Lag0024652 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0024652
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr10: 4662331 .. 4663815 (-)
RNA-Seq ExpressionLag0024652
SyntenyLag0024652
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCCTATTTGGTGATGTTGATCCTCCCTGTAACTGTGGGTCTAAAGCACGTGCATCTGTAGTTAAGCATGTGCTTTGTTCACTGATTAAGGCAGAAATGAGACTGTCTTTGTTGGCTGGTACCTTAACAGGTAAGGGTCCTACTCAACTCTTGGCCCATTACAGCCATTGCTCTATTTGACTGAGCTAGCTAAGCTTACTATTTTATTCTCTCAATCTCTTTCCTTTTCTTCTGCTTTACTTAATGTTGTCCACTTTGAAGCAGATATCTTTCTTTATTTTGGAAGCAGTAGTAAACAATTTACTGTTTCCTATATTCTTAGCTATAGTGGATTTGGCCTAATTTAATAAGATTAGAAGAGCTGAACTTTTCCTCTTCCCTGTCCTGCCCTTTTGTATCCTAGCTGGTTTCATGATGAAATTATAGTGACCAGTCCAGTTTCTAATCATGATAGCTGTCCATAGCAGGGATATACTTCGTCTGTGAGAGAGGGGGGCCATTGTATCTTGTATAATCAACCAGTCTTAAGGAGACGTTTTACTAACTTTTAGGATTCCAACATTCTTAATACCGAAGCAATGACTAAGCAGATGGTGGATACTTCTTATCTGCTGTTTTATCAGTACAATATCCCAGAGAAGAGATGAACAGAAATGGCTAAAGAGAGTTAAAGTTGGGTTTATGTTCCCTAACCTTTGGGTTAACTCATCCATTTCTGCTGCTTGTTGACCTCACGGCGCTTGAATCAACTCAGCTGAAATTGCATTATAGATGAAAATTTTACACTTGGGGCGATATACAATGACATGTTTGGATATCTGTCTTGAAAATGTAGACGAAAATATCAATAAGGCAATAGATTATAGACTTCAAAGAGAAGGAAAAGAAAACTTCAATCTGTCCAAAACTACAGATTGTGAGATTGTGGATGAAATTTCCCTTCACGAACATAAATACATGGCTAAACTGAAAGAAACGGATTCGGTTTTACGAACAACCGTAGATAGTAACTCTCCTTGTTGTCTTGGGTTGACAGAGAATAAAGATAGCCATATCTAAGACCAAAGCCTTGCAATCCAACCAGCACACTGCTATCCTCTGATTTCCAGCAGCTCTGCAGCATTCTTCTGTATGCATTGAGTTCTGGGTCTTCATGAACTTGTCAACTTCTAATCATGAGCAAACCTGTTTACTGGAAAGAAAGGAAGAGAGAACAATTTGAGGTGCAAAGGGTTCAGTTTGGCTTAGAAAGTATCAAAACTTAAACACAACATGGAAGGGGTACAAAACTTCTATCCAAAATCTTTATGCAACAAATGAAGAATTGACACGTTAGTCACAAATGTGGCTCCCGTTGGGTTCTGGTTGTTCTGTTTGCTTGCGGCTAAAAGTGAGCTGCCTGCAGTTCTTCTTCTTCCTATGTCATCTGATGGCTTCTCTGCTTTGCCACCTGAAGACCGGGTTCCGAGTTCCGAGTTCTAA

mRNA sequence

ATGTGCCTATTTGGTGATGTTGATCCTCCCTGTAACTGTGGGTCTAAAGCACGTGCATCTGTAGTTAAGCATGTGCTTTGTTCACTGATTAAGGCAGAAATGAGACTGTCTTTGTTGGCTGGTACCTTAACAGTCACAAATGTGGCTCCCGTTGGGTTCTGGTTGTTCTGTTTGCTTGCGGCTAAAAGTGAGCTGCCTGCAGTTCTTCTTCTTCCTATGTCATCTGATGGCTTCTCTGCTTTGCCACCTGAAGACCGGGTTCCGAGTTCCGAGTTCTAA

Coding sequence (CDS)

ATGTGCCTATTTGGTGATGTTGATCCTCCCTGTAACTGTGGGTCTAAAGCACGTGCATCTGTAGTTAAGCATGTGCTTTGTTCACTGATTAAGGCAGAAATGAGACTGTCTTTGTTGGCTGGTACCTTAACAGTCACAAATGTGGCTCCCGTTGGGTTCTGGTTGTTCTGTTTGCTTGCGGCTAAAAGTGAGCTGCCTGCAGTTCTTCTTCTTCCTATGTCATCTGATGGCTTCTCTGCTTTGCCACCTGAAGACCGGGTTCCGAGTTCCGAGTTCTAA

Protein sequence

MCLFGDVDPPCNCGSKARASVVKHVLCSLIKAEMRLSLLAGTLTVTNVAPVGFWLFCLLAAKSELPAVLLLPMSSDGFSALPPEDRVPSSEF
Homology
[Close]
BLAST of Lag0024652 vs. NCBI nr
Match: KGN66828.1 (hypothetical protein Csa_006838 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 9.6e-08
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 7  VDPPCNCGSKARASVVKHVLCSLIKAEMRLSLLAGTLTV 46
          ++PPCNCGSK RASVVKHVLCSLIKA +RL LLAG LTV
Sbjct: 2  LNPPCNCGSKPRASVVKHVLCSLIKARIRLYLLAGALTV 40

The following BLAST results are available for this feature:
BLAST of Lag0024652 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66828.19.6e-0882.05hypothetical protein Csa_006838 [Cucumis sativus][more]
BLAST of Lag0024652 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0024652.1Lag0024652.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane