGGCTTTCTCTCACGCCGGTCCCCGGAGCCACCTTGACCCCGAGGCTCAGATGGGTCTTGCTGGAAAGCTCGGTCACCCCTCACCCAAAGTGAGTTTGCCCAATTTGTTCCTATTCCTTCTGCGATTTTTAGATTATGCTGTCATTTTGCTGGTTTTCTTATCTGGGTTTGTTGGATTCTCGAGTTGAATGCAGAAATGAATCCGGTTTAGAGAATGTTGTCAGTGTTTTTCTTTGTTCATTTATCTGATTTTTTGTTCGTAACATGTGATAGATTGGAATTGGGGAAGTTCTGTGGCTACGGCAGAGGCTGCACTTAATTTTGACAATTATGTTTCATCATTTTATCTCAGCTAATAATTTTTGCTTCTTGCTCATTGATATTGAATTGCTGTACGTTGTATCTTAAGCTGGCTGTGTTTGAGTCTCATAATTGCTCGTTTGTTTTTGTCTCTGTTTCGCATAGTTTTGAACCGAGGGCCTTTCGTCAACATCCCTCTCTCTGCCTCTCTGTATGCCTTGTTTGTTGGTCAAGTTCTTGAAGTCTTCAATTCAATATGGAAATTACTCGTCCTGTACTAGTTAACTGAGACAACCCATGTTCTGGAACTTGGTAGCAGAAGAACTTGCTCTGTTTCTATCTTTGACTTTTCTTCTAAATTACAATTTAAAGGATACCTTGCAGTTTTATCCTATTAGTTTTATTCTCTTCAATTGGTTTTGAAAGTTCTACTTTGGCCCGTAGTTCTTGCCTTCTTCCTGAATTCTGCAGTATTGTTCATGAACACTGAGTTTTACCAGCCTTGTCTTTCTTCAATTCCATGAGAGGGGGGGGGACAGTGGTGGACATATAATTTGTTATCTACTTTTGATTATCTCTTCCATTTCAAAATAAGCAATCTCGTTATCACTGGACGGTATTATCTTCTAAATATGGATTCTAGGCAAGGACCTGGTAGTCGTTGGTTTAATGGTCACTTCTTGTTTTTCCACTTTCGACCAAGTGCTTCTGATGTTTTGCCCCACCAACTTCATCTAGTCAATCTGAATGCCTTCCATATCCCACATGGCCCTTACCTCTGTCATGGCTATGGAGTCATTCCCCCCCCCCCCCCTCTTGATATTCTCATACAATCAAATTTGGTAGACGAATAATAGACTTTAGGATGTAATTTTTTAAATCTAACGTCATAAAAATATTAAATTTATTAGGTTGGTCTAGTGGTCAATAAGGACTATGGGAATAACAAAGTGCCTAGAGAGAATAGGTTGAAGCCATTGTGGCCACCTACCTAGGATTTAATGCAGTAGAATCAAGCGATTGTCCAGTGGAGATTAGTCGAGGTGCATGTAAGTTGGTCTTGACACTCATGGATATCAAAAGTATATATATGAGAATTACCGTGTCAAGAATTTATGTCCAAACCTTGTTGATAAGATATATTTCATATTTATTATCATGTGACACATCTTTAATCTATGGGTGCGCCTTGCAGCCTTCAATGAAACACATCAGGCCTACCTAGTGGTCCTGTCGAATTGCCCAAGAACAGGGCTGATACTTGTATGTGCAAAGCTGTTAGGAACACTGGTAGGTACATGTTAGGGATATTAACAGGGGCATATTTGTGTACTGAAAAAAACCAGGGCATATTTGTAATTACCTAGAAGTTATTTGAGCCGAGTGGCTATATAAATAGAGAGAGTTTGGGAGTTTGGGAGGTAGCCAGAATTTGGATAGTAGTTTTGGTTTTGGGAGAATCCAGGCCTCTTGAAGTGCTTCGTATCTTTTCATTTTCCTTTCTTGTATCACTACTATTTTCAGTTAATTTCCATTTCAATTTGTTGTTCCTATCAAAAGCCAAAAAATTTTGTTCTCTCAACTTTATGGACCAAGCTATAAGTTTATAGCTGCACCAAAACGAGCAATATATGGACTTGATCATTTAGTGCCCCTTTACAGGTGCCTACTTGTGATCAGTTGGTACAAGGTTTTCCTTGTATCAGTTGCCTATCTATGGAATGTCTTAATCTTCCTGTCCTTGTAATACAATAGTAACATCTTGCTGAAAATTCTGGTAGTCAATTTGTTGGCAATATAGTACTACTTCCAGTATTGAACTGCTATATCTCAATACAACTTTGTGCTTTGTTTTGCTTATTATTCTGTTAGGATACTTTCTCTTAGCAACAAAAACACTGAGCACTATTGAGGGAAGAAAAGAGAACTAAAAATATTCACCATAGATTGCTTCCTTACCTGTTAACGCGGTAGTGTTATCTTATCTCTATGATCCATTCACTATAATGTTGTAAGATCTCAAGACTTTTCTGGTTTCTCTCAAGGGCTGGTTTTGAGTGACAAAGTTATTGGCTGCCCGTTTACTATGTGAGAAAAGTTATCCGTTTGTATTGTAGAGAAACAGCAGCAATACCAGATGAAAACTATTGCGCTTCACTGCACAGATCCTTAATCTTGAAACTGATACCACTATATGTTTCACTGTCTTATGCTGTGAAAAGTTTTGCTATGGAAGGATGTTCATTTTGTTATCTTAAGCAAATCTATTTTTGTTGCAAGTCTTGGCCTGCTTCTGTAGTACACGTATTATCTATGTTGGGCCTTGTAACATCTTGAGCTTGTTGTGTCTTTAGCTTTGTGTTTGATCTACTAGTAGAGAGAGTTGATTACTGGTTAAATTCTTCAAACTGGGATATTGTTCTTTGACATTTGTGGATGCTTGTTACAAATTTCAGCCATCGATGTTTTGGTTTTGTTTAATGCAGATGACTGTGTATTCCTGTGGAGTTTCAGTGCTAATGCCTGGAGATCATATTCCTACTTACATTGCCCACCCGGCTCCTGTACCGTGTCCCCCCGAACGCATTCCATGGCCACAACATCAACACAACGCCGTATCATATGCCAGCACCAGTTCCCATTTCACTGAAAACTCGAGTTCCTAA

mRNA sequence

ATGTCGAAACGGGGAAATTTCTCTGAAACCTTTCGCCCCAATATGAGTGAAGAAGCCTATGGTTGGTCCCCAATTGGGGCTCCTCTAGACGTCCAGAGAGAGGACCACTGGAGGCATTTCGATAACTCGGTCGATGCTGTCTCTTTTGGCTTTGTTGCCACTGCCATTCTCGTCTCAATGTTCTTGCTCATGGCTATCTTTGAGAGGTTTTTGCGACCCGCTCCGACGGCTTTCTCTCACGCCGGTCCCCGGAGCCACCTTGACCCCGAGGCTCAGATGGGTCTTGCTGGAAAGCTCGGTCACCCCTCACCCAAAATGACTGTGTATTCCTGTGGAGTTTCAGTGCTAATGCCTGGAGATCATATTCCTACTTACATTGCCCACCCGGCTCCTGTACCGTGTCCCCCCGAACGCATTCCATGGCCACAACATCAACACAACGCCGTATCATATGCCAGCACCAGTTCCCATTTCACTGAAAACTCGAGTTCCTAA

Coding sequence (CDS)

ATGTCGAAACGGGGAAATTTCTCTGAAACCTTTCGCCCCAATATGAGTGAAGAAGCCTATGGTTGGTCCCCAATTGGGGCTCCTCTAGACGTCCAGAGAGAGGACCACTGGAGGCATTTCGATAACTCGGTCGATGCTGTCTCTTTTGGCTTTGTTGCCACTGCCATTCTCGTCTCAATGTTCTTGCTCATGGCTATCTTTGAGAGGTTTTTGCGACCCGCTCCGACGGCTTTCTCTCACGCCGGTCCCCGGAGCCACCTTGACCCCGAGGCTCAGATGGGTCTTGCTGGAAAGCTCGGTCACCCCTCACCCAAAATGACTGTGTATTCCTGTGGAGTTTCAGTGCTAATGCCTGGAGATCATATTCCTACTTACATTGCCCACCCGGCTCCTGTACCGTGTCCCCCCGAACGCATTCCATGGCCACAACATCAACACAACGCCGTATCATATGCCAGCACCAGTTCCCATTTCACTGAAAACTCGAGTTCCTAA

Protein sequence

MSKRGNFSETFRPNMSEEAYGWSPIGAPLDVQREDHWRHFDNSVDAVSFGFVATAILVSMFLLMAIFERFLRPAPTAFSHAGPRSHLDPEAQMGLAGKLGHPSPKMTVYSCGVSVLMPGDHIPTYIAHPAPVPCPPERIPWPQHQHNAVSYASTSSHFTENSSS

Homology

[Close]

BLAST of Lag0024865 vs. NCBI nr
Match: XP_023001755.1 (uncharacterized protein LOC111495798 [Cucurbita maxima])

HSP 1 Score: 314.3 bits (804), Expect = 6.2e-82
Identity = 150/164 (91.46%), Postives = 154/164 (93.90%), Query Frame = 0


Query: 1   MSKRGNFSETFRPNMSEEAYGWSPIGAPLDVQREDHWRHFDNSVDAVSFGFVATAILVSM 60
           MS+RGN SETF  NM EE YGWSP GAPLDVQREDHWRHFDNSVDAVSFGFVATAILVSM
Sbjct: 1   MSERGNSSETFGHNMGEEGYGWSPTGAPLDVQREDHWRHFDNSVDAVSFGFVATAILVSM 60

Query: 61  FLLMAIFERFLRPAPTAFSHAGPRSHLDPEAQMGLAGKLGHPSPKMTVYSCGVSVLMPGD 120
           FLLMAIFERFLRP PTAFSHAG R+HLDPEAQMG AGKLGHPSPKMTVYSCGVSVLMPGD
Sbjct: 61  FLLMAIFERFLRPTPTAFSHAGRRTHLDPEAQMGFAGKLGHPSPKMTVYSCGVSVLMPGD 120

Query: 121 HIPTYIAHPAPVPCPPERIPWPQHQHNAVSYASTSSHFTENSSS 165
           HIPTYIAHPAPVPCPPERIPWPQHQHN +SYA+TSSHFTENSSS
Sbjct: 121 HIPTYIAHPAPVPCPPERIPWPQHQHNDLSYATTSSHFTENSSS 164

[Close]

BLAST of Lag0024865 vs. NCBI nr
Match: KAG6584016.1 (hypothetical protein SDJN03_19948, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019634.1 hypothetical protein SDJN02_18597 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 312.4 bits (799), Expect = 2.3e-81
Identity = 149/164 (90.85%), Postives = 153/164 (93.29%), Query Frame = 0


Query: 1   MSKRGNFSETFRPNMSEEAYGWSPIGAPLDVQREDHWRHFDNSVDAVSFGFVATAILVSM 60
           MS+RGN SETF  NM EE YGWSP GAPLDVQREDHWRHFDNSVDAVSFGFVATAILVSM
Sbjct: 1   MSERGNSSETFGDNMGEEGYGWSPTGAPLDVQREDHWRHFDNSVDAVSFGFVATAILVSM 60

Query: 61  FLLMAIFERFLRPAPTAFSHAGPRSHLDPEAQMGLAGKLGHPSPKMTVYSCGVSVLMPGD 120
           FLLMAIFERFLRP PTAFSHAG R+HLDPEAQMG AGKLGHPSPKMTVYSCGVSVLMPGD
Sbjct: 61  FLLMAIFERFLRPTPTAFSHAGRRTHLDPEAQMGFAGKLGHPSPKMTVYSCGVSVLMPGD 120

Query: 121 HIPTYIAHPAPVPCPPERIPWPQHQHNAVSYASTSSHFTENSSS 165
           HIPTYIAHPAPVPCPPERIPWPQHQHN +SYA+TSSH TENSSS
Sbjct: 121 HIPTYIAHPAPVPCPPERIPWPQHQHNDLSYATTSSHITENSSS 164

[Close]

BLAST of Lag0024865 vs. NCBI nr
Match: XP_022927571.1 (uncharacterized protein LOC111434363 [Cucurbita moschata])

HSP 1 Score: 311.6 bits (797), Expect = 4.0e-81
Identity = 149/164 (90.85%), Postives = 153/164 (93.29%), Query Frame = 0


Query: 1   MSKRGNFSETFRPNMSEEAYGWSPIGAPLDVQREDHWRHFDNSVDAVSFGFVATAILVSM 60
           MS+RGN SETF  NM EE YGWSP GAPLDVQREDHWRHFDNSVDAVSFGFVATAILVSM
Sbjct: 1   MSERGNSSETFGDNMGEEGYGWSPTGAPLDVQREDHWRHFDNSVDAVSFGFVATAILVSM 60

Query: 61  FLLMAIFERFLRPAPTAFSHAGPRSHLDPEAQMGLAGKLGHPSPKMTVYSCGVSVLMPGD 120
           FLLMAIFERFLRP PTAFSHAG R+HLDPEAQMG AGKLGHPSPKMTVYSCGVSVLMPGD
Sbjct: 61  FLLMAIFERFLRPTPTAFSHAGRRTHLDPEAQMGFAGKLGHPSPKMTVYSCGVSVLMPGD 120

Query: 121 HIPTYIAHPAPVPCPPERIPWPQHQHNAVSYASTSSHFTENSSS 165
           HIPTYIAHPAPV CPPERIPWPQHQHN +SYA+TSSHFTENSSS
Sbjct: 121 HIPTYIAHPAPVSCPPERIPWPQHQHNDLSYATTSSHFTENSSS 164

[Close]

BLAST of Lag0024865 vs. NCBI nr
Match: XP_022139852.1 (uncharacterized protein LOC111010664 [Momordica charantia])

HSP 1 Score: 308.9 bits (790), Expect = 2.6e-80
Identity = 147/164 (89.63%), Postives = 152/164 (92.68%), Query Frame = 0


Query: 1   MSKRGNFSETFRPNMSEEAYGWSPIGAPLDVQREDHWRHFDNSVDAVSFGFVATAILVSM 60
           MSKRGNFSETFR +M EE YGWSPIGAPLD+ REDHWRHFDNSVDAVSFGFVATAILVSM
Sbjct: 1   MSKRGNFSETFRHHMGEEDYGWSPIGAPLDLHREDHWRHFDNSVDAVSFGFVATAILVSM 60

Query: 61  FLLMAIFERFLRPAPTAFSHAGPRSHLDPEAQMGLAGKLGHPSPKMTVYSCGVSVLMPGD 120
           FL+MAIFERFLRPAPTAFSH   RSHLDPEAQ+  AGKLGHPSPKMTVYSCGVSVLMPGD
Sbjct: 61  FLVMAIFERFLRPAPTAFSHTAGRSHLDPEAQVRFAGKLGHPSPKMTVYSCGVSVLMPGD 120

Query: 121 HIPTYIAHPAPVPCPPERIPWPQHQHNAVSYASTSSHFTENSSS 165
           HIPTYIAHPAPVPCPPERIPWPQHQHN  SYA+TSSH TENSSS
Sbjct: 121 HIPTYIAHPAPVPCPPERIPWPQHQHNTTSYATTSSHLTENSSS 164

[Close]

BLAST of Lag0024865 vs. NCBI nr
Match: XP_023519551.1 (uncharacterized protein LOC111782932 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 308.5 bits (789), Expect = 3.4e-80
Identity = 147/164 (89.63%), Postives = 152/164 (92.68%), Query Frame = 0


Query: 1   MSKRGNFSETFRPNMSEEAYGWSPIGAPLDVQREDHWRHFDNSVDAVSFGFVATAILVSM 60
           MS+RGN SETF  NM EE YGWSP GAPLDVQREDHWRHFDNSVDAVSFGFVATAILVSM
Sbjct: 1   MSERGNSSETFGHNMGEEGYGWSPTGAPLDVQREDHWRHFDNSVDAVSFGFVATAILVSM 60

Query: 61  FLLMAIFERFLRPAPTAFSHAGPRSHLDPEAQMGLAGKLGHPSPKMTVYSCGVSVLMPGD 120
           FLLMAIFERFLRP PTAFSH G R+HLDPEAQMG AGKLGH SPKMTVYSCGVSVLMPGD
Sbjct: 61  FLLMAIFERFLRPTPTAFSHTGRRTHLDPEAQMGFAGKLGHSSPKMTVYSCGVSVLMPGD 120

Query: 121 HIPTYIAHPAPVPCPPERIPWPQHQHNAVSYASTSSHFTENSSS 165
           HIPTYIAHPAPVPCPPERIPWPQHQHN +S+A+TSSHFTENSSS
Sbjct: 121 HIPTYIAHPAPVPCPPERIPWPQHQHNDISHATTSSHFTENSSS 164

The following BLAST results are available for this feature:

BLAST of Lag0024865 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023001755.1	6.2e-82	91.46	uncharacterized protein LOC111495798 [Cucurbita maxima]	[more]
KAG6584016.1	2.3e-81	90.85	hypothetical protein SDJN03_19948, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022927571.1	4.0e-81	90.85	uncharacterized protein LOC111434363 [Cucurbita moschata]	[more]
XP_022139852.1	2.6e-80	89.63	uncharacterized protein LOC111010664 [Momordica charantia]	[more]
XP_023519551.1	3.4e-80	89.63	uncharacterized protein LOC111782932 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0024865 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33728:SF13	CTTNBP 2 AMINO-TERMINAL-LIKE PROTEIN	coord: 15..156
None	No IPR available	PANTHER	PTHR33728	CTTNBP 2 AMINO-TERMINAL-LIKE PROTEIN	coord: 15..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0024865.1	Lag0024865.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane